JP5395767B2 - トランスポーター遺伝子oatp−b、c、d、およびe - Google Patents
トランスポーター遺伝子oatp−b、c、d、およびe Download PDFInfo
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- JP5395767B2 JP5395767B2 JP2010197853A JP2010197853A JP5395767B2 JP 5395767 B2 JP5395767 B2 JP 5395767B2 JP 2010197853 A JP2010197853 A JP 2010197853A JP 2010197853 A JP2010197853 A JP 2010197853A JP 5395767 B2 JP5395767 B2 JP 5395767B2
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Description
OATP-B遺伝子 486番目のコドンにおける多型(tct:Ser、あるいはttt:Phe)
OATP-C遺伝子 130番目のコドンにおける多型(aat:Asn、あるいはgat:Asp)
OATP-C遺伝子 174番目のコドンにおける多型(gtg:Val、あるいはgcg:Ala)
1. トランスポーター活性を有するタンパク質をコードする下記(a)から(d)のいずれかに記載のDNA、
(a)配列番号:2、4、6、または8に記載のアミノ酸配列からなるタンパク質をコードするDNA。
(b)配列番号:1、3、5、または7に記載の塩基配列のコード領域を含むDNA。
(c)配列番号:2、4、6、または8に記載のアミノ酸配列において1若しくは複数のアミノ酸が置換、欠失、挿入、および/または付加したアミノ酸配列からなるタンパク質をコードするDNA。
(d)配列番号:1、3、5、または7に記載の塩基配列からなるDNAとハイブリダイズするDNA。
2. 配列番号:2、4、6、または8に記載のアミノ酸配列からなるタンパク質の部分ペプチドをコードするDNA、
3. (1)または(2)に記載のDNAが挿入されたベクター、
4. (1)若しくは(2)に記載のDNAまたは(3)に記載のベクターを保持する形質転換細胞、
5.(1)または(2)に記載のDNAによりコードされるタンパク質またはペプチド、
6. (4)に記載の形質転換細胞を培養し、該細胞またはその培養上清から発現させたタンパク質を回収する工程を含む、(5)に記載のタンパク質またはペプチドの製造方法、
7. (5)に記載のタンパク質に結合する抗体、
8. 配列番号:1、3、5、または7に記載の塩基配列からなるDNAまたはその相補鎖に相補的な少なくとも15ヌクレオチドを含むポリヌクレオチド、
9. (5)に記載のタンパク質により細胞外から細胞内へ輸送される化合物をスクリーニングする方法であって、
(a)(5)に記載のタンパク質を細胞膜上に発現する細胞を提供する工程、
(b)該細胞に対し、標識された披検化合物を接触させる工程、
(c)該細胞内に取り込まれた、標識された披検化合物を検出する工程、および
(d)該細胞内に取り込まれる化合物を選択する工程、を含む方法、
10. (5)に記載のタンパク質のトランスポーター活性を促進または阻害する化合物をスクリーニングする方法であって、
(a)(5)に記載のタンパク質を細胞膜上に発現する細胞を提供する工程、
(b)該細胞に対し、被検化合物および(5)に記載のタンパク質により輸送される標識された有機化合物を接触させる工程、
(c)該細胞内に取り込まれた、標識された有機化合物の量を測定する工程、および
(d)被検化合物非存在下において測定した場合(対照)と比較して、該細胞内に取り込まれる標識された有機化合物の量を増加または減少させる化合物を選択する工程、を含む方法、を提供するものである。
OATP-B遺伝子 486番目のコドンにおける多型(tct:Ser、あるいはttt:Phe)
OATP-C遺伝子 130番目のコドンにおける多型(aat:Asn、あるいはgat:Asp)
OATP-C遺伝子 174番目のコドンにおける多型(gtg:Val、あるいはgcg:Ala)
OATP-B
ヒトOATP-Aと有意な相同性を示すアミノ酸配列をコードし得るESTであるW19504およびAI052501の塩基配列をもとに、それぞれOABE-1プライマー(5' gat aag ctt ctg tgt ggc cca aga aga act gac 3'/配列番号:9)およびOABE-6プライマー(5' gat aag ctt tac tgc tgt ggc tgc tac tct tgg 3'/配列番号:10)を作製した。これらのプライマーを用い、ヒト成体脳polyA+ RNA由来cDNAを鋳型としてPCRを行い、全ORFを含むOATP-B cDNAを増幅した。PCRにより増幅したOATP-B cDNAをプライマーに付加したHind IIIサイトにより切断し、哺乳動物細胞用発現ベクターであるpcDNA3ベクター(Invitrogen社)のHind IIIサイトに組み込んだ。複数のクローンをシークエンシングすることによりPCRエラーの無いクローン(pcDNA3/OATP-B)を選択し、発現実験に用いた。
ヒトOATP-Aと有意な相同性を示すアミノ酸配列をコードし得る以下のESTの塩基配列からそれぞれのプライマーを作製した。
EST H62893;2893-4プライマー(5' aag ctt ccg tca ata aaa cca aca 3'/配列番号:11)および2893-1プライマー(5' ctt ctc ttg ttg gtt tta ttg acg 3'/配列番号:12)
EST R29414;9414-2プライマー(5' tgt aag tta ttc cat tgt ttc cac 3'/配列番号:13)
EST T73863;3863-1プライマー(5' ttg gtg ctt tta ctt atg tct tca 3'/配列番号:14)
これらのプライマーを用い、3つの断片に分けヒトOATP-Cのクローニングを行った。
5'側
OAHC17プライマー(5' gat ggt acc aaa ctg agc atc aac aac aaa aac 3'/配列番号:15)
OAHC18プライマー(5' gat ggt acc cat cga gaa tca gta gga gtt atc 3'/配列番号:16)
3'側
OAHC21プライマー(5' gat ggt acc tac cct ggg atc tct gtt ttc taa 3'/配列番号:17)
OAHC22プライマー(5' gat ggt acc gtt tgg aaa cac aga agc aga agt 3'/配列番号:18)
ヒトOATP-Aと有意な相同性を示すアミノ酸配列をコードし得るEST AA280224から0224-3プライマー(5' cgc cct cgt ggt ttt tga tgt agc 3'/配列番号:19)を作製した。さらに、ヒト第15番染色体 q26.1 領域由来のPACクローン(pDJ430i19)の配列の一部もヒトOATP-Aと有意な相同性を示すアミノ酸配列をコードし得ることを見いだした。この配列からPAC151-2プライマー(5' gcg gtg cct tac tct tct tct ctt 3'/配列番号:20)を作製した。ヒト成体脳由来cDNAを鋳型とし、これらのプライマーを用いたPCRを行ったところ約1.1kbpのcDNA断片が増幅された。これをプローブとし、ヒト成体腎臓由来5'-STRETCH PLUS cDANライブラリー(CLONTECH社)に対しプラークハイブリダイゼーション法によるスクリーニングを行った。得られたポジティブクローンのファージ懸濁液を鋳型とし、上記のプライマー、あるいは明らかになった配列から作製したOATP-D遺伝子特異的なプライマーと、λgt-10ベクターの配列から作製したGT10 S1プライマー(5' ctt ttg agc aag ttc agc ct 3'/配列番号:21)、あるいはGT10 A1プライマー(5' aga ggt ggc tta tga gta ttt ctt 3'/配列番号:22)との組み合わせによるPCRを行い、増幅断片を直接シークエンシングすることにより配列を決定した。さらに、新たに得られた領域を含むDNA断片をプローブとして用いスクリーニングを行うことにより、ファージクローンによりカバーされる領域を延長していき、全ORFの配列を決定した。
ヒトOATP-Aと有意な相同性を示すアミノ酸配列をコードし得るEST AI347130から、7130-1プライマー(5' tgt aca agg tgc tgg gcg tcc tct 3'/配列番号:23)、および7130-4プライマー(5' cga tcg ggt ata aaa cac att cta 3'/配列番号:24)を作製した。ヒト成体肺由来cDNAを鋳型とし、これらのプライマーを用いたPCRを行ったところ約400bpのcDNA断片が増幅された。これをプローブとし、ヒト成体腎臓由来5'-STRETCH PLUS cDANライブラリー(CLONTECH社)に対しプラークハイブリダイゼーション法によるスクリーニングを行った。得られたポジティブクローンのファージ懸濁液を鋳型とし、上記のプライマー、あるいは明らかになった配列から作製したOATP-E遺伝子特異的なプライマーと、λgt-10ベクターの配列から作製したGT10 S1プライマー、あるいはGT10 A1プライマーとの組み合わせによるPCRを行い、増幅断片を直接シークエンシングすることにより配列を決定した。さらに、新たに得られた領域を含むDNA断片をプローブとして用いスクリーニングを行うことにより、ファージクローンによりカバーされる領域を延長していき、全ORFの配列を決定した。
5'側
OAE17プライマー(5' gat aag ctt tgc gtg gct gaa gcc tcg aag tca 3'/配列番号:25)
OAE18プライマー(5' gat gga tcc act ggt gca ttt ccg ccg ctc tca 3'/配列番号:26)
3'側
OAE21プライマー(5' gat aag ctt tct tca ccg ccg ttc cca tcc ttg 3'/配列番号:27)
OAE22プライマー(5' gat gga tcc act gtt ctg tca tca gga aat gct 3'/配列番号:28)
PCRは基本的に以下に示す条件を基本とし、適宜変更を加えて行った。
<反応液組成>
鋳型DNA
10 x ExTaqバッファー (TaKaRa社) 5μl
2.5mM dNTPs (TaKaRa社) 4μl
ExTaq (TaKaRa社) 0.5μl
TaqStartTM Antibody (CLONTECH) 0.5μl
センスプライマー 10〜20pmol
アンチセンスプライマー 10〜20pmol
/全量 50μl
<反応条件>
一般的なPCR
94℃、2分→(94℃、30秒→55℃〜62℃、30秒→72℃、2〜3分) x 25〜40サイクル→72℃、10分
RACE法
94℃、2分→(94℃、30秒→68℃、4分) x 5サイクル→(94℃、30秒→62℃、30秒→72℃、2分) x 30サイクル→72℃、10分
PCRの鋳型として用いるcDNAは、SUPERSCRIPTTM II RNase H- 逆転写酵素(GIBCO BRL社)を用い、メーカー推奨の一般的な方法に従って作製した。すなわち、10μgの全RNA、あるいは2μgのポリA+ RNAと、約1μgのオリゴdTプライマー(GIBCO BRL社)、あるいは約0.5μgのランダムヘキサマープライマー(GIBCO BRL社)を混合し、70℃で10分加温した後氷冷した。これにfirst strand緩衝液(GIBCO BRL社)、終濃度10mMのDTT、終濃度0.5mMのdNTPs(GIBCO BRL社)、および400U〜800UのSUPERSCRIPTTM II RNase H- 逆転写酵素を加え、42℃で1時間保温することによりcDNA合成を行った。次いで70℃で15分間加温し、その一部を鋳型として使用した。
PCRにより増幅したDNA断片、あるいはアガロース電気泳動後のゲルから精製したDNA断片などを、Ready-to Go DNA labelling beads (Pharmacia社)を用いたランダムプライマー法により[α-32P]dCTPでラベルし、プローブとして用いた。ハイブリダイゼーションは、ExpressHyb Hybridization Solution (CLONTECH社)を用い、メーカー推奨の方法に従い、68℃で2時間以上保温することにより行った。ハイブリダイゼーションの後、フィルターを、2 x SSC, 0.1% SDS溶液中、室温で、20分、2回洗浄し、次いで、0.1 X SSC, 0.1% SDS溶液中、50℃で、20分、2回の洗浄を行った。
以下に示すそれぞれの遺伝子に特異的なプライマーを用い、RT-PCR法による各遺伝子発現の組織分布の解析を行った。
OATP-A
OAA-1プライマー(5' aag aag agg tca aga agg aaa aat 3'/配列番号:29)
OAA-2プライマー(5' gga gca tca agg aac agt cag gtc 3'/配列番号:30)
OATP-B
4742-1プライマー(5' cgt gcg gcc aag tgt gtt cca taa 3'/配列番号:31)
4742-2プライマー(5' gaa gga gta gcc cca tag cca atc 3'/配列番号:32)
OATP-C
9414-1プライマー(5' tgt cat tgt cct ttt acc tat tat 3'/配列番号:33)
9414-2プライマー(前出 5' tgt aag tta ttc cat tgt ttc cac 3'/配列番号:13)
OATP-D
0224-2プライマー(5' ctc aaa tcc ttc gcc ttc atc ctg 3'/配列番号:34)
0224-4プライマー(5' agg gtc aga gta gag gca aag aac 3'/配列番号:35)
OATP-E
7130-2プライマー(5' cac ggc ggg cac tca gca ttt cct 3'/配列番号:36)
7130-4プライマー(前出 5' cga tcg ggt ata aaa cac att cta 3'/配列番号:24)
G3PDH
Upstreamプライマー(5' TGAAGGTCGGAGTCAACGGATTTGGT 3'/配列番号:37)
Downstreamプライマー(5' CATGTGGGCCATGAGGTCCACCAC 3'/配列番号:38)
pcDNA3/OATP-C、及びコントロールとしてインサートを含まないpcDNA3ベクター(モック)を、リン酸カルシウム法によりヒト胎児腎臓由来細胞株HEK293細胞に導入した。すなわち、プラスミドDNA10μg、ヘペス緩衝液(137mM NaCl、5mM KCl、0.7mM Na2HPO4、6mMデキストロース、21mMヘペス pH7.1) 1ml、2M CaCl2 62.5μlを混合し、30分以上室温で静置する事によりリン酸カルシウム共沈物を生成させた。10cmプレート1枚あたり1.5 x 106個の細胞を蒔き、24時間培養した後、先のリン酸カルシウム共沈物を加え24時間培養し、その後PBS(Phosphate buffered saline)でプレートを洗浄し、培地を加えさらに24時間培養した。
Claims (8)
- トランスポーター活性を有するタンパク質をコードする下記(a)から(d)のいずれかに記載のDNA。
(a)配列番号:6に記載のアミノ酸配列からなるタンパク質をコードするDNA。
(b)配列番号:5に記載の塩基配列のコード領域を含むDNA。
(c)配列番号:6に記載のアミノ酸配列において10アミノ酸以内のアミノ酸が置換、欠失、挿入、および/または付加したアミノ酸配列からなるタンパク質をコードするDNA。
(d)配列番号:5に記載の塩基配列からなるDNAとハイブリダイズするDNAであって、68℃で30分以上プレハイブリダイゼーションを行い、その後、2×SSC、0.1% SDS中、室温で20分の洗浄を3回、次いで、0.1×SSC、0.1% SDS中、50℃で20分の洗浄を2回行うハイブリダイズ条件でハイブリダイズするDNA。 - 請求項1に記載のDNAが挿入されたベクター。
- 請求項1に記載のDNAまたは請求項2に記載のベクターを保持する形質転換細胞。
- 請求項1に記載のDNAによりコードされるタンパク質。
- 請求項3に記載の形質転換細胞を培養し、該細胞またはその培養上清から発現させたタンパク質を回収する工程を含む、請求項4に記載のタンパク質の製造方法。
- 請求項4に記載のタンパク質に結合する抗体であって、配列番号:6に記載のアミノ酸配列の556〜639位に結合する抗体を除く抗体。
- 請求項4に記載のタンパク質により細胞外から細胞内へ輸送される化合物をスクリーニングする方法であって、
(a)請求項4に記載のタンパク質を細胞膜上に発現する細胞を提供する工程、
(b)該細胞に対し、標識された披検化合物を接触させる工程、
(c)該細胞内に取り込まれた、標識された披検化合物を検出する工程、および
(d)該細胞内に取り込まれる化合物を選択する工程、を含む方法。 - 請求項4に記載のタンパク質のトランスポーター活性を促進または阻害する化合物をスクリーニングする方法であって、
(a)請求項4に記載のタンパク質を細胞膜上に発現する細胞を提供する工程、
(b)該細胞に対し、被検化合物およびエストラジオール-17B-グルクロナイド、エストロン-3-スルフェート、ベンジルペニシリン、およびプロスタグランジンE2からなる群より選択される標識された有機化合物を接触させる工程、
(c)該細胞内に取り込まれた、該標識された有機化合物の量を測定する工程、および
(d)被検化合物非存在下において測定した場合(対照)と比較して、該細胞内に取り込まれる該標識された有機化合物の量を増加または減少させる化合物を選択する工程、を含む方法。
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US20040171010A1 (en) * | 2001-05-24 | 2004-09-02 | Rachael Moore | Methods |
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KR102429794B1 (ko) | 2012-09-11 | 2022-08-08 | 디스커버리 라이프 사이언시즈, 엘엘씨 | 약물 트랜스포터 단백질(들) 및/또는 약물대사 효소(들)를 인코딩하는 유전자(들)를 일시적으로 과발현하는 소모성 냉동보존 세포 |
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US20060121523A1 (en) | 2006-06-08 |
US20100196960A1 (en) | 2010-08-05 |
US20030022199A1 (en) | 2003-01-30 |
ATE431361T1 (de) | 2009-05-15 |
JP4838961B2 (ja) | 2011-12-14 |
EP1486510A1 (en) | 2004-12-15 |
US7045316B2 (en) | 2006-05-16 |
EP1223217A1 (en) | 2002-07-17 |
WO2001021792A1 (fr) | 2001-03-29 |
AU7317400A (en) | 2001-04-24 |
EP2030985A1 (en) | 2009-03-04 |
EP1223217A4 (en) | 2003-06-25 |
JP2011015694A (ja) | 2011-01-27 |
EP1486510B1 (en) | 2009-05-13 |
US8748128B2 (en) | 2014-06-10 |
EP2316848A1 (en) | 2011-05-04 |
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