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CN116041370A - Staurosporine compound and preparation method and application thereof - Google Patents

Staurosporine compound and preparation method and application thereof Download PDF

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CN116041370A
CN116041370A CN202310019142.1A CN202310019142A CN116041370A CN 116041370 A CN116041370 A CN 116041370A CN 202310019142 A CN202310019142 A CN 202310019142A CN 116041370 A CN116041370 A CN 116041370A
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staurosporine
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volume ratio
elution
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丁立建
冯方检
何山
杨冠军
励文豪
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Ningbo University
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    • C07ORGANIC CHEMISTRY
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    • C07D498/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D498/22Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains four or more hetero rings
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    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/18Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
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Abstract

The invention discloses a staurosporine compound and a preparation method and application thereof, which are characterized in that the structural formula of the compound is shown as I, the preparation method comprises the steps of fermenting and culturing actinomycetes with the preservation number of CCTCC No. M2020953 to obtain a fermentation product of the staurosporine compound, soaking and extracting the fermentation product with ethyl acetate to obtain a crude extract, and separating and purifying the crude extract by normal phase silica gel column chromatography, reverse medium pressure column chromatography and reverse phase semi-preparation high performance liquid chromatography on the basis of the crude extract.

Description

Staurosporine compound and preparation method and application thereof
Technical Field
The invention relates to staurosporine compounds, in particular to staurosporine compounds extracted from marine actinomycetes, and a preparation method and application thereof.
Background
Staurosporine antibiotics are a group of natural products consisting of six-membered chain amine compounds with indolocarbazole as a core. It was originally isolated from Streptomyces soil by Japanese Korea and his colleagues in 1977, and consistent with its high structural specificity, stellate sporins have a broad spectrum of biological activities including anti-tumor, antiviral, insecticidal, antibacterial and anticancer. Staurosporine compounds have attracted attention from chemical or biological synthesis researchers due to their remarkable activity and diverse structures.
The present inventors have found that for marine actinomycetesSteptomyces sp.4-7 in the chemical investigation of ethyl acetate extracts under fermentation in medium A, a new natural product of the staurosporine type was found. At present, the chemical structure of the compound and the activity of the drug-resistant breast cancer cell strain are not reported, so that the related drugs are not yet available in the market.
Disclosure of Invention
The invention aims to solve the technical problem of providing a novel staurosporine compound with an inhibiting effect on drug-resistant breast cancer cell strains, and a preparation method and application thereof.
The technical scheme adopted for solving the technical problems is as follows:
1. a staurosporine compound, the structural formula of which is shown as (I):
Figure DEST_PATH_IMAGE001
(I)。
2. a preparation method of staurosporine compounds comprises the following steps:
(1) Fermentation production
The preservation number is CCTCC NO: m2020953 Marine actinomycetesSteptomyces sp, 4-7) streaking on a flat plate of a solid culture medium of Gaoshi No. 1, culturing and activating the solid culture medium in an incubator at 28 ℃ for 7 days, picking single bacterial colonies, inoculating the single bacterial colonies in a liquid culture medium of Gaoshi No. 1, culturing and sterilizing the single bacterial colonies on a shaking table at the temperature of 28 ℃ and the rotating speed of 180 rpm/min, collecting seed liquid after culturing for 3 days, inoculating the seed liquid into a culture medium A according to the inoculum size of 10% by volume, and culturing the seed liquid at the temperature of 28 ℃ for 11 days to obtain a fermentation product;
(2) Extraction of extractum
Adding equal amount of ethyl acetate into the fermented product obtained in the step (1), repeatedly extracting for 3 times, and then evaporating ethyl acetate leaching liquor under reduced pressure to obtain crude extract;
(3) Separation and preparation of compounds
The volume ratio of the crude extract obtained in the step (2) is 1:1, after dissolving a dichloromethane and methanol mixed solvent, adding 200-300 meshes of silica gel, mixing, performing positive phase column chromatography, performing gradient elution by using petroleum ether-ethyl acetate solution with volume ratio of (100:1) - (0:1) as an eluent, collecting elution fractions, arranging according to the polarity of the fractions from small to large, and combining to obtain 11 components; performing reverse phase pressure column chromatography gradient elution on the 10 th component, adopting acetonitrile-water with the volume ratio of 30-100% as an eluent, collecting elution fractions, arranging the elution fractions according to the polarity of the fractions from large to small, and combining to obtain 10 components; separating and purifying the 7 th component by semi-preparative reverse phase high performance liquid chromatography, and mixing acetonitrile and water at a volume ratio of 43:57 to obtain a compound with a structure shown as (I)
Figure 641838DEST_PATH_IMAGE001
(I)。
Further, the preparation method of the A culture medium in the step (1) comprises the following steps: weighing 20 g soluble starch, 6 g peptone, 2 gYeast extract, 30 g sea salt, 100 mg KBr,40 mg Fe 2 (SO 4 ) 3 ·4H 2 O and 1 g CaCO 3 Adding into 1000 mL distilled water, and autoclaving at 121deg.C for 20 min.
Further, the elution gradient volume ratio of the petroleum ether-ethyl acetate solution in the step (3) is sequentially 100:1, 50:1, 20:1, 10:1, 5:1, 2:1, 1:1 and 0:1.
And (3) performing gradient elution on the reversed-phase medium-pressure column by using acetonitrile with the volume ratio of 30-100% for 150 min.
Further, the flow rate of the compound separation preparation of the semi-preparative reverse phase high performance liquid chromatography described in the step (3) was 2.0 mL/min.
3. The application of the staurosporine compound in preparing drug-resistant breast cancer cell line inhibitors.
Compared with the prior art, the invention has the advantages that: the invention relates to a staurosporine compound and a preparation method and application thereof, which are characterized in that fermentation products of staurosporine are obtained through microbial fermentation culture, then the fermentation products are soaked and extracted by ethyl acetate to obtain crude extract, and the crude extract is separated and purified by medium-pressure forward silica gel column chromatography, medium-pressure reverse column chromatography and reversed-phase semi-preparation high-efficiency liquid chromatography. Biological activity evaluation shows that the compound 1 has effective inhibition effect on drug-resistant and drug-resistant breast cancer cell lines and IC 50 A value of 4.47μM。
The marine actinomycetes are preparedSteptomyces sp. 4-7), the preservation number is CCTCC NO: m2020953, deposited with the China center for type culture Collection, with a deposition address of university of Wuhan, china, 12 months, 21 days of 2020.
Drawings
FIG. 1 is a nuclear magnetic resonance hydrogen spectrum of a compound of the present invention;
FIG. 2 is a nuclear magnetic resonance carbon spectrum of a compound of the present invention
FIG. 3 is a nuclear magnetic resonance DEPT-135 spectrum of a compound of the present invention;
FIG. 4 is a nuclear magnetic resonance COSY spectrum of a compound of the present invention;
FIG. 5 is a nuclear magnetic resonance HSQC spectrum of a compound of the present invention;
FIG. 6 is a nuclear magnetic resonance HMBC spectra of a compound of the present invention;
FIG. 7 is a nuclear magnetic resonance NOESY spectrum of a compound of the present invention;
FIG. 8 is a mass spectrum of a compound of the present invention;
FIG. 9 is a CD spectrum of a compound of the invention;
FIG. 10 is a CD spectrum of the known compound staurosporine M1.
Detailed Description
The invention is described in further detail below with reference to the embodiments of the drawings.
Example 1
The structural formula of the staurosporine compound is shown as (I):
Figure DEST_PATH_IMAGE002
(I)。
example 2
A preparation method of staurosporine compounds comprises the following steps:
(1) Fermentation production
The preservation number is CCTCC NO: m2020953 Marine actinomycetesSteptomyces sp.4-7) streaking on a plate of a solid culture medium of Gaoshi No. 1, culturing and activating the plate in an incubator at 28 ℃ for 7 days, picking single bacterial colonies, inoculating the single bacterial colonies into a liquid culture medium of Gaoshi No. 1, culturing and sterilizing the single bacterial colonies on a shaking table at the temperature of 28 ℃ and the rotating speed of 180 rpm/min, collecting seed liquid after culturing for 3 days, inoculating the seed liquid into a culture medium A according to the inoculum size with the volume ratio of 10%, and culturing the seed liquid at the temperature of 28 ℃ for 11 days to obtain a ferment; the preparation method of the culture medium A comprises the following steps: weighing 20 g soluble starch, 6 g peptone, 2 g yeast extract, 30 g sea salt, 100 mg KBr,40 mg Fe 2 (SO 4 ) 3 ·4H 2 O and 1 g CaCO 3 Adding into 1000 mL distilled water, and autoclaving at 121deg.C for 20 min;
(2) Extraction of extractum
Adding equal amount of ethyl acetate into the fermented product obtained in the step (1), repeatedly extracting for 3 times, and then evaporating ethyl acetate leaching liquor under reduced pressure to obtain crude extract;
(3) Separation and preparation of compounds
The volume ratio of the crude extract obtained in the step (2) is 1:1, after dissolving a dichloromethane and methanol mixed solvent, adding 200-300 meshes of silica gel, mixing, performing positive phase column chromatography, performing gradient elution by using petroleum ether-ethyl acetate solution with volume ratio of (100:1) - (0:1) as an eluent, collecting elution fractions, arranging according to the polarity of the fractions from small to large, and combining to obtain 11 components; performing reverse phase pressure column chromatography gradient elution on the 10 th component, adopting acetonitrile-water with the volume ratio of 30-100% as an eluent, eluting for 150 min, collecting elution fractions, arranging the fractions according to the polarity from large to small, and combining to obtain 10 components; separating and purifying the 7 th component by semi-preparative reverse phase high performance liquid chromatography, taking acetonitrile and water mixed solution as mobile phase according to the volume ratio of 43:57, wherein the flow rate is 2.0 mL/min, obtaining the compound, the structure is shown as (I), the elution gradient volume ratio of the petroleum ether-ethyl acetate solution is sequentially 100:1, 50:1, 20:1, 10:1, 5:1, 2:1, 1:1 and 0:1,
Figure 496923DEST_PATH_IMAGE002
(I)。
example 3
Structure identification and nuclear magnetic signal attribution of compound
The compound is yellow powder, and high resolution mass spectrum (HR-ESI-MS) in positive ion mode gives its excimer ion peak M/z 525.2139 [ M+H ]] + Is combined with 13 C NMR spectrum to confirm its molecular formula as C 30 H 29 N 4 O 5 . The compound is 1 H and 13 the C NMR data are shown in FIGS. 1 to 7 and Table 1.
TABLE 1D NMR data for Compound 1 (DMSO-d 6 )
Figure DEST_PATH_IMAGE003
Note 1: s-Shan Chongfeng, d-doublet, t-triplet, q-quartet and m-multiplet;
and (2) injection: 1 h was obtained at 600 MHz NMR; 13 c was obtained by NMR at 150 MHz.
FIGS. 3-7 show the major two-dimensional correlation of the compounds of the present invention, from FIG. 3, the compounds contain 30 carbons, 13 quaternary carbons, 4 methyl carbons, 2 methylene carbons, 11 methine carbons, from FIG. 4, the compounds H-8/H-9/H-10/H-11, H-1/H-2/H-3/H-4 are correlated with the presence of COSY, from FIG. 5, the compounds hydrocarbon are directly correlated, from FIG. 6, the compounds hydrocarbon are remotely correlated, and the carbons can be linked together; FIG. 7 is a NOE-related, H of a compound of the present invention 3 There is a NOESY correlation between 2 'and H-4', indicating that they are on the same side of the glycosyl. Coupling constant [ ] 3 J H-3′H-4′ =4.27 Hz) indicates that H-3 'and H-4' are in the same orientation. FIG. 8 is a mass spectrum of a compound of the present invention showing that the molecular weight of the compound of the present invention is 525.2139 and the molecular formula is C 30 H 29 N 4 O 5 FIGS. 9 and 10 are, respectively, the CD spectra of the compound of the invention and the CD spectra of the known compound staurosporine M1; from this, it was found that the CD spectrum of Compound 1 was almost identical to that of staurosporine M1. The absolute configuration of compound 1 was shown to be consistent with staurosporine M1, ascribed to 2's,3' r,4'r,6' r.
Example 4
Activity of staurosporine compounds
Staurosporine compound Activity and application as described in example 1
(1) Experimental sample
Preparing a tested sample solution: the test sample is the pure product of the compound 1 separated and purified in the example 1, a proper amount of the sample is precisely weighed, and a solution with the required concentration is prepared by using DMSO for testing the anti-tumor activity. The tumor cells used in the experiment are drug-resistant breast cancer cell lines;
(2) Experimental method
Drug resistant breast cancer cells were seeded in 96-well plates, attached overnight, and treated with compound 1 at the indicated concentrations for 72h. Cell viability was determined using a cell counting kit. Absorbance was then measured at a wavelength of 450 nm on a miniature flat panel reader;
(3) Experimental results
In the antitumor test, compound 1 was found to be at 4.47μHas obvious cytotoxicity to drug-resistant breast cancer cell lines at the time of M. IC of Compound 1, which exhibits stronger anticancer activity in drug-resistant and parent cells than in the absence of methyl group at the imide group at the 4' position 50 = 4.47 μM。
The above description is not intended to limit the invention, nor is the invention limited to the examples described above. Variations, modifications, additions, or substitutions will occur to those skilled in the art and are therefore within the spirit and scope of the invention.

Claims (7)

1. The staurosporine compound is characterized in that the structural formula of the staurosporine compound is shown as (I):
Figure 342737DEST_PATH_IMAGE001
(I)。
2. a process for the preparation of staurosporine-like compounds according to claim 1, characterized by the steps of:
(1) Fermentation production
The preservation number is CCTCC NO: m2020953 Marine actinomycetesSteptomycessp. 4-7) streaking on a plate of a solid culture medium of Gaoshi No. 1, culturing and activating the plate in an incubator at 28 ℃ for 7 days, picking single bacterial colonies, inoculating the single bacterial colonies into a liquid culture medium of Gaoshi No. 1, culturing and sterilizing the single bacterial colonies on a shaking table at the temperature of 28 ℃ and the rotating speed of 180 rpm/min, collecting seed liquid after culturing for 3 days, inoculating the seed liquid into a culture medium A according to the inoculum size with the volume ratio of 10%, and culturing the seed liquid at the temperature of 28 ℃ for 11 days to obtain a ferment;
(2) Extraction of extractum
Adding equal amount of ethyl acetate into the fermented product obtained in the step (1), repeatedly extracting for 3 times, and then evaporating ethyl acetate leaching liquor under reduced pressure to obtain crude extract;
(3) Separation and preparation of compounds
The volume ratio of the crude extract obtained in the step (2) is 1:1, after dissolving a dichloromethane and methanol mixed solvent, adding 200-300 meshes of silica gel, mixing, performing positive phase column chromatography, performing gradient elution by using petroleum ether-ethyl acetate solution with volume ratio of (100:1) - (0:1) as an eluent, collecting elution fractions, arranging according to the polarity of the fractions from small to large, and combining to obtain 11 components; performing reverse phase pressure column chromatography gradient elution on the 10 th component, adopting acetonitrile-water with the volume ratio of 30-100% as an eluent, collecting elution fractions, arranging the elution fractions according to the polarity of the fractions from large to small, and combining to obtain 10 components; separating and purifying the 7 th component by semi-preparative reverse phase high performance liquid chromatography, and mixing acetonitrile and water at a volume ratio of 43:57 to obtain a compound with a structure shown as (I)
Figure 772581DEST_PATH_IMAGE001
(I)。
3. The method for preparing staurosporine compound according to claim 2, wherein the preparation method of the medium a in the step (1) is as follows: weighing 20 g soluble starch, 6 g peptone, 2 g yeast extract, 30 g sea salt, 100 mg KBr,40 mg Fe 2 (SO 4 ) 3 ·4H 2 O and 1 g CaCO 3 Adding into 1000 mL distilled water, and autoclaving at 121deg.C for 20 min.
4. The method for preparing staurosporine compound according to claim 2, wherein: the elution gradient volume ratio of the petroleum ether-ethyl acetate solution in the step (3) is sequentially 100:1, 50:1, 20:1, 10:1, 5:1, 2:1, 1:1 and 0:1.
5. The method for preparing staurosporine compound according to claim 2, wherein: and (3) performing gradient elution on the reversed-phase medium-pressure column by using acetonitrile with the volume ratio of 30-100% and the elution time of 150 min.
6. The method for preparing staurosporine compound according to claim 2, wherein: the flow rate of the compound separation preparation of the semi-preparation reversed-phase high performance liquid chromatography in the step (3) is 2.0 mL/min.
7. Use of a staurosporine compound of claim 1 for the preparation of a drug resistant breast cancer cell line inhibitor.
CN202310019142.1A 2023-01-06 2023-01-06 Staurosporine compound and preparation method and application thereof Pending CN116041370A (en)

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Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5093330A (en) * 1987-06-15 1992-03-03 Ciba-Geigy Corporation Staurosporine derivatives substituted at methylamino nitrogen
WO2017181149A1 (en) * 2016-04-15 2017-10-19 Blaze Bioscience, Inc. Methods of treating breast cancer
WO2020261293A1 (en) * 2019-06-24 2020-12-30 Dr. Reddy's Laboratories Limited Process for preparation of midostaurin
CN114437109A (en) * 2022-03-08 2022-05-06 贵州省中国科学院天然产物化学重点实验室(贵州医科大学天然产物化学重点实验室) Halogenated derivative of staurosporine, preparation method and application thereof

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5093330A (en) * 1987-06-15 1992-03-03 Ciba-Geigy Corporation Staurosporine derivatives substituted at methylamino nitrogen
WO2017181149A1 (en) * 2016-04-15 2017-10-19 Blaze Bioscience, Inc. Methods of treating breast cancer
WO2020261293A1 (en) * 2019-06-24 2020-12-30 Dr. Reddy's Laboratories Limited Process for preparation of midostaurin
CN114437109A (en) * 2022-03-08 2022-05-06 贵州省中国科学院天然产物化学重点实验室(贵州医科大学天然产物化学重点实验室) Halogenated derivative of staurosporine, preparation method and application thereof

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