Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Cython bindings and Python interface to HMMER3.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Unicode Extended grapheme clusters in nanoseconds
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.
Sam is a flexible MCMC sampler for Python, designed for astrophysical applications.
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
PyARAGORN offers Cython bindings and a Python interface to ARAGORN, a tool for finding (t|mt|tm)RNA genes. Explore the code and contribute to the project on GitHub! 🐙🌟
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