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1. CompLife 2005: Konstanz, Germany
- Michael R. Berthold, Robert C. Glen, Kay Diederichs, Oliver Kohlbacher, Ingrid Fischer:
Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings. Lecture Notes in Computer Science 3695, Springer 2005, ISBN 3-540-29104-0
Systems Biology
- Gihan Dawelbait, Christian Pilarsky
, Yanju Zhang, Robert Grützmann, Michael Schroeder:
Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. 1-11 - Eleftherios Panteris, Stephen Swift
Biochemical Pathway Analysis via Signature Mining. 12-23 - Ioannis A. Maraziotis, Andrei Dragomir
Recurrent Neuro-fuzzy Network Models for Reverse Engineering Gene Regulatory Interactions. 24-34
Data Analysis and Integration
- Alexandre Urzhumtsev
Some Applications of Dummy Point Scatterers for Phasing in Macromolecular X-Ray Crystallography. 35-45 - Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes:
BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. 46-56 - Marcus Weber, Susanna Kube
Robust Perron Cluster Analysis for Various Applications in Computational Life Science. 57-66
Structural Biology
- Evgeny B. Krissinel, Kim Henrick:
Multiple Alignment of Protein Structures in Three Dimensions. 67-78 - Constantin Bannert, Jens Stoye
Protein Annotation by Secondary Structure Based Alignments (PASSTA). 79-90 - Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. 91-103
Genomics
- Jeannette M. de Graaf, Renée X. de Menezes, Judith M. Boer, Walter A. Kosters:
Frequent Itemsets for Genomic Profiling. 104-116 - Defeng Wang, Daniel S. Yeung, Eric C. C. Tsang, Lin Shi:
Gene Selection Through Sensitivity Analysis of Support Vector Machines. 117-127 - Robert Brijder
The Breakpoint Graph in Ciliates. 128-139
Computational Proteomics
- Andreas Quandt, Alexander Ploner, Chuen Seng Tan
ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers. 140-150 - Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber
Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. 151-162 - Evgeny B. Krissinel, Kim Henrick:
Detection of Protein Assemblies in Crystals. 163-174
Molecular Informatics
- Andreas Bender, Andreas Klamt
Molecular Similarity Searching Using COSMO Screening Charges (COSMO/3PP). 175-185 - Bernhard Fischer, Holger Merlitz, Wolfgang Wenzel:
Increasing Diversity in In-silico Screening with Target Flexibility. 186-197 - Daniel Baum
Multiple Semi-flexible 3D Superposition of Drug-Sized Molecules. 198-207
Molecular Structure Determination and Simulation
- Polina V. Banushkina, Olaf Schenk, Markus Meuwly:
Efficiency Considerations in Solving Smoluchowski Equations for Rough Potentials. 208-216 - Markus Bauer, Gunnar W. Klau
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. 217-228 - Johannes Schmidt-Ehrenberg, Hans-Christian Hege
Visual Analysis of Molecular Conformations by Means of a Dynamic Density Mixture Model. 229-240
Distributed Data Mining
- Micha Bayer
Distributed BLAST in a Grid Computing Context. 241-252 - Tatjana Eitrich, Bruno Lang:
Parallel Tuning of Support Vector Machine Learning Parameters for Large and Unbalanced Data Sets. 253-264 - Emad Y. Ramadan
The Architecture of a Proteomic Network in the Yeast. 265-276
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