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Fomin, 2011 - Google Patents

Consideration of data load time on modern processors for the Verlet table and linked‐cell algorithms

Fomin, 2011

Document ID
16816384859077213474
Author
Fomin E
Publication year
Publication venue
Journal of Computational Chemistry

External Links

Snippet

Neighbor search algorithms are widely used in molecular dynamics for the direct computation of short‐range pairwise interatomic potentials. These algorithms are based on the Verlet table (VT) and linked‐cell (LC) methods. It is widely believed that the VT is more …
Continue reading at onlinelibrary.wiley.com (other versions)

Classifications

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    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/30—Information retrieval; Database structures therefor; File system structures therefor
    • G06F17/30286—Information retrieval; Database structures therefor; File system structures therefor in structured data stores
    • G06F17/30312—Storage and indexing structures; Management thereof
    • G06F17/30321—Indexing structures
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F9/00—Arrangements for programme control, e.g. control unit
    • G06F9/06—Arrangements for programme control, e.g. control unit using stored programme, i.e. using internal store of processing equipment to receive and retain programme
    • G06F9/30—Arrangements for executing machine-instructions, e.g. instruction decode
    • G06F9/30003—Arrangements for executing specific machine instructions
    • G06F9/30076—Arrangements for executing specific machine instructions to perform miscellaneous control operations, e.g. NOP
    • G06F9/30087—Synchronisation or serialisation instructions
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
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    • G06F9/00—Arrangements for programme control, e.g. control unit
    • G06F9/06—Arrangements for programme control, e.g. control unit using stored programme, i.e. using internal store of processing equipment to receive and retain programme
    • G06F9/46—Multiprogramming arrangements
    • G06F9/52—Programme synchronisation; Mutual exclusion, e.g. by means of semaphores; Contention for resources among tasks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
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    • G06F17/30386—Retrieval requests
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/30—Information retrieval; Database structures therefor; File system structures therefor
    • G06F17/30286—Information retrieval; Database structures therefor; File system structures therefor in structured data stores
    • G06F17/30575—Replication, distribution or synchronisation of data between databases or within a distributed database; Distributed database system architectures therefor
    • G—PHYSICS
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    • G06F12/08—Addressing or allocation; Relocation in hierarchically structured memory systems, e.g. virtual memory systems
    • G06F12/0802—Addressing of a memory level in which the access to the desired data or data block requires associative addressing means, e.g. caches
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
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    • G06F11/00—Error detection; Error correction; Monitoring
    • G06F11/07—Error detection; Error correction; Monitoring responding to the occurence of a fault, e.g. fault tolerance
    • G—PHYSICS
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