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@cytomining

cytomining

Cytomining organization logo

Welcome to Cytomining!

Cytomining is a software ecosystem that maintains essential tools, workflows, and best practices for single-cell image-based profiling and microscopy data analysis research.

See the links below to get started!

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  1. DeepProfiler DeepProfiler Public

    Morphological profiling using deep learning

    Python 116 42

  2. pycytominer pycytominer Public

    Python package for processing image-based profiling data

    Python 115 39

  3. cytominer cytominer Public

    Methods for Image-Based Cell Profiling

    R 51 28

  4. cytominer-eval cytominer-eval Public

    [Deprecated] Common Evaluation Metrics for DataFrames

    Python 7 12

  5. profiling-recipe profiling-recipe Public

    Image-based Profiling Recipe

    Python 9 29

  6. CytoTable CytoTable Public

    Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

    Python 10 6

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