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nf-test: add tests for nf-test profile

#828

· jfy133 opened

on Jun 12, 2025

Use hostile for host read removal

#822

· dialvarezs opened

on Jun 2, 2025

Refactor pipeline to only refer to params in entry workflow

#821

· prototaxites opened

on Jun 2, 2025

Move all local modules and subworkflows to directory structure

good first issue

#817

· jfy133 opened

on May 28, 2025

Replace POOL_* local modules with nf-core's CAT_ FASTQ modules

good first issue

#810

· jfy133 opened

on May 24, 2025

Standardise pre-processing parameter flags between long and short reads

#806

· prototaxites opened

on May 14, 2025

Add fairy for fast co-coverage estimation

#796

· prototaxites opened

on May 8, 2025

QUAST_BINS can be very slow / Reconfigure BIN_SUMMARY table

#789

· prototaxites opened

on Apr 9, 2025

Process FAIDX removable in subworkflow ANCIENT_DNA_ASSEMBLY_VALIDATION (?)

#772

· simoxb opened

on Mar 12, 2025

Fix version reporting for all subworkflows

good first issue

#761

· jfy133 opened

on Feb 5, 2025

Remove unusued local modules

#757

· jfy133 opened

on Jan 30, 2025

Replace QUAST custom modules with official nf-core ones

#748

· amizeranschi opened

on Jan 20, 2025

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