The consensus GEM for Saccharomyces cerevisiae
Saccharomyces Genome Database (SGD) REST API wrapper
The metabolic twin model of yeast
Saccharomyces cerevisiae information, gene calling and ORF identification assistant
Comprehensive pan-genome analysis pipeline for Saccharomyces cerevisiae that integrates synteny block detection with functional annotation. Identifies core/accessory genes and conserved genomic regions across diverse yeast strains with visualization tools.
Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Importance of yeast chassis linked to process conditions. Bioresource Technology, 227, 24–34.
GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 | http://doi.org/10.1093/bioinformatics/bty052 |
A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033
Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae
A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
DNA Replication Profiling from CGS data.
In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.
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