Aggregate results from bioinformatics analyses across many samples into a single report.
Structural variation caller using third generation sequencing
A flexible pipeline for complete analysis of bacterial genomes
Toolset for SV simulation, comparison and filtering
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
🚀 seqfu - Sequece Fastx Utilities
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
🦠📇 Microbial genomes-to-report pipeline
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Recommendations to contenarized your bioinformatics software
Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)
BioContainers Documentation.
A quick overview of how to use Bioconda, and create recipes
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