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DE602005007874D1 - Codierungs- und decodierungsreaktionen zur bestimmung von target-polynukleotiden - Google Patents

Codierungs- und decodierungsreaktionen zur bestimmung von target-polynukleotiden

Info

Publication number
DE602005007874D1
DE602005007874D1 DE602005007874T DE602005007874T DE602005007874D1 DE 602005007874 D1 DE602005007874 D1 DE 602005007874D1 DE 602005007874 T DE602005007874 T DE 602005007874T DE 602005007874 T DE602005007874 T DE 602005007874T DE 602005007874 D1 DE602005007874 D1 DE 602005007874D1
Authority
DE
Germany
Prior art keywords
present
encoding
reaction
decoding
coding
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
DE602005007874T
Other languages
English (en)
Inventor
Kai Qin Lao
Mark T Reed
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Applied Biosystems LLC
Original Assignee
Applera Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Applera Corp filed Critical Applera Corp
Publication of DE602005007874D1 publication Critical patent/DE602005007874D1/de
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
DE602005007874T 2004-03-24 2005-03-24 Codierungs- und decodierungsreaktionen zur bestimmung von target-polynukleotiden Active DE602005007874D1 (de)

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US55615704P 2004-03-24 2004-03-24
US55622404P 2004-03-24 2004-03-24
US55616304P 2004-03-24 2004-03-24
US55616204P 2004-03-24 2004-03-24
US63068104P 2004-11-24 2004-11-24
PCT/US2005/009882 WO2005094532A2 (en) 2004-03-24 2005-03-24 Encoding and decoding reactions for determining target polynucleotides

Publications (1)

Publication Number Publication Date
DE602005007874D1 true DE602005007874D1 (de) 2008-08-14

Family

ID=35064420

Family Applications (2)

Application Number Title Priority Date Filing Date
DE602005014453T Active DE602005014453D1 (de) 2004-03-24 2005-03-24 Ligation und amplifikationsreaktionen zur bestimmung von zielmolekülen
DE602005007874T Active DE602005007874D1 (de) 2004-03-24 2005-03-24 Codierungs- und decodierungsreaktionen zur bestimmung von target-polynukleotiden

Family Applications Before (1)

Application Number Title Priority Date Filing Date
DE602005014453T Active DE602005014453D1 (de) 2004-03-24 2005-03-24 Ligation und amplifikationsreaktionen zur bestimmung von zielmolekülen

Country Status (6)

Country Link
US (2) US7601821B2 (de)
EP (3) EP2161346B1 (de)
JP (2) JP2007530051A (de)
AT (2) ATE399884T1 (de)
DE (2) DE602005014453D1 (de)
WO (2) WO2005094532A2 (de)

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WO2006076017A2 (en) * 2004-04-30 2006-07-20 Applera Corporation Methods and kits for identifying target nucleotides in mixed populations
US7364855B2 (en) * 2004-04-30 2008-04-29 Applera Corporation Methods and kits for methylation detection
US7575863B2 (en) * 2004-05-28 2009-08-18 Applied Biosystems, Llc Methods, compositions, and kits comprising linker probes for quantifying polynucleotides
US20060019288A1 (en) * 2004-06-30 2006-01-26 Applera Corporation Methods, reaction mixtures, and kits for ligating polynucleotides
US7642055B2 (en) * 2004-09-21 2010-01-05 Applied Biosystems, Llc Two-color real-time/end-point quantitation of microRNAs (miRNAs)
CN101351542A (zh) * 2005-07-15 2009-01-21 阿普尔拉公司 液体加工装置和方法
WO2007011903A2 (en) 2005-07-15 2007-01-25 Applera Corporation Analyzing messenger rna and micro rna in the same reaction mixture
WO2007024800A2 (en) * 2005-08-22 2007-03-01 Applera Corporation Device and method for making discrete volumes of a first fluid in contact with a second fluid, which are immiscible with each other
EP1924713B1 (de) * 2005-08-24 2011-11-09 Life Technologies Corporation Verfahren zur quantifizierung von sirnas, mirnas und polymorphen mirnas
JP2009536525A (ja) * 2006-05-10 2009-10-15 ディクステリティー ダイアグノーティクス 化学反応性オリゴヌクレオチドプローブを使用した核酸標的の検出
US8597938B2 (en) * 2007-10-12 2013-12-03 Qiagen Sciences Llc System for providing control reactions for real time RT-PCR
WO2009100449A1 (en) * 2008-02-08 2009-08-13 Fluidigm Corporation Dynamic array assay methods
WO2010027870A2 (en) * 2008-08-26 2010-03-11 Fluidigm Corporation Assay methods for increased throughput of samples and/or targets
EP3216874A1 (de) 2008-09-05 2017-09-13 TOMA Biosciences, Inc. Verfahren zum stratifizieren und annotieren der behandlungsoptionen eines krebsmedikaments
JP5608998B2 (ja) * 2009-03-31 2014-10-22 東洋紡株式会社 保存安定性に優れた核酸増幅検出試薬キット
EP2414544B1 (de) * 2009-04-01 2014-04-23 DXTerity Diagnostics Incorporated Chemische ligationsabhängige sondenamplifizierung (clpa)
CN103952482A (zh) * 2009-04-02 2014-07-30 弗卢伊蒂格姆公司 用于对目标核酸进行条形码化的多引物扩增方法
EP2464755B1 (de) 2009-11-05 2016-03-09 Epicentre Technologies Corporation Verfahren und kits zur 3'-enden-markierung von rna
CN102648295B (zh) * 2009-12-07 2017-08-08 伊鲁米那股份有限公司 用于多重基因分型的多样品索引
WO2011100057A2 (en) * 2010-02-09 2011-08-18 Eugene Spier Methods and compositions for universal detection of nucleic acids
EP3572528A1 (de) 2010-09-24 2019-11-27 The Board of Trustees of the Leland Stanford Junior University Direkte erfassung, amplifikation und sequenzierung einer ziel-dna unter verwendung immobilisierter primer
WO2012054933A2 (en) * 2010-10-22 2012-04-26 Fluidigm Corporation Universal probe assay methods
US20120288857A1 (en) * 2011-02-03 2012-11-15 Fluidigm Corporation Multifunctional probe-primers
WO2012142003A2 (en) 2011-04-15 2012-10-18 Life Technologies Corporation Chemical ligation
CN108342453A (zh) 2011-05-09 2018-07-31 富鲁达公司 基于探针的核酸检测
US9745616B2 (en) 2011-05-17 2017-08-29 Dxterity Diagnostics Incorporated Methods and compositions for detecting target nucleic acids
CN112592960B (zh) 2011-05-20 2024-08-27 富鲁达公司 核酸编码反应
US20140242587A1 (en) * 2011-10-03 2014-08-28 University Of Florida Research Foundation, Inc. Rapid and Reliable Detection of Infectious Agents
CN104487097B (zh) 2011-12-30 2019-01-18 华盛顿大学商业中心 具有窄带发射的发色聚合物点
WO2013106807A1 (en) 2012-01-13 2013-07-18 Curry John D Scalable characterization of nucleic acids by parallel sequencing
EP4361609A3 (de) 2012-02-03 2024-07-17 California Institute of Technology Signalkodierung und -dekodierung in multiplexierten biochemischen assays
SG11201404899VA (en) 2012-02-14 2014-10-30 Univ Cornell Method for relative quantification of nucleic acid sequence, expression, or copy changes, using combined nuclease, ligation, and polymerase reactions
JP2015519900A (ja) 2012-05-21 2015-07-16 フリューダイム・コーポレイション 粒子集団の単粒子解析方法及び単粒子単離方法
EP3901243A1 (de) 2012-08-03 2021-10-27 California Institute of Technology Multiplexing und quantifizierung in pcr mit reduzierter hardware und reduzierten anforderungen
EP2971172B1 (de) 2013-03-14 2019-07-24 Cornell University Verfahren zur relativen quantifizierung von veränderungen in einer dna-methylierung mit kombinierten nuklease-, ligations- und polymerasereaktionen
WO2015153571A2 (en) 2014-04-01 2015-10-08 Cornell University Detection of dna methylation using combined nuclease ligation reactions
EP3154696B1 (de) 2014-06-10 2020-04-08 DxTerity Diagnostics Incorporated Vorrichtungen und verfahren zur entnahme und stabilisierung biologischer proben
CN107002145B (zh) 2014-10-08 2021-07-30 康奈尔大学 一种用于鉴定样品中的含有靶核苷酸序列的一个或多个核酸分子的方法
WO2017044993A2 (en) * 2015-09-08 2017-03-16 Affymetrix, Inc. Nucleic acid analysis by joining barcoded polynucleotide probes
US11118216B2 (en) 2015-09-08 2021-09-14 Affymetrix, Inc. Nucleic acid analysis by joining barcoded polynucleotide probes
US11117113B2 (en) 2015-12-16 2021-09-14 Fluidigm Corporation High-level multiplex amplification
WO2017218777A1 (en) 2016-06-17 2017-12-21 California Institute Of Technology Nucleic acid reactions and related methods and compositions

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US5494810A (en) 1990-05-03 1996-02-27 Cornell Research Foundation, Inc. Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease
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US6331393B1 (en) 1999-05-14 2001-12-18 University Of Southern California Process for high-throughput DNA methylation analysis
EP1257664A4 (de) 2000-01-28 2006-04-05 Althea Technologies Inc Verfahren zur analyse der genexpression
CA2410950A1 (en) * 2000-05-30 2001-12-06 Hans-Michael Wenz Methods for detecting target nucleic acids using coupled ligation and amplification
US6620586B2 (en) 2001-02-20 2003-09-16 Applied Gene Technologies, Inc. Methods and compositions for analyzing nucleic acids
US20030119004A1 (en) * 2001-12-05 2003-06-26 Wenz H. Michael Methods for quantitating nucleic acids using coupled ligation and amplification
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WO2003060163A2 (en) * 2001-12-28 2003-07-24 Keygene N.V. Discrimination and detection of target nucleotide sequences using mass spectrometry
US6960436B2 (en) * 2002-02-06 2005-11-01 Epigenomics Ag Quantitative methylation detection in DNA samples
US7176002B2 (en) * 2002-05-16 2007-02-13 Applera Corporation Universal-tagged oligonucleotide primers and methods of use
US7153658B2 (en) 2002-09-19 2006-12-26 Applera Corporation Methods and compositions for detecting targets
JP2006500033A (ja) 2002-09-19 2006-01-05 アプレラ コーポレイション 標的を検出するための方法および組成物
US20040235005A1 (en) 2002-10-23 2004-11-25 Ernest Friedlander Methods and composition for detecting targets
US20040110134A1 (en) 2002-12-05 2004-06-10 Wenz H. Michael Methods for quantitating nucleic acids using coupled ligation and amplification
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WO2005094532A2 (en) 2004-03-24 2005-10-13 Applera Corporation Encoding and decoding reactions for determining target polynucleotides

Also Published As

Publication number Publication date
EP1727913B1 (de) 2009-05-13
WO2005098040A3 (en) 2006-03-23
EP2161346B1 (de) 2013-06-19
ATE431433T1 (de) 2009-05-15
EP1727913B8 (de) 2009-08-19
JP2007530051A (ja) 2007-11-01
WO2005094532A3 (en) 2005-12-22
WO2005098040A2 (en) 2005-10-20
EP1730312A2 (de) 2006-12-13
WO2005094532A2 (en) 2005-10-13
US7604937B2 (en) 2009-10-20
WO2005098040A8 (en) 2005-12-01
US7601821B2 (en) 2009-10-13
EP2161346A1 (de) 2010-03-10
JP2007530048A (ja) 2007-11-01
EP1727913A2 (de) 2006-12-06
US20050260640A1 (en) 2005-11-24
EP1730312B1 (de) 2008-07-02
DE602005014453D1 (de) 2009-06-25
ATE399884T1 (de) 2008-07-15
US20050272071A1 (en) 2005-12-08

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Legal Events

Date Code Title Description
8364 No opposition during term of opposition
8327 Change in the person/name/address of the patent owner

Owner name: APPLIED BIOSYSTEMS, LLC (N. D. GES. D. STAATES, US

8380 Miscellaneous part iii

Free format text: PFANDRECHT

8380 Miscellaneous part iii

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