-
hetionet-analysis Public
Forked from CU-DBMI/hetionet-analysisVarious data analysis performed using Hetionet, a hetnet of biomedical knowledge.
BSD 3-Clause "New" or "Revised" License UpdatedJun 3, 2025 -
playbooks Public
Forked from WayScience/playbooksPlaybooks relevant to the operations of the Way Lab and similar labs.
Creative Commons Zero v1.0 Universal UpdatedJun 3, 2025 -
MOSS Public
Forked from numfocus/MOSSMap of Open Source Science
Python Apache License 2.0 UpdatedJun 2, 2025 -
CP_Parallel Public
Forked from WayScience/CP_ParallelTraditionally, headless mode for CellProfiler can only run with one worker at a time with one set of images, which can take a long time sequentially. CP Parallel will run multiple instances of Cell…
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 2, 2025 -
CellProfiler Public
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
Python Other UpdatedJun 2, 2025 -
duck_goose Public
Experiment with model context protocol (MCP)
BSD 3-Clause "New" or "Revised" License UpdatedJun 2, 2025 -
-
pa11y Public
Forked from pa11y/pa11yPa11y is your automated accessibility testing pal
JavaScript GNU Lesser General Public License v3.0 UpdatedMay 31, 2025 -
CytoTable Public
Forked from cytomining/CytoTableTransform data for processing image-based profiling readouts with Pycytominer.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 30, 2025 -
almanac Public
Forked from software-gardening/almanackAn open-source handbook of applied guidance and tools for sustainable software development and maintenance.
BSD 3-Clause "New" or "Revised" License UpdatedMay 30, 2025 -
pediatric_cancer_atlas_profiling Public
Forked from WayScience/pediatric_cancer_atlas_profilingImage analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedMay 29, 2025 -
coSMicQC Public
Forked from WayScience/coSMicQCcoSMicQC is a software tool for single-cell quality control of morphology datasets.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 28, 2025 -
CytoDataFrame Public
Forked from WayScience/CytoDataFrameAn in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
BSD 3-Clause "New" or "Revised" License UpdatedMay 28, 2025 -
pycytominer Public
Forked from cytomining/pycytominerPython package for processing image-based profiling data
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 27, 2025 -
onesentence Public
A pre-commit check for semantic line breaks.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 27, 2025 -
template-uv-python-research-software Public
Forked from CU-DBMI/template-uv-python-research-softwareA template for Pythonic research software with environment management through uv.
Jinja BSD 3-Clause "New" or "Revised" License UpdatedMay 27, 2025 -
set-website Public
Forked from CU-DBMI/set-websiteWebsite for the software engineering team (SET)
-
nViz Public
Forked from WayScience/nVizA tool for creating and visualizing n-dimensional microscopy images.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 20, 2025 -
parsl Public
Forked from Parsl/parslParsl - a Python parallel scripting library
Python Apache License 2.0 UpdatedMay 19, 2025 -
sqlfluff Public
Forked from sqlfluff/sqlfluffA modular SQL linter and auto-formatter with support for multiple dialects and templated code.
Python MIT License UpdatedMay 17, 2025 -
CytoTable-benchmarks Public
Forked from cytomining/CytoTable-benchmarksBenchmarks for CytoTable and related.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 15, 2025 -
-
scllama Public
Using llama vision models to understand single-cell images for profiling.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 11, 2025 -
wall-of-software Public
Forked from CU-DBMI/wall-of-softwareA list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
JavaScript UpdatedApr 25, 2025 -
demo-uca-isilon-python Public
Forked from WayScience/demo-uca-isilon-pythonDemonstrating capabilities with the University of Colorado Anschutz (UCA) Isilon storage solution using Python.
BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2025 -
forking-behavior Public
Forked from sandbox-test-org/forking-behaviorBSD 3-Clause "New" or "Revised" License UpdatedApr 21, 2025 -
bssw.io Public
Forked from betterscientificsoftware/bssw.ioBetter Scientific Software Homepage
Python Other UpdatedApr 16, 2025 -
dependabot-core Public
Forked from dependabot/dependabot-core🤖 Dependabot's core logic for creating update PRs.
Ruby MIT License UpdatedFeb 20, 2025 -
citation-file-format Public
Forked from citation-file-format/citation-file-formatThe Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
Python Creative Commons Attribution 4.0 International UpdatedFeb 16, 2025 -
Pre-commit hook to check whether your code coverage report is up to date and update it if necessary.
BSD 3-Clause "New" or "Revised" License UpdatedJan 27, 2025
{{ message }}