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Software gardening...
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Software gardening...

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@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening

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Showing results

TPC-H benchmark data generation in pure Rust

Rust 84 12 Updated Apr 30, 2025

scivision: a framework for scientific image analysis

JavaScript 99 40 Updated May 27, 2025
Python 30 4 Updated May 1, 2025

An experiment to query Xarray datasets with SQL

Python 32 3 Updated Aug 4, 2024

Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.

Python 6,094 2,529 Updated May 27, 2025

rclone python wrapper

Python 164 29 Updated May 26, 2025

Collecting guidance, documents, examples, templates for open-source software project, such as on governance, roadmaps, contributing, license, code of conduct

56 14 Updated Apr 21, 2025

🌶️ Create lightweight schema.org descriptions of your datasets

R 163 26 Updated Jan 16, 2022

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Rust 1,699 210 Updated May 14, 2025

Jinja2 Linter CLI

Python 64 10 Updated May 27, 2025

A linter for Jinja-like templates

Python 70 25 Updated Jun 1, 2023

Virtual Python Environment builder

Python 4,916 1,052 Updated May 27, 2025

Image restoration for fluorescence microscopy

Python 308 83 Updated Oct 5, 2024

DoCO, the Document Components Ontology, is an ontology for describing the component parts of a bibliographic document. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologi…

12 1 Updated Sep 7, 2019

Create web-based user interfaces with Python. The nice way.

Python 12,419 757 Updated May 27, 2025

Access to Biological Web Services from Python.

Python 300 64 Updated May 19, 2025

JupyterLab desktop application, based on Electron.

TypeScript 4,004 416 Updated Dec 18, 2024

Python 3.8+ toolbox for submitting jobs to Slurm

Python 1,438 138 Updated May 21, 2025

A high efficiency binary format for sequencing data

Rust 50 2 Updated May 22, 2025

Arc Virtual Cell Atlas

Jupyter Notebook 289 29 Updated May 6, 2025

Hybrid in-memory and disk cache in Rust

Rust 946 43 Updated May 22, 2025

Finetune Qwen3, Llama 4, TTS, DeepSeek-R1 & Gemma 3 LLMs 2x faster with 70% less memory! 🦥

Python 39,448 3,110 Updated May 27, 2025

Fully local web research and report writing assistant

Python 7,470 736 Updated Mar 24, 2025

A Sphinx extension that integrates JupyterLite within your Sphinx documentation

Python 76 25 Updated May 26, 2025

A JupyterLab extension for collaborative 3D geometry modeling

TypeScript 186 21 Updated May 27, 2025

Python tool for converting files and office documents to Markdown.

Python 58,009 2,985 Updated May 23, 2025

Voilà turns Jupyter notebooks into standalone web applications

Python 5,707 516 Updated May 6, 2025

Interactive Canvas in Jupyter

Python 705 63 Updated May 21, 2025

VTK Data visualization extension for JupyterLab

TypeScript 67 8 Updated May 11, 2025

Automagically import single file Python modules from GitHub.

Python 135 8 Updated Apr 6, 2019
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