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Bakr et al., 2013 - Google Patents

DNA lossless compression algorithms

Bakr et al., 2013

View PDF
Document ID
17357096713422970045
Author
Bakr N
Sharawi A
et al.
Publication year
Publication venue
American Journal of Bioinformatics Research

External Links

Snippet

Modern DNA sequencing instruments are able to generate huge amounts of genomic data. Those huge volumes of data require effective storage, fast transmission, provision of quick access to any record, and superior functionality. Data storage costs have an appreciable …
Continue reading at www.researchgate.net (PDF) (other versions)

Classifications

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    • H03M7/00—Conversion of a code where information is represented by a given sequence or number of digits to a code where the same information or similar information or a subset of information is represented by a different sequence or number of digits
    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/40—Conversion to or from variable length codes, e.g. Shannon-Fano code, Huffman code, Morse code
    • H03M7/42—Conversion to or from variable length codes, e.g. Shannon-Fano code, Huffman code, Morse code using table look-up for the coding or decoding process, e.g. using read-only memory
    • H—ELECTRICITY
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    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/40—Conversion to or from variable length codes, e.g. Shannon-Fano code, Huffman code, Morse code
    • H03M7/4006—Conversion to or from arithmetic code
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    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
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    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
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    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/3084—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction using adaptive string matching, e.g. the Lempel-Ziv method
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    • H03M7/02—Conversion to or from weighted codes, i.e. the weight given to a digit depending on the position of the digit within the block or code word

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