8000 2021.3 by javierggt · Pull Request #610 · sot/skare3 · GitHub
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Merged
merged 3 commits into from
Apr 19, 2021
Merged

2021.3 #610

merged 3 commits into from
Apr 19, 2021

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@javierggt javierggt commented Mar 2, 2021 •
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ska3-matlab 2021.3

Summary:

This is an incremental update of ska3-matlab with package changes to support the expanded AGASC supplement.

Interface Impacts:

AGASC access

Code that uses the agasc Python package to access star data will use updated magnitude information from the AGASC supplement by default. This can be controlled by the AGASC_SUPPLEMENT_ENABLED environment variable, by use of the agasc.set_supplement_enabled() method, or by explicit use of the use_supplement argument in the methods. See https://sot.github.io/agasc/api.html for the agasc documentation as needed.

Testing:

Current release candidate is available for testing in the test conda channel:

conda create -n ska3-matlab-2021.3 \
    --override-channels -c https://icxc.cfa.harvard.edu/aspect/ska3-conda/test \
    -c https://icxc.cfa.harvard.edu/aspect/ska3-conda/flight \
    ska3-matlab

The version of the agasc supplement file that will be promoted with ska3-matlab 2021.3 is:

https://cxc.cfa.harvard.edu/mta/ASPECT/agasc/supplement/flight-promotion-2021.3/agasc_supplement.h5

(md5sum f676a119760405813c85823c96a0bc9e ).

Review

Deployment:

Code changes

ska3-matlab changes (2020.13+shiny -> 2021.3rc1)

New Packages

  • jobwatch: 0.2.0

Updated Packages

  • aca_hi_bgd: 0.1.4 -> 0.1.5 (0.1.4 -> 0.1.5)
    • PR 9 (jeanconn): Rearrange processing at end to avoid reprocessing
  • aca_view: 0.4.1 -> 0.6.0 (0.4.1 -> 0.5.0 -> 0.6.0)
    • PR 64 (javierggt): Data service
    • PR 65 (javierggt): Fix so aca_view can realistically be used in real-time mode.
  • aca_weekly_report: 0.1.3 -> 0.1.5 (0.1.3 -> 0.1.4 -> 0.1.5)
    • PR 7 (jeanconn): Fix the type of the days-back option
    • PR 9 (jeanconn): Update task_schedule.cfg
  • acdc: 4.7.0 -> 4.7.3 (4.7.0 -> 4.7.1 -> 4.7.2 -> 4.7.3)
    • PR 59 (taldcroft): Catch another source of Telemetry Gap Error
    • PR 60 (jeanconn): Update report link
    • PR 61 (taldcroft): Adding a couple of logging messages
  • acis_thermal_check: 3.2.1 -> 3.5.0 (3.2.1 -> 3.3.0 -> 3.4.0 -> 3.4.1 -> 3.5.0)
    • PR 34 (jzuhone): Handles Maneuver-only loads, improve regression testing
    • PR 35 (jzuhone): Re-issue Shiny PR
    • PR 36 (jzuhone): Make regression testing work on standalone platforms
    • PR 37 (jzuhone): Refactoring of limit handling, allowing for more customizations, use cxotime
  • acisfp_check: 3.2.0 -> 3.5.0 (3.2.0 -> 3.3.0 -> 3.4.0 -> 3.5.0)
    • PR 27 (jzuhone): Refactor tests to match new signature
    • PR 28 (jzuhone): Update answers post-shiny
    • PR 29 (jzuhone): Simplification of code, use cxotime, fixing bugs with violations reporting
  • acispy: 2.0.1.dev12+gc5410da -> 2.1.0 (2.0.1.dev12+gc5410da -> v1.3.0 -> v1.5.0 -> v1.6.0 -> v1.8.0 -> v1.9.0 -> 2.0.0 -> 2.1.0)
    • PR 3 (jzuhone): Remove command-line scripts from ACISpy
    • PR 5 (jzuhone): Shiny workflow update
    • PR 6 (jzuhone): Shiny workflow update
    • PR 4 (jzuhone): Always propagate right-side y-axis
  • agasc: 4.10.1 -> 4.11.0 (4.10.1 -> 4.10.2 -> 4.11.0)
    • PR 54 (javierggt): Fixes in supplement update script (start/stop, input/output, docs)
    • PR 72 (taldcroft): Add flake8 check to GitHub workflows
    • PR 56 (taldcroft): Improved access to AGASC supplement
    • PR 58 (taldcroft): Faster get_stars() function
    • PR 55 (taldcroft): Handle bad-stars and obs status together
    • PR 77 (javierggt): Flake8
    • PR 76 (javierggt): Bugfixes
    • PR 78 (javierggt): Improved logging
    • PR 82 (javierggt): Obs status
    • PR 85 (javierggt): Added supplement versions table
    • PR 83 (javierggt): Auto yaml
    • PR 86 (javierggt): Added a mechanism to set mag_aca and mag_aca_err manually in the supplement, and a unique star-observation ID
    • PR 92 (javierggt): Added a mechanism to log command-line arguments to be able to re-run
    • PR 100 (javierggt): Fix "telemetry mismatch" error
    • PR 101 (javierggt): Rename observation_id
    • PR 105 (javierggt): Fixture to monkeypatch builtin open function
  • backstop_history: 1.2.0 -> 1.4.0 (1.2.0 -> 1.3.0 -> 1.4.0)
    • PR 17 (Gregg140): Modifications to Baskstop History to accommodate data structure change…
    • PR 18 (jzuhone): Replace Chandra.Time with cxotime
  • bep_pcb_check: 3.0.0 -> 3.3.0 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.3.0)
    • PR 2 (jzuhone): Shiny workflow update
    • PR 3 (jzuhone): Shiny workflow update
    • PR 4 (jzuhone): Refactor tests to match new signature
    • PR 5 (jzuhone): Update answers for shiny
    • PR 6 (jzuhone): Update regression testing
  • chandra_aca: 4.31.1 -> 4.32.0 (4.31.1 -> 4.32.0)
    • PR 113 (javierggt): Fetch ACA telemetry from MAUDE using blobs
    • PR 114 (taldcroft): Add calc_target_offsets function
  • cxotime: 3.2.3 -> 3.2.5 (3.2.3 -> 3.2.4 -> 3.2.5)
    • PR 24 (jeanconn): Astropy 4.2 compatibility: modified "import erfa" statement
    • PR 25 (taldcroft): Ignore ERFA dubious year warning
  • dea_check: 3.1.0 -> 3.4.0 (3.1.0 -> 3.2.0 -> 3.3.0 -> 3.4.0)
    • PR 24 (jzuhone): Shiny workflow update
    • PR 25 (jzuhone): Shiny workflow update
    • PR 28 (jzuhone): Refactor tests to match new signature
    • PR 29 (jzuhone): Update answers for shiny
    • PR 30 (jzuhone): Update regression testing
  • dpa_check: 3.0.0 -> 3.3.0 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.3.0)
    • PR 22 (jzuhone): Shiny workflow update
    • PR 23 (jzuhone): Shiny workflow update
    • PR 26 (jzuhone): Refactor tests to match new signature
    • PR 27 (jzuhone): Update answers for shiny
    • PR 28 (jzuhone): Add customizations to support checking +12 degC/0 FEPs violations, other minor updates
  • fep1_actel_check: 3.0.0 -> 3.3.0 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.3.0)
    • PR 2 (jzuhone): Shiny workflow update
    • PR 3 (jzuhone): Shiny workflow update
    • PR 4 (jzuhone): Refactor tests to match new signature
    • PR 5 (jzuhone): Update answers for shiny
    • PR 6 (jzuhone): Update regression testing
  • fep1_mong_check: 3.0.0 -> 3.3.0 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.3.0)
    • PR 2 (jzuhone): Shiny workflow update
    • PR 3 (jzuhone): Shiny workflow update
    • PR 4 (jzuhone): Refactor tests to match new signature
    • PR 5 (jzuhone): Update answers for shiny
    • PR 6 (jzuhone): Update regression testing
  • hopper: 4.5.0 -> 4.5.1 (4.5.0 -> 4.5.1)
    • PR 20 (jeanconn): Package/install the tests
  • kadi: 5.4.0 -> 5.5.1 (5.4.0 -> 5.5.0 -> 5.5.1)
    • PR 196 (taldcroft): Handle cmds.h5 resource unavailable error
    • PR 195 (taldcroft): Add Ska.ParseCM compatibility + read_backstop function
    • PR 197 (taldcroft): Add test of creating cmds archive and retry opening cmds.h5
    • PR 199 (taldcroft): Fix bug getting states starting between AOUPTARQ and AOMANUVR
  • maude: 3.4.0 -> 3.6.0 (3.4.0 -> 3.5.0 -> 3.6.0)
    • PR 30 (taldcroft): Use LazyDict from ska_helpers.utils
    • PR 29 (taldcroft): Allow access without credentials when possible
    • PR 31 (javierggt): added blobs_to_table function
    • PR 32 (taldcroft): Do not assign defaults for start/stop times + exception handling
    • PR 33 (taldcroft): Fix chunks query when MAUDE returns no data in last chunk
  • mica: 4.23.0 -> 4.25.0 (4.23.0 -> 4.24.0 -> 4.25.0)
    • PR 249 (jeanconn): More centroid_dashboard tweaks
    • PR 250 (jeanconn): Minor V&V fixes
    • PR 251 (taldcroft): Add list of available content types to asp_l1.get_files
    • PR 253 (jeanconn): Increase an ASOL quat vs OBC quat test tolerance by 4 arcsecs in roll
    • PR 252 (jeanconn): L0 ingest issues (both shiny and repro V)
    • PR 254 (taldcroft): A few small V&V and report updates
    • PR 241 (taldcroft): Use vectorized Quat
    • PR 255 (jeanconn): Fix script default to actually save plots
    • PR 256 (jeanconn): Skip report vv warn if no sybase passwd file for db
    • PR 257 (jeanconn): Avoid vv obspar race condition
  • parse_cm: 3.5.2 -> 3.6.0 (3.5.2 -> 3.6.0)
    • PR 23 (javierggt): Shiny workflow update
    • PR 24 (javierggt): Shiny workflow update
    • PR 29 (taldcroft): Add docs and modernize code
    • PR 26 (taldcroft): fixed bug skipping the last line of an OBS block
    • PR 28 (taldcroft): Support full parsing of obs request per OP19
    • PR 30 (taldcroft): Add cmds property to return kadi.commands.CommandTable version
  • perigee_health_plots: 0.1.2 -> 0.1.3 (0.1.2 -> 0.1.3)
    • PR 18 (jeanconn): Use config DAVCSDTEMP_PLOT xlim for dtemp default lims
  • proseco: 4.10.0 -> 4.12.0 (4.10.0 -> 4.11.0 -> 4.12.0 -> 4.12.1)
    • PR 349 (taldcroft): Built-in function for diffing ACA catalogs
    • PR 345 (taldcroft): Use AGASC supplement in proseco
    • PR 351 (taldcroft): Fix problem from table API change in astropy 4.2
  • psmc_check: 3.0.0 -> 3.3.0 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.3.0)
    • PR 21 (jzuhone): Shiny workflow update
    • PR 22 (jzuhone): Shiny workflow update
    • PR 23 (jzuhone): Refactor tests to match new signature
    • PR 24 (jzuhone): Updating answers for shiny
    • PR 25 (jzuhone): Update regression testing
  • ska-sphinx-theme: 1.2.dev0 -> 1.3.0 (1.2.dev0 -> 1.3.0)
    • PR 2 (astrofrog): Update sphinx URL that gets redirected
    • PR 6 (astrofrog): Remove deprecated use of script_files
    • PR 4 (astrofrog): Update layout.html file in sphinx to add top menubar to astropy docs
    • PR 8 (astrofrog): Change css styling to render dropdown menu horizontal instead of vertical
    • PR 1 (javierggt): Homepage menu
  • ska.engarchive: 4.50.1 -> 4.52.0 (4.50.1 -> 4.51.0 -> 4.52.0)
    • PR 209 (taldcroft): Better caching in fetch
    • PR 210 (taldcroft): Update docs shiny
    • PR 211 (taldcroft): Move sync archive update into normal task schedule
    • PR 213 (taldcroft): Update flake8.yml to Python 3.8
    • PR 217 (taldcroft): Fix file_defs.py for PEP8
    • PR 215 (jeanconn): Fix sync index column order to match order from astropy 4.0
    • PR 214 (taldcroft): Retry tables open file
  • ska3-core: 2020.13+shiny -> 2021.2
  • ska_helpers: 0.3.0 -> 0.5.0 (0.3.0 -> 0.4.0 -> 0.5.0)
    • PR 17 (taldcroft): Add retry decorator and function wrapper
    • PR 18 (taldcroft): Add retry and tests sub-packages
    • PR 20 (taldcroft): Add lru_cache_timed decorator
    • PR 19 (javierggt): add detail about all exceptions in ska_helpers.retry
    • PR 21 (taldcroft): Add tables_open_file func to retry opening
  • skare3_tools: 1.0.1 -> 1.0.3 (1.0.1 -> 1.0.2 -> 1.0.3)
    • PR 73 (javierggt): deal with default branch
    • PR 74 (javierggt): Improve info provided by ska3_update_summary
    • PR 76 (javierggt): skare3_tools.packages fixes for when ska3-matlab or ska3-flight are not in the conda channel
    • PR 75 (javierggt): added skare3_promote
    • PR 78 (javierggt): Fix release description so PR links are full URIs
  • sparkles: 4.7.0 -> 4.8.0 (4.7.0 -> 4.8.0)
    • PR 149 (taldcroft): Update tests for AGASC supplement disable as needed
  • testr: 4.5.0 -> 4.6.0 (4.5.0 -> 4.6.0)
    • PR 34 (taldcroft): Add functionality to skip tests via skip.yml in package dir

ska3-core changes (2020.13+shiny -> 2021.2)

New Packages

  • commonmark: 0.9.1
  • future: 0.18.2
  • iniconfig: 1.1.1
  • krb5: 1.18.2
  • libcurl: 7.71.1
  • libsolv: 0.7.14 (OSX) 0.7.16 (linux) 0.7.17 (windows)
  • libssh2: 1.9.0
  • mamba: 0.4.2 (OS X), 0.5.1 (linux, windows)
  • plotly: 4.14.3
  • pyerfa: 1.7.1.1
  • python-kaleido: 0.0.3
  • python_abi: 3.8
  • retrying: 1.3.3
  • sphinx-argparse: 0.2.5

Updated Packages

  • astropy: 4.0.1.post1 -> 4.2
  • bleach: 3.1.5 -> 3.3.0
  • ca-certificates: 2020.6.24 -> 2021.1.19
  • certifi: 2020.6.20 -> 2020.12.5
  • openssl: 1.1.1g -> 1.1.1i
  • pytest: 5.4.3 -> 6.2.0
  • sherpa: 4.12.1 -> 4.12.2

Related Issues

Fixes #609
Fixes #612
Fixes #613
Fixes #614

@javierggt javierggt mentioned this pull request Apr 13, 2021
Merged
@javierggt javierggt merged commit 8a184c9 into master Apr 19, 2021
@javierggt javierggt deleted the 2021.3 branch April 19, 2021 18:56
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Update sot/proseco to Release 4.12.1 Update sot/agasc to Release 4.11.0 Update sot/sparkles to Release 4.8.0 Release ska3-matlab 2021.3
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