nanopore
Here are 253 public repositories matching this topic...
Structural variation caller using third generation sequencing
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Apr 14, 2025 - Python
A PyTorch Basecaller for Oxford Nanopore Reads
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Apr 11, 2025 - Python
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
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Oct 18, 2024 - Python
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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Apr 14, 2025 - Python
A curated list of awesome nanopore analysis tools.
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Aug 6, 2024
PEPPER-Margin-DeepVariant
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Jan 12, 2024 - Python
Assembly and binning of metagenomes
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Apr 30, 2025 - Nextflow
Reference-guided transcript discovery and quantification for long read RNA-Seq data
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May 5, 2025 - R
A bioinformatics tool for working with modified bases
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Apr 15, 2025 - Rust
Methylation/modified base calling separated from basecalling.
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Sep 17, 2024 - Python
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
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Apr 18, 2022
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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May 4, 2025 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
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Nov 7, 2024 - Python
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