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19 pages, 2273 KiB  
Article
Signal Preprocessing in Instrument-Based Electronic Noses Leads to Parsimonious Predictive Models: Application to Olive Oil Quality Control
by Luis Fernandez, Sergio Oller-Moreno, Jordi Fonollosa, Rocío Garrido-Delgado, Lourdes Arce, Andrés Martín-Gómez, Santiago Marco and Antonio Pardo
Sensors 2025, 25(3), 737; https://doi.org/10.3390/s25030737 - 25 Jan 2025
Viewed by 537
Abstract
Gas sensor-based electronic noses (e-noses) have gained considerable attention over the past thirty years, leading to the publication of numerous research studies focused on both the development of these instruments and their various applications. Nonetheless, the limited specificity of gas sensors, along with [...] Read more.
Gas sensor-based electronic noses (e-noses) have gained considerable attention over the past thirty years, leading to the publication of numerous research studies focused on both the development of these instruments and their various applications. Nonetheless, the limited specificity of gas sensors, along with the common requirement for chemical identification, has led to the adaptation and incorporation of analytical chemistry instruments into the e-nose framework. Although instrument-based e-noses exhibit greater specificity to gasses than traditional ones, they still produce data that require correction in order to build reliable predictive models. In this work, we introduce the use of a multivariate signal processing workflow for datasets from a multi-capillary column ion mobility spectrometer-based e-nose. Adhering to the electronic nose philosophy, these workflows prioritized untargeted approaches, avoiding dependence on traditional peak integration techniques. A comprehensive validation process demonstrates that the application of this preprocessing strategy not only mitigates overfitting but also produces parsimonious models, where classification accuracy is maintained with simpler, more interpretable structures. This reduction in model complexity offers significant advantages, providing more efficient and robust models without compromising predictive performance. This strategy was successfully tested on an olive oil dataset, showcasing its capability to improve model parsimony and generalization performance. Full article
(This article belongs to the Special Issue Gas Recognition in E-nose System)
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Figure 1
<p>MCC-IMS data acquired from an olive oil sample. An MCC chromatogram and an IMS spectrum are also shown. IMS spectra show prominent peak (RIP) close to 6 ms. The region of the image in which most of the peaks appear is also shown in a three-dimensional plot, showing the complexity of the captured data. Note the non-uniform color scale to highlight the peaks in data.</p>
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<p>Steps involved in the development of calibration models for MCC-IMS data 2.2.1 preprocessing.</p>
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<p>Double cross-validation scheme utilized to evaluate the classification performance of models.</p>
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<p>(<b>a</b>) Segment of a spectrum before and after applying a second derivative Savitzky–Golay filter with window sizes of n = 7 and n = 9; (<b>b</b>) a different segment of the same spectrum filtered with window sizes of n = 35 and n = 39. Note the presence of an optimal window size that minimizes noise while preserving the spectral shape; (<b>c</b>) filtered spectrum and baseline estimation using AsLS after various iterations, showing rapid convergence toward accurate baseline estimation; (<b>d</b>) filtered spectrum and the resulting spectrum after baseline correction; (<b>e</b>) three spectra (acquired at tret = 104 s), each corresponding to one of the olive oil classes (LOO, VOO, and EVOO) after noise removal and baseline correction, demonstrating misaligned peaks; (<b>f</b>) the same spectra after peak alignment.</p>
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<p>The selection of latent variables was based on optimizing classification accuracy during internal validation. The figure indicates that data preprocessing reduces model complexity while maintaining performance. Baseline removal followed by peak alignment are the preprocessing steps that contribute most to this improvement.</p>
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<p>Scores for the first two latent variables of the training set. The same projection is used for the test samples. EVOO samples tend to exhibit higher scores on LV1.</p>
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<p>Average VIP scores of the final PLS-DA models. Relevant features for samples’ class separation (VIP score higher than 1) are colored in red hues.</p>
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18 pages, 2875 KiB  
Article
Disease-Associated Signatures Persist in Extracellular Vesicles from Reprogrammed Cells of Osteoarthritis Patients
by María Piñeiro-Ramil, Iván Gómez-Seoane, Ana Isabel Rodríguez-Cendal, Clara Sanjurjo-Rodríguez, Selva Riva-Mendoza, Isaac Fuentes-Boquete, Javier De Toro-Santos, José Señarís-Rodríguez and Silvia Díaz-Prado
Int. J. Mol. Sci. 2025, 26(3), 870; https://doi.org/10.3390/ijms26030870 - 21 Jan 2025
Viewed by 407
Abstract
Osteoarthritis (OA) is a prevalent joint disorder that lacks effective therapies to halt cartilage degeneration. Mesenchymal stromal cell (MSC)-derived small extracellular vesicles (sEVs) are being investigated as promising chondroprotective agents. Compared to primary MSCs, induced pluripotent stem cell (iPSC)-derived MSCs (MLCs) offer superior [...] Read more.
Osteoarthritis (OA) is a prevalent joint disorder that lacks effective therapies to halt cartilage degeneration. Mesenchymal stromal cell (MSC)-derived small extracellular vesicles (sEVs) are being investigated as promising chondroprotective agents. Compared to primary MSCs, induced pluripotent stem cell (iPSC)-derived MSCs (MLCs) offer superior scalability and enhanced paracrine activity. The aim of this study was to explore the feasibility of using autologous MLC-derived sEVs as a potential therapeutic strategy for OA through the analysis of their protein cargo. iPSCs from an OA patient and a healthy donor were differentiated into MLCs. sEVs were isolated from these MLCs and characterized, with a particular focus on their protein cargo. Both iPSC lines were successfully differentiated into MLCs, which secreted sEVs with comparable size distributions and yields. The analysis of differentially expressed proteins revealed a high abundance of proteins associated with OA pathology and cartilage degradation in sEVs from OA MLCs compared to those from healthy MLCs. The persistence of OA-associated protein signatures in autologous MLC-derived sEVs may limit their therapeutic efficacy. These findings underscore the importance of carefully evaluating disease-specific protein profiles in sEVs for regenerative applications. Full article
(This article belongs to the Special Issue Regenerative Medicine: Biomaterials and Stem Cell Research)
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<p>Micrographs showing the phases of differentiation of healthy (N) and pathological (OA) iPSC lines into mesenchymal-like cells (MLCs). Magnification: 4× (EBs), 10× (MLCs).</p>
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<p>(<b>A</b>) Alizarin Red and Oil Red O staining of MLCs after 21 days of osteogenic and adipogenic induction, respectively. Scale bar: 200 µm. (<b>B</b>) Relative gene expression of Runt-related transcription factor 2 (RUNX2) and alkaline phosphatase (ALPL) in MLC-N and MLC-OA after 21 days of culture in basal medium (EB) and osteogenic medium (OB). **, <span class="html-italic">p</span> ≤ 0.01.</p>
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<p>Safranin O and Masson’s Trichrome staining of MLC micromasses after 21 days of culture in chondrogenic medium. Scale bar: 100 µm.</p>
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<p>(<b>A</b>) Western blotting of the extracellular vesicle markers CD9 and CD63 in sEVs derived from MLC-N and MLC-OA, with platelet lysate as a positive control. (<b>B</b>) Morphology of MLC-OA-derived sEVs observed by transmission electron microscopy (TEM). Scale bar: 100 nm. (<b>C</b>) Size distribution of MLC-derived sEVs, as measured by nanoparticle tracking analysis (NTA).</p>
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<p>(<b>A</b>) Volcano plot showing the proteins downregulated (teal dots) and upregulated (purple dots) in MLC-OA sEVs compared to MLC-N sEVs, with a threshold of ±0.6 log2 fold change and a <span class="html-italic">q</span>-value cut-off of 0.05. The ten upregulated and downregulated proteins are indicated with their gene symbols: PDLIM3 (PDZ and LIM domain protein 3), COL4A5 (collagen alpha-5(IV) chain), CDH13 (cadherin-13), SCG2 (secretogranin-2), TGFB2 (transforming growth factor beta 2), PTX3 (pentraxin-related protein), DCN (decorin), PDGFD (platelet-derived growth factor D), C1R (complement C1r subcomponent), CFH (complement factor H), and CLU (clusterin). (<b>B</b>) STRING network formed by the proteins upregulated in MLC-OA sEVs, with the main cluster (elastic fiber formation and matrix metalloproteinases) shown in red. (<b>C</b>) STRING network formed by the proteins downregulated in MLC-OA sEVs, forming a closely interconnected cluster related to extracellular matrix (ECM) proteoglycans. Lines connecting the nodes (proteins) represent predicted protein–protein interactions. Different colors indicate the type of evidence supporting the interaction: green for gene neighborhood, blue for gene co-occurrence, purple for experimental evidence, black for co-expression, light blue for database evidence, and pink for text mining. Dashed lines represent interactions predicted by homology.</p>
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20 pages, 4538 KiB  
Article
In Vivo and In Vitro Evaluation of the Feasibility and Safety Profiles of Intraarticular Transplantation of Mitochondria for Future Use as a Therapy for Osteoarthritis
by Carlos Vaamonde-Garcia, Tamara Hermida-Gómez, Sara Paniagua-Barro, Elena F. Burguera, Francisco J. Blanco and Mercedes Fernández-Moreno
Cells 2025, 14(3), 151; https://doi.org/10.3390/cells14030151 - 21 Jan 2025
Viewed by 627
Abstract
Osteoarthritis (OA) is the most common rheumatologic disease and a major cause of pain and disability in older adults. No efficient treatment is currently available. Mitochondrial dysfunction in chondrocytes drives molecular dysregulation in OA pathogenesis. Recently, mitochondrial transfer to chondrocytes had been described, [...] Read more.
Osteoarthritis (OA) is the most common rheumatologic disease and a major cause of pain and disability in older adults. No efficient treatment is currently available. Mitochondrial dysfunction in chondrocytes drives molecular dysregulation in OA pathogenesis. Recently, mitochondrial transfer to chondrocytes had been described, enabling transplant of mitochondria as a new avenue to modify the OA process, although evidence on its feasibility and safety remains limited.The primary objective of this study was to demonstrate the feasibility and safety of intra-articular mitochondrial transplantation. Mitochondria were isolated from liver using the procedure described by Preble and coworkers combined with magnetic beads coupled to anti-TOM22 antibodies. The organelles obtained were analyzed to determine their purity and viability. The safety and viability of the administration of the isolated mitochondria into articular tissues as well as the integration and distribution of the transplanted mitochondria within joint tissues were analyzed using both in vitro and in vivo models. We established an efficient, reproducible, effective, and rapid protocol for isolating mitochondria from liver. We obtained mitochondria with high viability, yield, and purity. The isolated mitochondria were injected into joint tissue using both in vitro and in vivo models. Functional mitochondria were detected in the extracellular matrix of the cartilage, menisci and synovium. Our results establish a safe and viable protocol for mitochondrial isolation and intra-articular injection. The methodology and findings presented here pave the way for future studies in osteoarthritis models to validate mitochondrial transplantation as a potentially effective treatment for OA. Full article
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<p>Protocol for isolating mitochondria from liver. A 0.3 g piece of liver was mechanically and enzymatically digested using a gentleMACS, followed by labeling with anti-Tom22 antibody. The isolated mitochondria were preserved in storage buffer.</p>
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<p>Liver preserved at 4 °C in PBS+EDTA overnight. Mouse livers were obtained and used fresh or preserved in PBS+EDTA (10 mM) overnight (O/N) before mitochondrial isolation using a previously described protocol. Isolated mitochondria were stained with MitoTracker Red<sup>®</sup>, and the organelles were analyzed using bright-field (BF) and fluorescence microscopy. Scale bar: 100 μm.</p>
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<p>Purity and viability of isolated mitochondria. (<b>A</b>) Membrane potential (ψm) of isolated mitochondria labeled with MitoTracker Red<sup>®</sup>. Representative fluorescence microscopy image is shown (<b>upper panel</b>). FACS analysis was conducted to compare mitochondria without and with MitoTracker Red<sup>®</sup> (MT) staining, and the results are presented as graphs showing the median fluorescence (<b>lower panels</b>) (<span class="html-italic">n</span> = 4). (<b>B</b>) ATP production (nmol/µg mitochondrial protein) was determined using an ATP assay of isolated mitochondria under basal conditions or incubated with 0.8 µM rotenone (Rot) or antimycin A (Ant) for 2 h (<span class="html-italic">n</span> = 4). (<b>C</b>) Transmission electron microscopy (TEM) image of isolated mitochondria. Representative image of mitochondria from mouse liver. Mitochondrial morphology was investigated using TEM, and images were acquired at magnifications of 9000× (<b>left panel</b>) and 25,000× (<b>right panel</b>). Black bars indicate 2.5 µm (<b>left panel</b>) and 1 µm (<b>right panel</b>). Black dots at the outer membrane represent anti-TOM22 magnetic beads (red arrows). (<b>D</b>) Western blotting of protein extracts probed with antibodies specific for organelle/cell compartment–specific marker proteins (ATPsintase α), the endoplasmic reticulum (GRP78-BIP), cytosol (α-Tubulin) and nucleus (Histone H3). Lv: liver homogenate, Elt: first elution through the magnetic column, Mit: isolated mitochondria. * <span class="html-italic">p</span> ≤ 0.05. (<b>E</b>) Iron nanoparticle and MitoTracker Red<sup>®</sup> labeling of isolated mitochondria. Mitochondria were isolated from mouse liver and then labeled with iron nanoparticles (<b>upper panel</b>) or MitoTracker Red<sup>®</sup> (<b>lower panel</b>).</p>
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<p>Mitochondria have the capacity to break through joint tissue. (<b>A</b>) Piglet model. Cartilage (<b>upper panels</b>) and synovial membrane (<b>lower panels</b>) were obtained and incubated in the presence of 14 µg of mitochondria, obtained from piglet liver, labeled with iron nanoparticles or MitoTracker Red<sup>®</sup>. (<b>B</b>) Cartilage tissue was incubated in the presence of isolated mitochondria labeled with MitoTracker Red<sup>®</sup> for 24 and 48 h and then analyzed using confocal microscopy. (<b>C</b>) Synovial membrane was incubated according to the same procedure described above. Negative control = tissue incubated with storage buffer (without mitochondria) with MitoTracker Red<sup>®</sup>. Representative images 20×.</p>
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<p>Confirmation that mitochondria have the capacity to break through joint tissue. (<b>A</b>) Piglet model. Joint tissues were obtained and incubated in the presence of 28 µg of mitochondria (obtained from piglet liver) labeled with MitoTracker Red<sup>®</sup> and incubated for 48, 76, 96, 120 h and 1 and 2 weeks. (<b>B</b>) Cartilage tissue was incubated in the presence of only buffer and only MitoTracker Red<sup>®</sup> using as technique controls, then isolated mitochondria labeled with MitoTracker Red<sup>®</sup> were incubated during the time described and the tissue was analyzed using confocal microscopy.</p>
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<p>Confirmation that mitochondria have the capacity to break through the synovial membrane. Synovial membrane was incubated in the presence of only buffer and only MitoTracker Red<sup>®</sup> using as technique controls, then isolated mitochondria labeled with MitoTracker Red<sup>®</sup> were incubated during the time described and the tissue was analyzed using confocal microscopy. Representative images 40×.</p>
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<p>Mitochondria were detected in cartilage and synovial membrane using TEM. (<b>A</b>) Representative TEM images of cartilage explants without added mitochondria showed no mitochondria in the ECM. The panel shows the chondrocyte morphology in the different cartilage layers. Images were acquired at 5000×, and the white bar indicates 10 µm. (<b>B</b>) Representative TEM images of cartilage explants with added mitochondria labeled with iron nanoparticles for 48 h. Left panel shows the presence of mitochondria in the superficial layer embedded in the ECM. Images were acquired at 15,000× and 40,000×, respectively, and the white bars indicate 2 and 1 µm, respectively. (<b>C</b>) Synovial membrane without added mitochondria showed synoviocytes and ECM morphology investigated by TEM; image was acquired at 15,000×, and white bars indicate 2 µm. (<b>D</b>) Representative image of synovial membrane incubated in the presence of mitochondria labeled with iron nanoparticles showing mitochondria in the ECM and inside some synoviocytes. <b>Left panel</b> shows the presence of mitochondria embedded in the ECM and magnification of a small area; these images were acquired at 15,000× and 50,000×, respectively, and the white bars indicate 2 µm and 0.5 µm, respectively. <b>Right panel</b> shows the presence of mitochondria labeled with iron nanoparticles inside the synoviocytes and the magnification of a small area; these images were acquired at 25,000× and 60,000×, respectively, and the white bars indicate 2 µm and 200 nm, respectively. ECM = extracellular matrix, ch = chondrocyte, s = synoviocyte.</p>
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<p>In vivo model. (<b>A</b>) Mitochondria obtained from mouse liver were labeled with MitoTracker Red<sup>®</sup> and injected into the mouse’s left knee; after 48 h, the animal was sacrificed and the left joint was obtained and processed. (<b>B</b>) Representative image of complete left knee stained with hematoxylin and eosin (H&amp;E). (<b>C</b>) Complementary images from areas 1 (black box in (<b>B</b>)) and 2 (dash box in panel (<b>B</b>)) analyzed under fluorescence microscopy. Red fluorescence from isolated mitochondria (red) was detected in the superficial layer of the cartilage and in the synovial membrane. Light: image obtained without fluorescence. Red: image obtained whit red fluoresce.</p>
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<p>In vivo model analysis of red fluorescence showed the presence of red mitochondria in the superficial layer of the cartilage and in the synovial membrane. Neg = vehicle (only isolation buffer) inject into the joint, Control = supernatant obtained from isolation buffer (without mitochondria) incubated with MitoTracker Red<sup>®</sup>, Mito = isolated mitochondria in isolation buffer labeled with MitoTracker Red<sup>®</sup>, c = cartilage, s = synovial membrane. Scale bar, 400 µm.</p>
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<p>In vivo model. (<b>A</b>) Schematic illustration of the long-term in vivo model. Mitochondria obtained from C57BL/6JOlaHsd (MitoC57) and NZB/OlaHsd (MitoNZB) mice were injected in the left knee of healthy C57BL/6JOlaHsd mice (without OA damage). Control mice received no injection (Control). After 7 weeks, the mice were sacrificed. M = measurements each week. (<b>B</b>) Weight during the 7 weeks. (<b>C</b>) Joint width. (<b>D</b>,<b>E</b>) Representative staining of cartilage with Safranin O. OARSI score to evaluate cartilage damage. (<b>F</b>,<b>G</b>) Representative staining of synovial membrane with H&amp;E. Krenn score to evaluate synovial membrane inflammation/damage. Full boxes correspond to the left knee, and the empty boxes represent the right joint. <span class="html-italic">n</span> = 3 animals per group.</p>
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13 pages, 1620 KiB  
Article
Deep Learning-Based Glioma Segmentation of 2D Intraoperative Ultrasound Images: A Multicenter Study Using the Brain Tumor Intraoperative Ultrasound Database (BraTioUS)
by Santiago Cepeda, Olga Esteban-Sinovas, Vikas Singh, Prakash Shetty, Aliasgar Moiyadi, Luke Dixon, Alistair Weld, Giulio Anichini, Stamatia Giannarou, Sophie Camp, Ilyess Zemmoura, Giuseppe Roberto Giammalva, Massimiliano Del Bene, Arianna Barbotti, Francesco DiMeco, Timothy Richard West, Brian Vala Nahed, Roberto Romero, Ignacio Arrese, Roberto Hornero and Rosario Sarabiaadd Show full author list remove Hide full author list
Cancers 2025, 17(2), 315; https://doi.org/10.3390/cancers17020315 - 19 Jan 2025
Viewed by 685
Abstract
Background: Intraoperative ultrasound (ioUS) provides real-time imaging during neurosurgical procedures, with advantages such as portability and cost-effectiveness. Accurate tumor segmentation has the potential to substantially enhance the interpretability of ioUS images; however, its implementation is limited by persistent challenges, including noise, artifacts, and [...] Read more.
Background: Intraoperative ultrasound (ioUS) provides real-time imaging during neurosurgical procedures, with advantages such as portability and cost-effectiveness. Accurate tumor segmentation has the potential to substantially enhance the interpretability of ioUS images; however, its implementation is limited by persistent challenges, including noise, artifacts, and anatomical variability. This study aims to develop a convolutional neural network (CNN) model for glioma segmentation in ioUS images via a multicenter dataset. Methods: We retrospectively collected data from the BraTioUS and ReMIND datasets, including histologically confirmed gliomas with high-quality B-mode images. For each patient, the tumor was manually segmented on the 2D slice with its largest diameter. A CNN was trained using the nnU-Net framework. The dataset was stratified by center and divided into training (70%) and testing (30%) subsets, with external validation performed on two independent cohorts: the RESECT-SEG database and the Imperial College NHS Trust London cohort. Performance was evaluated using metrics such as the Dice similarity coefficient (DSC), average symmetric surface distance (ASSD), and 95th percentile Hausdorff distance (HD95). Results: The training cohort consisted of 197 subjects, 56 of whom were in the hold-out testing set and 53 in the external validation cohort. In the hold-out testing set, the model achieved a median DSC of 0.90, ASSD of 8.51, and HD95 of 29.08. On external validation, the model achieved a DSC of 0.65, ASSD of 14.14, and HD95 of 44.02 on the RESECT-SEG database and a DSC of 0.93, ASSD of 8.58, and HD95 of 28.81 on the Imperial-NHS cohort. Conclusions: This study supports the feasibility of CNN-based glioma segmentation in ioUS across multiple centers. Future work should enhance segmentation detail and explore real-time clinical implementation, potentially expanding ioUS’s role in neurosurgical resection. Full article
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<p>Schematic representation of the workflow followed in this study.</p>
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<p>Representative examples of patients from the different datasets and centers included in the study. Tumor segmentations, considered the ground truth, are highlighted with red contours.</p>
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<p>Performance metrics of the glioma segmentation model across different centers. Each subplot represents a key evaluation metric: (<b>A</b>) Dice similarity coefficient, (<b>B</b>) Jaccard index, (<b>C</b>) average symmetric surface distance, (<b>D</b>) 95th percentile Hausdorff distance, (<b>E</b>) precision, and (<b>F</b>) recall. Boxplots illustrate the distribution of metric scores for each center, with the blue horizontal line indicating the median value for each center. Outliers are represented as individual points outside the whiskers.</p>
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<p>Examples of model predictions and Dice similarity score (DSC) values for the hold-out test cohorts (<b>A</b>,<b>B</b>,<b>E</b>,<b>F</b>), as well as the external validation cohorts (<b>C</b>,<b>G</b>) (RESECT-SEG) and (<b>D</b>,<b>H</b>) (Imperial-NHS). The top panels show cases with good performance, whereas the bottom panels illustrate cases with poor performance. The ground truth tumor segmentations are delineated in red contours, whereas predicted segmentations are shown in green.</p>
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22 pages, 4023 KiB  
Article
Osteoblastic Differentiation and Mitigation of the Inflammatory Response in Titanium Alloys Decorated with Oligopeptides
by Aroa Álvarez-López, Raquel Tabraue-Rubio, Rafael Daza, Luis Colchero, Gustavo V. Guinea, Martine Cohen-Solal, José Pérez-Rigueiro and Daniel González-Nieto
Biomimetics 2025, 10(1), 58; https://doi.org/10.3390/biomimetics10010058 - 16 Jan 2025
Viewed by 532
Abstract
Under benign conditions, bone tissue can regenerate itself without external intervention. However, this regenerative capacity can be compromised by various factors, most importantly related with the extent of the injury. Critical-sized defects, exceeding the body’s natural healing ability, demand the use of temporary [...] Read more.
Under benign conditions, bone tissue can regenerate itself without external intervention. However, this regenerative capacity can be compromised by various factors, most importantly related with the extent of the injury. Critical-sized defects, exceeding the body’s natural healing ability, demand the use of temporary or permanent devices like artificial joints or bone substitutes. While titanium is a widely used material for bone replacement, its integration into the body remains limited. This often leads to the progressive loosening of the implant and the need for revision surgeries, which are technically challenging, are commonly associated with high complication rates, and impose a significant economic burden. To enhance implant osseointegration, numerous studies have focused on the development of surface functionalization techniques to improve the response of the body to the implant. Yet, the challenge of achieving reliable and long-lasting prostheses persists. In this work, we address this challenge by applying a robust and versatile biofunctionalization process followed by the decoration of the material with oligopeptides. We immobilize four different peptides (RGD, CS-1, IKVAV, PHSRN) on R-THAB® functionalized surfaces and find them to be highly stable in the long term. We also find that RGD is the best-performing peptide in in vitro cell cultures, enhancing adhesion, proliferation, and osteogenic differentiation of mesenchymal stem cells. To assess the in vivo effect of RGD-decorated Ti-6Al-4V implants, we develop a calvarial model in murine hosts. We find that the RGD-decoration remains stable for 1 week after the surgical procedure and reduces post-implantation macrophage-related inflammation. These results highlight the potential of peptide decoration on R-THAB® functionalized surfaces to expedite the development of novel metallic biomaterials with enhanced biocompatibility properties, thereby advancing the field of regenerative medicine. Full article
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<p>Long-term stability of FITC-labeled peptides immobilized on R-THAB<sup>®</sup> Ti-6Al-4V substrates through EDC/NHS chemistry. (<b>A</b>) Representative fluorescence microscopy images of RGD-FITC and CS-1-FITC incubated on R-THAB<sup>®</sup> Ti-6Al-4V without EDC/NHS (-EDC/NHS) or with EDC/NHS (+EDC/NHS). Samples are shown on day 0, 2 months, and 5 months after immobilization (scale bar = 270 μm). (<b>B</b>) Quantification of the mean fluorescence intensity measured from the attachment of each oligopeptide without EDC/NHS or with EDC/NHS on day 0 and after 2 and 5 months. The values are normalized to the background intensity and adjusted depending on the variations on the intensity of the microscope between time points. The data are shown as the mean ± SEM of at least 6 replicas per condition from two independent assays. The asterisks indicate significant differences between time points (paired <span class="html-italic">t</span>-test; one asterisk, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Adhesion analysis of MSCs seeded on polystyrene, bare Ti-6Al-4V and peptide-decorated R-THAB<sup>®</sup> Ti-6Al-4V. (<b>A</b>) Representative fluorescence microscopy images of calcein-positive MSCs cultured on polystyrene, bare Ti-6Al-4V, IKVAV-decorated Ti-6Al-4V, and PHSRN-decorated Ti-6Al-4V at 2 and 6 h after seeding (scale bar = 200 μm). (<b>B</b>) Number of attached cells/cm<sup>2</sup> at each time point. Data are shown as the mean ± the SEM of 6 replicas per temporal point and type of substrate from two independent assays. The asterisks denote significant differences between bare Ti-6Al-4V and each peptide-decorated R-THAB<sup>®</sup> Ti-6Al-4V (two-way ANOVA followed by Tukey’s test; one asterisk, <span class="html-italic">p</span> &lt; 0.05; two asterisks, <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Single cell force spectroscopy (SCFS) assay on peptide-decorated R-THAB<sup>®</sup> glasses displaying the detachment force values between the cell and peptide-decorated or the bare glasses. Data are shown as mean value ± SEM. The asterisks indicate significant differences in cell adhesion between bare glass and each peptide-decorated glass (one-way ANOVA followed by Tukey’s test; one asterisk, <span class="html-italic">p</span> &lt; 0.05; two asterisks, <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Inverted centrifugation assays of MSCs after 1 day of seeding on fibronectin-decorated glass, bare glass, and peptide-decorated R-THAB<sup>®</sup> glasses. (<b>A</b>) Fluorescence microscope images of calcein-positive MSCs cultured on fibronectin-decorated glass, bare glass, CS-1-decorated R-THAB<sup>®</sup> glass, and PHSRN-decorated R-THAB<sup>®</sup> glass before and after centrifugation (scale bar = 250 μm). (<b>B</b>) Percentage of cells still attached to the different surfaces after every centrifugation step (1, 2, or 8 RCF). Data are displayed as the means ± the SEM with at least 6 replicas from every condition obtained in two independent experiments. The blue and green asterisks denote statistically significant differences between bare and fibronectin coated glass, and between bare and IKVAV-decorated glass, respectively (two-way ANOVA followed by Tukey’s test; one asterisk, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Proliferation and survival analysis of MSCs seeded on polystyrene, bare Ti-6Al-4V, and RGD-decorated R-THAB<sup>®</sup> Ti-6Al-4V. (<b>A</b>) Representative fluorescence microscopy images of alive (calcein-positive—green) and dead cells (PI-positive—red) cultured on polystyrene, bare Ti-6Al-4V, and RGD-decorated Ti-6Al-4V for 3, 7, 10, and 20 days (scale bar = 240 μm). (<b>B</b>) Number of attached cells/cm<sup>2</sup> per time point. (<b>C</b>) Percentage of calcein-positive (alive) cells per time point. Data are shown as the means ± the SEM of at least 6 replicas per temporal point and type of substrate from two independent experiments. The black asterisks denote significant differences between polystyrene and RGD-decorated Ti-6Al-4V. The red asterisks denote significant differences between bare and RGD-decorated Ti-6Al-4V (two-way ANOVA followed by Tukey’s test; one asterisk, <span class="html-italic">p</span> &lt; 0.05; two asterisks, <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Osteoblastic differentiation assays performed on polystyrene, bare Ti-6Al-4V, and RGD-decorated R-THAB<sup>®</sup> Ti-6Al-4V. (<b>A</b>) Representative fluorescence microscopy images of MSCs with or without osteoblastic differentiation medium on polystyrene, bare Ti-6Al-4V, and RGD-decorated Ti-6Al-4V. ALP expression is stained green and the nucleus blue (scale bar = 100 μm). (<b>B</b>) Quantification of the CTCF inferred from ALP expression in each analyzed cell. Data are shown as the mean ± the SEM of at least 230 cells from 6 replicas per substrate. The asterisks denote significant differences in ALP expression between substrates (Kruskal–Wallis test followed by Dunn’s method; two asterisks, <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Calvarial model surgical procedure and in vivo stability of the (RGD-FITC)-decorated R-THAB<sup>®</sup> Ti-6Al-4V. (<b>A</b>) Schematic representation of the two steps that comprise the surgical model: craniotomy preparation and graft implantation. (<b>B</b>) Representative photographs of mouse scalps with 3 mm craniotomies and their time evolution (scale bar = 3 mm). (<b>C</b>) Optical photographs taken with the stereo microscope of (<b>a</b>) the front side and (<b>b</b>) the inner side of the implanted graft. (<b>D</b>) (<b>a</b>) Representative fluorescence microscope images of covalently immobilized (RGD-FITC)-decorated Ti-6Al-4V implants before, and 1 and 7 days after surgery (scale bar = 800 μm); (<b>b</b>) quantification of the mean fluorescence intensity inferred from the RGD-FITC peptide attached to the surface 1 and 7 days after surgery. Each sample was normalized by their fluorescence intensity before surgery. The green dotted line indicates the fluorescence loss with respect to the fluorescence intensity of the implant before implantation. Data are shown as the means ± the SEM of at least 6 replicas per time point obtained from two independent experiments (unpaired <span class="html-italic">t</span>-test).</p>
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<p>Characterization of the in vivo pro-inflammatory response to bare and RGD-decorated R-THAB<sup>®</sup> Ti-6Al-4V surfaces 2 days after implantation. (<b>A</b>) Representative fluorescence microscopy images of different cell populations on bare and RGD-decorated Ti-6Al-4V surfaces. The macrophage marker Iba1 is stained in red, the CD86 surface marker in green, and the nucleus in blue. Yellow arrows indicate Iba1+/CD86- cells, white arrows cells Iba1+/CD86+, and green arrows Iba1-/CD86+ cells (scale bar = 90 μm). (<b>B</b>) Quantification of the percentage of cells from each population on bare and RGD-decorated Ti-6Al-4V implants. Data are shown as the means ± the SEM of 5 samples from 5 mice per condition. The asterisks denote significant differences between bare and RGD-decorated implants (unpaired <span class="html-italic">t</span>-test; two asterisks, <span class="html-italic">p</span> &lt; 0.01).</p>
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30 pages, 3595 KiB  
Review
Extracellular Vesicles as Tools for Crossing the Blood–Brain Barrier to Treat Lysosomal Storage Diseases
by Giovanni Lerussi, Verónica Villagrasa-Araya, Marc Moltó-Abad, Mireia del Toro, Guillem Pintos-Morell, Joaquin Seras-Franzoso and Ibane Abasolo
Life 2025, 15(1), 70; https://doi.org/10.3390/life15010070 - 9 Jan 2025
Viewed by 1091
Abstract
Extracellular vesicles (EVs) are nanosized, membrane-bound structures that have emerged as promising tools for drug delivery, especially in the treatment of lysosomal storage disorders (LSDs) with central nervous system (CNS) involvement. This review highlights the unique properties of EVs, such as their biocompatibility, [...] Read more.
Extracellular vesicles (EVs) are nanosized, membrane-bound structures that have emerged as promising tools for drug delivery, especially in the treatment of lysosomal storage disorders (LSDs) with central nervous system (CNS) involvement. This review highlights the unique properties of EVs, such as their biocompatibility, capacity to cross the blood–brain barrier (BBB), and potential for therapeutic cargo loading, including that of enzymes and genetic material. Current therapies for LSDs, like enzyme replacement therapy (ERT), often fail to address neurological symptoms due to their inability to cross the BBB. EVs offer a viable alternative, allowing for targeted delivery to the CNS and improving therapeutic outcomes. We discuss recent advancements in the engineering and modification of EVs to enhance targeting, circulation time and cargo stability, and provide a detailed overview of their application in LSDs, such as Gaucher and Fabry diseases, and Sanfilippo syndrome. Despite their potential, challenges remain in scaling production, ensuring isolation purity, and meeting regulatory requirements. Future developments will focus on overcoming these barriers, paving the way for the clinical translation of EV-based therapies in LSDs and other CNS disorders. Full article
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<p>Multisystemic manifestations of lysosomal storage disorders (LSDs). Main disorders showing manifestations in various organs and tissues are indicated. The image does not aim to list all the manifestations of all the diseases, but instead, give an idea of the multisystemic nature of the LSDs.</p>
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<p>Timeline for the approval of LSD-specific therapies. For the sake of clarity, stem cell transplantation has not been included. Therapies: ERT—enzyme replacement therapy; SRT—substrate reduction therapy; CT—chaperone therapy; GT—gene therapy. Diseases: GD—Gaucher disease; FD—Fabry disease; MPS—mucopolysaccharidosis; NPC—Niemann–Pick type C; LAL-D—lysosomal acid lipase deficiency; ASMD—acid sphingomyelinase deficiency; CLN2; AM—alpha mannosidosis; MLD—metachromatic leukodystrophy. For the sake of clarity, stem cell transplantation has not been included in the scheme.</p>
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<p>Scheme of the loading strategies and the surface modification possibilities in engineered EVs.</p>
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<p>Different mechanisms of crossing the BBB by EVs. Transcellular mechanisms include macropinocytosis, adsorptive-mediated endocytosis, clathrin-mediated endocytosis and caveolin-mediated endocytosis, and imply that EVs cross the endothelial cell to be excreted by exocytosis. Paracellular mechanisms, by contrast, involve EVs moving through tight junctions between endothelial cells.</p>
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11 pages, 520 KiB  
Article
Usefulness of Serum Biomarkers in Predicting Anastomotic Leakage After Gastrectomy
by Diego Ramos, Enrique Gallego-Colón, Javier Mínguez, Ignacio Bodega, Pablo Priego and Francisca García-Moreno
Cancers 2025, 17(1), 125; https://doi.org/10.3390/cancers17010125 - 3 Jan 2025
Viewed by 612
Abstract
Background/Objectives: Anastomotic leakage (AL) is one of the most concerning complications following gastrectomy. The aim of this study was to assess and compare the predictive accuracy of C-reactive protein (CRP), procalcitonin (PCT), the neutrophil-to-lymphocyte ratio (NLR), the platelet-to-lymphocyte ratio (PLR), fibrinogen, and the [...] Read more.
Background/Objectives: Anastomotic leakage (AL) is one of the most concerning complications following gastrectomy. The aim of this study was to assess and compare the predictive accuracy of C-reactive protein (CRP), procalcitonin (PCT), the neutrophil-to-lymphocyte ratio (NLR), the platelet-to-lymphocyte ratio (PLR), fibrinogen, and the mean platelet volume (MPV) in the early diagnosis of post-gastrectomy AL. Methods: A prospective bicentric observational study was conducted including all patients undergoing elective gastrectomy between August 2018 and December 2022. The performance of the selected biomarkers in predicting the existence of AL within the first 7 postoperative days (PODs) was assessed. Results: A total of 107 patients were included for analysis. The incidence of AL was 20.56%, and the median day of diagnosis was on POD5 (interquartile range 4–6). CRP, PCT, the NLR, the PLR, and fibrinogen showed significant associations with the presence of AL (from POD2 for CRP and fibrinogen and from POD3 for PCT, NLR, and PLR). CRP demonstrated a superior predictive accuracy on POD4, with a threshold value of 181.4 mg/L (NPV 99%; AUC 0.87, p < 0.001); PCT demonstrated a superior predictive accuracy on POD7, with a threshold value of 0.13 μg/L (NPV 98%; AUC 0.84, p < 0.001); the NLR showed a superior predictive accuracy on POD6, with a threshold ratio of 6.77 (NPV 95%; AUC 0.86, p < 0.001); the PLR achieved a superior predictive accuracy on POD7, with a ratio of 234 (NPV 98%; AUC 0.71; p = 0.002); and fibrinogen demonstrated a superior predictive accuracy on POD5, with a threshold of 7.344 g/L (NPV 98%; AUC 0.74; p = 0.003). In the comparison of predictive accuracy, CPR, PCT, and the NLR were found to be superior to all other biomarkers. Conclusions: CRP, PCT, and the NLR are biomarkers with a sufficient predictive ability to clinically discard the presence of AL within the first postoperative week. Full article
(This article belongs to the Special Issue Advances in Abdominal Surgical Oncology and Intraperitoneal Therapies)
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<p>Postoperative changes in inflammatory markers. (<b>1</b>): CRP: C-reactive protein (mg/L); (<b>2</b>): PCT: procalcitonin (μg/L); (<b>3</b>): NLR: neutrophil-to-lymphocyte ratio; (<b>4</b>): PLR: platelet-to-lymphocyte ratio; (<b>5</b>): fibrinogen (g/L); (<b>6</b>): MPV: mean platelet volume (fL). <span class="html-italic">p</span>-values were calculated using the Mann–Whitney <span class="html-italic">U</span>-test.</p>
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18 pages, 5260 KiB  
Article
Characteristics of Noise Caused by Trains Passing on Urban Rail Transit Viaducts
by Lizhong Song, Jiong Zhang, Quanmin Liu, Liangtao Zhang and Xiaolong Wu
Sustainability 2025, 17(1), 94; https://doi.org/10.3390/su17010094 - 26 Dec 2024
Viewed by 563
Abstract
With the large-scale construction of urban rail transit viaducts in China, the noise problem caused by trains traversing these sections has become increasingly prominent and a key technical challenge that restricts the sustainable development of rail transit. There are two main noise sources [...] Read more.
With the large-scale construction of urban rail transit viaducts in China, the noise problem caused by trains traversing these sections has become increasingly prominent and a key technical challenge that restricts the sustainable development of rail transit. There are two main noise sources when trains pass on rail transit viaducts, namely, wheel-rail noise (WRN) and bridge-borne noise (BBN). However, most of the existing rail transit viaduct noise prediction models consider only a single noise source. In this study, a total noise prediction model incorporating both WRN and BBN was established using the finite element method (FEM), the boundary element method (BEM), and statistical energy analysis (SEA). The viaducts of Wuhan Metro Line 2 were selected as the research object, and noise tests of trains passing on the viaducts were carried out to validate the total noise prediction model. Based on the validated model, the spatial distribution characteristics and attenuation laws of the total noise were investigated, along with the influence of train speed on the total noise. The results show that the prediction model accurately simulated the total noise caused by trains passing on viaducts. When a train passed on the viaduct at a speed of 60 km/h, the total noise near the viaduct reached 88 dB(A) and decreased with the increase in the distance; at 120 m from the track centerline, the total noise decreased to less than 57 dB(A). As the distance increased, the total noise diminished across the entire frequency spectrum. Notably, low-frequency noise decayed at a slower rate than high-frequency noise. As the distance from the track centerline doubled, the total noise decreased by about 4.23 dB(A). The total noise increased with train speed. When the train speed doubled, the total noise at 30 m and 120 m from the track centerline increased by 6.32 dB(A) and 5.96 dB(A), respectively. The reason for this phenomenon is that the wheel-rail forces increase with the increase in train speed. This study will have important guiding significance and scientific value for the sustainable development of urban rail transit. Full article
(This article belongs to the Special Issue Sustainable Study of Railway Engineering and Rail Transportation)
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<p>Schematic diagram of train-track coupling vibration analysis model.</p>
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<p>Rail roughness spectrum.</p>
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<p>Spectra of wheel-rail force amplitudes at different speeds.</p>
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<p>Total noise prediction model.</p>
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<p>The viaduct of Wuhan Metro Line 2.</p>
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<p>Noise tests on Wuhan Metro Line 2.</p>
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<p>Comparison of prediction and test results of total noise. (<b>a</b>) Measuring point 7.5 m from the track centerline and 1.2 m above the rail surface. (<b>b</b>) Measuring point 7.5 m from the track centerline and 3.5 m above the rail surface. (<b>c</b>) Measuring point 25 m from the track centerline and 1.2 m above the rail surface. (<b>d</b>) Measuring point 25 m from the track centerline and 3.5 m above the rail surface.</p>
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<p>Comparison of prediction and test results of total noise. (<b>a</b>) Measuring point 7.5 m from the track centerline and 1.2 m above the rail surface. (<b>b</b>) Measuring point 7.5 m from the track centerline and 3.5 m above the rail surface. (<b>c</b>) Measuring point 25 m from the track centerline and 1.2 m above the rail surface. (<b>d</b>) Measuring point 25 m from the track centerline and 3.5 m above the rail surface.</p>
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<p>Total noise nephogram (unit: dB(A)).</p>
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<p>Noise spectra of field points at different distances. (<b>a</b>) Field points 1.2 m above ground. (<b>b</b>) Field points 1.2 m above rail surface.</p>
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<p>Total sound pressure levels of various field points at different distances.</p>
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<p>Total sound pressure level of each field point at different train speeds. (<b>a</b>) Field points 30 m from the track centerline. (<b>b</b>) Field points 120 m from the track centerline.</p>
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19 pages, 825 KiB  
Review
Performance of Biodegradable Active Packaging in the Preservation of Fresh-Cut Fruits: A Systematic Review
by Oscar T. Rodriguez, Manuel F. Valero, José A. Gómez-Tejedor and Luis Diaz
Polymers 2024, 16(24), 3518; https://doi.org/10.3390/polym16243518 - 18 Dec 2024
Viewed by 746
Abstract
Fresh-cutting fruits is a common practice in markets and households, but their short shelf life is a challenge. Active packaging is a prominent strategy for extending food shelf life. A systematic review was conducted following the PRISMA guidelines to explore the performance and [...] Read more.
Fresh-cutting fruits is a common practice in markets and households, but their short shelf life is a challenge. Active packaging is a prominent strategy for extending food shelf life. A systematic review was conducted following the PRISMA guidelines to explore the performance and materials used in biodegradable active packaging for fresh-cut fruits. Sixteen studies were included from a search performed in July 2024 on Scopus and Web of Science databases. Only research articles in English on biodegradable active films tested on cut fruits were selected. Polysaccharides were the most employed polymer in film matrices (87.5%). Antioxidant and anti-browning activities were the active film properties that were most developed (62.5%), while plant extracts and essential oils were the most employed active agents (56.3%), and fresh-cut apples were the most commonly tested fruit (56.3%). Appropriate antioxidant, antibacterial, and barrier properties for fresh-cut fruit packaging were determined. Furthermore, there is a wide range of experimental designs to evaluate shelf-life improvements. In each case, shelf life was successfully extended. The findings show that different storage conditions, fruits, and material configurations can lead to different shelf-life extension performances. Thus, biodegradable active packaging for fresh-cut fruits has a strong potential for growth in innovative, sustainable, and functional ways. Full article
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<p>PRISMA flow diagram [<a href="#B22-polymers-16-03518" class="html-bibr">22</a>].</p>
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<p>(<b>A</b>) Geographical distribution of research. (<b>B</b>) Publication distribution over the years.</p>
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17 pages, 1744 KiB  
Article
Modeling the Efficiency of Resource Consumption Management in Construction Under Sustainability Policy: Enriching the DSEM-ARIMA Model
by Pruethsan Sutthichaimethee, Grzegorz Mentel, Volodymyr Voloshyn, Halyna Mishchuk and Yuriy Bilan
Sustainability 2024, 16(24), 10945; https://doi.org/10.3390/su162410945 - 13 Dec 2024
Viewed by 714
Abstract
The aim of this research is to study the influence of factors affecting the efficiency of resource consumption under the sustainability policy based on using the DSEM-ARIMA (Dyadic Structural Equation Modeling based on the Autoregressive Integrated Moving Average) model. The study is performed [...] Read more.
The aim of this research is to study the influence of factors affecting the efficiency of resource consumption under the sustainability policy based on using the DSEM-ARIMA (Dyadic Structural Equation Modeling based on the Autoregressive Integrated Moving Average) model. The study is performed using the Thailand experience. The research findings indicate that continuous economic growth aligns with the country’s objectives, directly contributing to continuous social growth. This aligns with the country’s efficient planning. It demonstrates that the management aligns with the goal of achieving Thailand 5.0. Furthermore, considering the environmental aspect, it is found that economic and social growth directly impacts the ecological aspect due to the significant influence of resource consumption in the construction. The resource consumption in construction shows a growth rate increase of 264.59% (2043/2024), reaching 401.05 ktoe (2043), which exceeds the carrying capacity limit set at 250.25 ktoe, resulting in significant long-term environmental degradation. Additionally, considering the political aspect, it is found to have the greatest influence on the environment, exacerbating environmental damage beyond current levels. Therefore, the DSEM-ARIMA model establishes a new scenario policy, indicating that resource consumption in construction leads to environmental degradation reduced to 215.45 ktoe (2043), which does not exceed the carrying capacity. Thus, if this model is utilized, it can serve as a vital tool in formulating policies to steer the country’s growth toward Thailand 5.0 effectively. Full article
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<p>Research Process. Note: the color of the lines means the sequence of the analysis and the need to return to the initial stage in case of the negative test results on stages 2, 3, and 5, respectively.</p>
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<p>Characteristics of the DSEM-ARIMA model relationship.</p>
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<p>The relationship analysis results of the DSEM-ARIMA model. *** denotes significance α = 0.01, ** denotes significance α = 0.05.</p>
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<p>The future growth of resource consumption in construction (2024–2043).</p>
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31 pages, 441 KiB  
Review
The Emerging Role of Artificial Intelligence in Enhancing Energy Efficiency and Reducing GHG Emissions in Transport Systems
by Tymoteusz Miller, Irmina Durlik, Ewelina Kostecka, Adrianna Łobodzińska and Marcin Matuszak
Energies 2024, 17(24), 6271; https://doi.org/10.3390/en17246271 - 12 Dec 2024
Viewed by 1248
Abstract
The global transport sector, a significant contributor to energy consumption and greenhouse gas (GHG) emissions, requires innovative solutions to meet sustainability goals. Artificial intelligence (AI) has emerged as a transformative technology, offering opportunities to enhance energy efficiency and reduce GHG emissions in transport [...] Read more.
The global transport sector, a significant contributor to energy consumption and greenhouse gas (GHG) emissions, requires innovative solutions to meet sustainability goals. Artificial intelligence (AI) has emerged as a transformative technology, offering opportunities to enhance energy efficiency and reduce GHG emissions in transport systems. This study provides a comprehensive review of AI’s role in optimizing vehicle energy management, traffic flow, and alternative fuel technologies, such as hydrogen fuel cells and biofuels. It explores AI’s potential to drive advancements in electric and autonomous vehicles, shared mobility, and smart transportation systems. The economic analysis demonstrates the viability of AI-enhanced transport, considering Total Cost of Ownership (TCO) and cost-benefit outcomes. However, challenges such as data quality, computational demands, system integration, and ethical concerns must be addressed to fully harness AI’s potential. The study also highlights the policy implications of AI adoption, underscoring the need for supportive regulatory frameworks and energy policies that promote innovation while ensuring safety and fairness. Full article
16 pages, 2448 KiB  
Article
In Vitro Activity of Ampicillin Plus Ceftriaxone Against Non-faecalis and Non-faecium Enterococcal Isolates With/Without VanC Phenotype: Clinical Implications for Infective Endocarditis
by Javier García-González, María A. Cañas, Guillermo Cuervo, Marta Hernández-Meneses, Miguel A. Verdejo, Marta Bodro, Javier Díez de los Ríos, Oriol Gasch, Alba Ribera, Carles Falces, Andrés Perissinotti, Bárbara Vidal, Eduard Quintana, Asunción Moreno, Maria Piquet, Ignasi Roca, Mariana Fernández-Pittol, Sol M. San José-Villar, Cristina García-de-la-Mària, José M. Miró and the Hospital Clínic Endocarditis Study Groupadd Show full author list remove Hide full author list
Microorganisms 2024, 12(12), 2511; https://doi.org/10.3390/microorganisms12122511 - 5 Dec 2024
Viewed by 981
Abstract
(1) Background: Alternative antibiotics are needed to treat infective endocarditis (IE) caused by non-faecalis/non-faecium enterococci; we aimed to assess the in vitro activity of ampicillin plus ceftriaxone (AMP + CTR) against these enterococci and to describe its clinical efficacy in [...] Read more.
(1) Background: Alternative antibiotics are needed to treat infective endocarditis (IE) caused by non-faecalis/non-faecium enterococci; we aimed to assess the in vitro activity of ampicillin plus ceftriaxone (AMP + CTR) against these enterococci and to describe its clinical efficacy in IE cases. (2) Methods: Time–kill curves with standard (ISI) and high (IHI) inocula were performed to test VanC isolates [3 E. casseliflavus (ECAS) and 1 E. gallinarum (EGALL)] and non-VanC isolates [1 E. durans (EDUR), 1 E. hirae (EHIR) and 1 E. raffinosus (ERAF)]. The narrative literature review of IE cases treated with AMP + CTR was analyzed alongside three study cases. Clinical outcomes were relapse and death. (3) Results: Ampicillin plus gentamicin (AMP + GEN) showed synergistic and bactericidal activity against most isolates. AMP + CTR was synergistic at ISI for EGALL, EDUR, and EHIR and bactericidal against EHIR. At IHI, indifferent activity was observed for all isolates. In IE cases treated with AMP + CTR, it was only effective for EDUR and EHIR. Clinical information for EGALL IE is lacking. For IE caused by ECAS and ERAF, AMP + CTR seems suboptimal or ineffective, respectively. (4) AMP + CTR cannot be recommended for treating IE due to ECAS/ERAF. In contrast, this combination was effective in IE caused by EDUR/EHIR and could be recommended. Full article
(This article belongs to the Special Issue The Infective Endocarditis)
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<p>Ampicillin (AMP) plus gentamicin (GEN) time–kill curves for the study isolates: ECAS-1219, ECAS-1247, ECAS-1461, EDUR-440, EHIR-1400, ERAF-1465, and EGALL-PT. The isolates were classified in the VanC phenotype (<b>A</b>,<b>B</b>): (<b>A</b>) Initial standard inoculum (ISI) and (<b>B</b>) initial higher inoculum (IHI) or no VanC phenotype (<b>C</b>,<b>D</b>): (<b>C</b>) ISI and (<b>D</b>) IHI. The black circle indicates growth control; the inverted black triangle indicates GEN monotherapy; the black triangle indicates AMP monotherapy; and the red square indicates combined therapy. The blue line indicates bactericidal activity. At ISI, the isolates were incubated with AMP + GEN at concentrations of 1×MIC for both antibiotics. At IHI, the isolates were incubated with AMP + GEN at concentrations of 20 mg/L for AMP and 8 mg/L for GEN. Values are the mean standard deviations from two independent experiments.</p>
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<p>Ampicillin (AMP) plus gentamicin (GEN) time–kill curves for the study isolates: ECAS-1219, ECAS-1247, ECAS-1461, EDUR-440, EHIR-1400, ERAF-1465, and EGALL-PT. The isolates were classified in the VanC phenotype (<b>A</b>,<b>B</b>): (<b>A</b>) Initial standard inoculum (ISI) and (<b>B</b>) initial higher inoculum (IHI) or no VanC phenotype (<b>C</b>,<b>D</b>): (<b>C</b>) ISI and (<b>D</b>) IHI. The black circle indicates growth control; the inverted black triangle indicates GEN monotherapy; the black triangle indicates AMP monotherapy; and the red square indicates combined therapy. The blue line indicates bactericidal activity. At ISI, the isolates were incubated with AMP + GEN at concentrations of 1×MIC for both antibiotics. At IHI, the isolates were incubated with AMP + GEN at concentrations of 20 mg/L for AMP and 8 mg/L for GEN. Values are the mean standard deviations from two independent experiments.</p>
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<p>Ampicillin (AMP) plus ceftriaxone (CTR) time–kill curves for the study isolates: ECAS-1219, ECAS-1247, ECAS-1461, EDUR-440, EHIR-1400, ERAF-1465, and EGALL-PT. The isolates were classified in the VanC phenotype (<b>A</b>,<b>B</b>): (<b>A</b>) Initial standard inoculum (ISI) and (<b>B</b>) initial higher inoculum (IHI) or no VanC phenotype (<b>C</b>,<b>D</b>): (<b>C</b>) ISI and (<b>D</b>) IHI. The black circle indicates growth control; the inverted black triangle indicates CTR monotherapy; the black triangle indicates AMP monotherapy; and the red square indicates combined therapy. The blue line indicates bactericidal activity. At ISI, the isolates were incubated with AMP + CTR at concentrations of 1×MIC for both antibiotics. At IHI, the isolates were incubated with AMP + CTR at concentrations of 20 mg/L for AMP and 64 mg/L for CTR. Values are the mean standard deviations from two independent experiments.</p>
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<p>Ampicillin (AMP) plus ceftriaxone (CTR) time–kill curves for the study isolates: ECAS-1219, ECAS-1247, ECAS-1461, EDUR-440, EHIR-1400, ERAF-1465, and EGALL-PT. The isolates were classified in the VanC phenotype (<b>A</b>,<b>B</b>): (<b>A</b>) Initial standard inoculum (ISI) and (<b>B</b>) initial higher inoculum (IHI) or no VanC phenotype (<b>C</b>,<b>D</b>): (<b>C</b>) ISI and (<b>D</b>) IHI. The black circle indicates growth control; the inverted black triangle indicates CTR monotherapy; the black triangle indicates AMP monotherapy; and the red square indicates combined therapy. The blue line indicates bactericidal activity. At ISI, the isolates were incubated with AMP + CTR at concentrations of 1×MIC for both antibiotics. At IHI, the isolates were incubated with AMP + CTR at concentrations of 20 mg/L for AMP and 64 mg/L for CTR. Values are the mean standard deviations from two independent experiments.</p>
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<p>Results from the PFGE and FTIR analysis.</p>
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<p>Flowchart summarizing the selection of manuscripts for this narrative review. This work is licensed under CC BY 4.0. To view a copy of this license, visit: <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">https://creativecommons.org/licenses/by/4.0/</a> (accessed on 31 October 2024) Source: [<a href="#B28-microorganisms-12-02511" class="html-bibr">28</a>].</p>
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17 pages, 3632 KiB  
Article
Squalene in Nanoparticles Improves Antiproliferative Effect on Human Colon Carcinoma Cells Through Apoptosis by Disturbances in Redox Balance
by Seyed Hesamoddin Bidooki, Javier Quero, Javier Sánchez-Marco, Tania Herrero-Continente, Inés Marmol, Roberto Lasheras, Victor Sebastian, Manuel Arruebo, Jesús Osada and María Jesús Rodriguez-Yoldi
Int. J. Mol. Sci. 2024, 25(23), 13048; https://doi.org/10.3390/ijms252313048 - 4 Dec 2024
Viewed by 1123
Abstract
Squalene, a triterpene found in extra virgin olive oil, has therapeutic properties in diseases related to oxidative stress, such as cancer. However, its hydrophobic nature and susceptibility to oxidation limit its bioavailability outside of olive oil. To expand its applications, alternative delivery methods [...] Read more.
Squalene, a triterpene found in extra virgin olive oil, has therapeutic properties in diseases related to oxidative stress, such as cancer. However, its hydrophobic nature and susceptibility to oxidation limit its bioavailability outside of olive oil. To expand its applications, alternative delivery methods are necessary. The objective of the present study was to examine the impact of squalene encapsulated in PLGA (poly(lactic-co-glycolic) acid) nanoparticles (PLGA + Sq) on the proliferation of human colon carcinoma Caco-2 cells, as well as its underlying mechanism of action. The findings demonstrated that PLGA + Sq exert no influence on differentiated cells; however, it is capable of reducing the proliferation of undifferentiated Caco-2 cells through apoptosis and cell cycle arrest in the G1 phase. This effect was initiated by the release of cytochrome c into the cytoplasm and the subsequent activation of caspase-3. Furthermore, squalene exhibited pro-oxidant activity, as evidenced by an increase in intracellular ROS (reactive oxygen species) levels. The results of the squalene effect on genes associated with cell death, inflammation, and the cell cycle indicate that its antiproliferative effect may be post-transcriptional. In conclusion, PLGA + Sq demonstrate an antiproliferative effect on Caco-2 cells through apoptosis by altering redox balance, suggesting squalene’s potential as a functional food ingredient for colorectal cancer prevention. Full article
(This article belongs to the Section Bioactives and Nutraceuticals)
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Graphical abstract

Graphical abstract
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<p>Viability effect on undifferentiated Caco-2 cells incubated with different squalene concentrations using DMEM, DMSO, EtOH, and PLGA vehicles for 72 h.</p>
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<p>Time and dose-response viability effect of a range of PLGA + Sq on undifferentiated Caco-2 cells.</p>
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<p>Differentiated Caco-2 cells incubated for 72 h with 70 or 140 μg/mL PLGA + Sq. PLGA 70 or 140 μg/mL (without Sq) represent the PLGA-NPs required for the indicated Sq concentration. C, control, refers to untreated cells.</p>
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<p>In vitro cellular uptake of squalene. Caco-2 cells were incubated with 140 μg/mL of PLGA + Sq NPs and PLGA NPs for a period of 24 h. * <span class="html-italic">p</span> &lt; 0.05 vs. PLGA.</p>
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<p>Incubation of undifferentiated Caco-2 cells for 72 h. (<b>A</b>) Negative control, referring to the untreated cells, (<b>B</b>) PLGA, (<b>C</b>) PLGA + Sq at IC<sub>50</sub> concentration (140 μg/mL). Percentages of alive (A3), necrotic (A1), early apoptotic (A4) and late apoptotic (A2) cells are indicated.</p>
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<p>Undifferentiated Caco-2 cells with mitochondrial cytochrome c after 72 h incubation with/without PLGA or Sq (140 μg/mL). (<b>A</b>) Negative control, referring to the untreated cells, (<b>B</b>) PLGA, (<b>C</b>) PLGA + Sq. A1: cytochrome c released, A2: cytochrome c retained, A3 and A4: debris and dead cells.</p>
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<p>Percentage of undifferentiated Caco-2 cells with active caspase-3 after 72 h incubation with/without PLGA + Sq (140 μg/mL). * <span class="html-italic">p</span> &lt; 0.05 vs. control.</p>
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<p>Measurement of the cell cycle after a 72 h incubation on undifferentiated Caco-2 cells (<b>A</b>) Negative control, referring to the untreated cells, (<b>B</b>) PLGA, (<b>C</b>) PLGA + Sq (IC<sub>50</sub>). From left to right: red peak: G1, black hatched peak: S, red peak: G2.</p>
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<p>Measurement of ROS levels on undifferentiated Caco-2 cells after 24 h incubation with PLGA + Sq and PLGA alone. PLGA 70 or 140 μg/mL (without Sq) represents the PLGA-NPs required for the indicated Sq concentration. * <span class="html-italic">p</span> &lt; 0.05 vs. negative control (without PLGA and Sq). C, control, refers to untreated cells.</p>
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<p>Cell viability measurement after pretreatment of cells with 5 mM NAC for 2 h followed by treatment of cells with 140 μg/mM PLGA + Sq for 72 h. * <span class="html-italic">p</span> &lt; 0.05 vs. control. C, control, refers to untreated cells.</p>
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<p>Differentiated Caco-2 cells incubated with 70 or 140 mg/mL PLGA in the presence or absence of squalene. PLGA 70 or 140 μg/mL (without Sq) represents the PLGA-NPs required for the indicated Sq concentration. C, control, refers to untreated cells.</p>
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<p>Evaluation of the effect of PLGA + Sq nanoparticles on cytotoxicity and ROS modulation in undifferentiated and differentiated Caco-2 cells, and AML12 cells [<a href="#B16-ijms-25-13048" class="html-bibr">16</a>,<a href="#B49-ijms-25-13048" class="html-bibr">49</a>].</p>
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37 pages, 4052 KiB  
Article
Should South Asian Stock Market Investors Think Globally? Investigating Safe Haven Properties and Hedging Effectiveness
by Md. Abu Issa Gazi, Md. Nahiduzzaman, Sanjoy Kumar Sarker, Mohammad Bin Amin, Md. Ahsan Kabir, Fadoua Kouki, Abdul Rahman bin S Senathirajah and László Erdey
Economies 2024, 12(11), 309; https://doi.org/10.3390/economies12110309 - 15 Nov 2024
Viewed by 1286
Abstract
In this study, we examine the critical question of whether global equity and bond assets (both green and non-green) offer effective hedging and safe haven properties against stock market risks in South Asia, with a focus on Bangladesh, India, Pakistan, and Sri Lanka. [...] Read more.
In this study, we examine the critical question of whether global equity and bond assets (both green and non-green) offer effective hedging and safe haven properties against stock market risks in South Asia, with a focus on Bangladesh, India, Pakistan, and Sri Lanka. The increasing integration of global financial markets and the volatility experienced during recent economic crises raise important questions regarding the resilience of South Asian markets and the potential protective role of global assets. Drawing on methods like VaR and CVaR tail risk estimators, the DCC-GJR-GARCH time-varying connectedness approach, and cost-effectiveness tools for hedging, we analyze data spanning from 2014 to 2022 to assess these relationships comprehensively. Our findings demonstrate that stock markets in Bangladesh experience lower levels of downside risk in each quantile; however, safe haven properties from the global financial markets are effective for Bangladeshi, Indian, and Pakistani stock markets during the crisis period. Meanwhile, the Sri Lankan stock market neither receives hedging usefulness nor safe haven benefits from the same marketplaces. Additionally, global green assets, specifically green bond assets, are more reliable sources to ensure the safest investment for South Asian investors. Finally, the portfolio implications suggest that while traditional global equity assets offer ideal portfolio weights for South Asian investors, global equity and bond assets (both green and non-green) are the cheapest hedgers for equity investors, particularly in the Bangladeshi, Pakistani, and Sri Lankan stock markets. Moreover, these results hold significant implications for investors seeking to optimize portfolios and manage risk, as well as for policymakers aiming to strengthen regional market resilience. By clarifying the protective capacities of global assets, particularly green ones, our study contributes to a nuanced understanding of portfolio diversification and financial stability strategies within emerging markets in South Asia. Full article
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<p>Price dynamic graph of each index [Notes: The vertical axis of the graph represents price, while the horizontal axis denotes the time period].</p>
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<p>Return dynamic graph of each index [Notes: The vertical axis of the graph represents return as percentage, while the horizontal axis denotes the time period].</p>
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<p>Return dynamic graph of each index [Notes: The vertical axis of the graph represents return as percentage, while the horizontal axis denotes the time period].</p>
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<p>Dynamic conditional correlation plots between global financial markets and the stock market of Bangladesh.</p>
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<p>Dynamic conditional correlation plots between global financial markets and the stock market of India.</p>
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<p>Dynamic conditional correlation plots between global financial markets and the stock market of Pakistan.</p>
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<p>Dynamic conditional correlation plots between global financial markets and the stock market of Sri Lanka.</p>
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13 pages, 2333 KiB  
Article
Synthesis of a Pd2L4 Hydrazone Molecular Cage Through Multiple Reaction Pathways
by Giovanni Montà-González, Ramón Martínez-Máñez and Vicente Martí-Centelles
Int. J. Mol. Sci. 2024, 25(22), 11861; https://doi.org/10.3390/ijms252211861 - 5 Nov 2024
Viewed by 917
Abstract
Molecular cages are preorganized molecules with a central cavity, typically formed through the reaction of their building blocks through chemical bonds. This requires, in most cases, forming and breaking reversible bonds during the cage formation reaction pathway for error correction to drive the [...] Read more.
Molecular cages are preorganized molecules with a central cavity, typically formed through the reaction of their building blocks through chemical bonds. This requires, in most cases, forming and breaking reversible bonds during the cage formation reaction pathway for error correction to drive the reaction to the cage product. In this work, we focus on both Pd–ligand and hydrazone bonds implemented in the structure of a Pd2L4 hydrazone molecular cage. As the cage contains two different types of reversible bonds, we envisaged a cage formation comparative study by performing the synthesis of the cage through three different reaction pathways involving the formation of Pd–ligand bonds, hydrazone bonds, or a combination of both. The three reaction pathways produce the cage with yields ranging from 73% to 79%. Despite the complexity of the reaction, the cage is formed in a high yield, even for the reaction pathway that involves the formation of 16 bonds. This research paves the way for more sophisticated cage designs through complex reaction pathways. Full article
(This article belongs to the Special Issue Molecular Cages: Design, Synthesis, and Applications)
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<p>Schematic representation of the three reaction pathways for the synthesis of a Pd<sub>2</sub>L<sub>4</sub> cage containing hydrazone and Pd–pyridine bonds. In the figura, carbon atoms in nicotinaldehyde are shown in green, while carbon atoms in 4,4′-oxydi(benzohydrazide) are colored cyan. Oxygen atoms are represented in red, nitrogen atoms in blue, hydrogen atoms in white, and Pd<sup>2+</sup> ions in dark cyan.</p>
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<p>The three possible reaction pathways for the synthesis of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> by Pd–pyridine and hydrazone bond formation. The lettering of <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> corresponds to the assignment of the <sup>1</sup>H NMR signals. The molecular model of <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub>, in which non-polar hydrogen atoms have been omitted for clarity, has the following color scheme: C, green; O, red; N, blue; H, white; and Pd<sup>2+</sup>, dark cyan. Note that <b>C1</b> = [Pd<sub>2</sub>L<sub>4</sub>]<sup>4+</sup>; therefore, four nitrate counterions are required, i.e., <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub>.</p>
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<p>Evolution of the <sup>1</sup>H NMR (400 MHz, DMSO-<span class="html-italic">d</span><sub>6</sub>) for the synthesis of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> through reaction pathway 1 from <b>1</b> and <b>2</b>·(NO<sub>3</sub>)<sub>2</sub>. The signal at 6.86 ppm corresponds to 1,4-dimethoxybenzene used as an internal standard. The assignment of cage signals a–h is shown in <a href="#ijms-25-11861-f002" class="html-fig">Figure 2</a>. Due to the complexity of the cage formation reaction, the signals of building blocks and intermediates are not assigned. We were only able to assign the set of signals at 10.1, 9.1, 8.9, 8.3, and 7.6 ppm to nicotinaldehyde.</p>
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<p>Evolution of the <sup>1</sup>H NMR (400 MHz, DMSO-<span class="html-italic">d</span><sub>6</sub>) for the synthesis of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> through reaction pathway 2 from <b>3</b> and palladium(II) nitrate dihydrate. The signal at 6.86 ppm corresponds to 1,4-dimethoxybenzene used as an internal standard. The assignment of cage signals a–h is shown in <a href="#ijms-25-11861-f002" class="html-fig">Figure 2</a>. Due to the complexity of the cage formation reaction, the signals of building blocks and intermediates are not assigned.</p>
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<p>Evolution of the <sup>1</sup>H NMR (400 MHz, DMSO-<span class="html-italic">d</span><sub>6</sub>) for the synthesis of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> through reaction pathway 3 from dihydrazide <b>1</b>, palladium(II) nitrate dihydrate, and nicotinaldehyde. The signal at 6.86 ppm corresponds to 1,4-dimethoxybenzene used as an internal standard. The assignment of cage signals a–h is shown in <a href="#ijms-25-11861-f002" class="html-fig">Figure 2</a>. Due to the complexity of the cage formation reaction, the signals of building blocks and intermediates are not assigned. We were only able to assign the set of signals at 10.1, 9.1, 8.9, 8.3, and 7.6 ppm to nicotinaldehyde.</p>
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<p>Evolution of the cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> yield for the cage formation reaction through reaction pathways 1 (green), 2 (orange), and 3 (blue). The inset plot shows the first 7 h of reaction. Cage formation yields have been determined by <sup>1</sup>H NMR using the integrals of the signals of the cage and 1,4-dimethoxybenzene which has been used as an internal standard.</p>
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<p>Comparison of the <sup>1</sup>H NMR obtained at 55 h for the formation reaction of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> through reaction pathways 1, 2, and 3. The signal at 6.86 ppm corresponds to 1,4-dimethoxybenzene used as an internal standard. The signal at 10.1 ppm corresponds to the aldehyde group of unreacted nicotinaldehyde.</p>
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<p>(<b>a</b>) Crystal structure of cage <b>C1</b>·(NO<sub>3</sub>)<sub>4</sub> (CCDC 2295536, see ref [<a href="#B31-ijms-25-11861" class="html-bibr">31</a>]). (<b>b</b>) Chemical representation of the structure of cage <b>C1</b> highlighting the ideal 120° angle of the ligand. (<b>c</b>–<b>e</b>) Conformational searches performed at MMFF level of theory using the software Wavefunction Spartan 20 (overlay of the most stable conformers found in a 2 kcal/mol energy window). The molecular models, in which non-polar hydrogen atoms have been omitted for clarity, have the following color scheme: C, green; O, red; N, blue; H, white; and Pd<sup>2+</sup>, dark cyan.</p>
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