Sequence-to-graph mapper and graph generator
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May 22, 2024 - C
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pan-genome
Here are 17 public repositories matching this topic...
Pan-genome wide association studies
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May 29, 2024 - Python
Pan-genomic sequence analysis
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Jul 11, 2022 - HTML
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
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May 24, 2021 - Perl
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
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Apr 16, 2020 - C++
OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
lightweight bioinformatics genomics jupyter-notebook large-scale single-linkage-clustering large-dataset pan-genome core-genome dereplication pre-compiled reciprocal-blast-hits microbe-subspecies independent-of-mysql cpp-callable-binary convenient-installation
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Mar 19, 2025 - Jupyter Notebook
Rules to run Roary or PanPhlAn to build pangenome using Snakemake
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Mar 9, 2018 - HTML
Reference-free FASTQ filter for rare germline and somatic variants
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Aug 3, 2023 - C++
Pangea: The Pan-Genome Analysis Pipeline
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Nov 26, 2020 - Perl
Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness
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Aug 21, 2022 - R
panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.
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Feb 28, 2019 - C++
戊糖乳杆菌泛基因组分析 | Pan-genome analysis of Lactobacillus Pentosus
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Mar 4, 2022 - Python
Pangenomic Statistical analysis in R (pasaR)
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Feb 27, 2018 - R
The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?
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Jul 18, 2023 - Python
Building Pan-Genomes based on Sequence Homology (BPG-SH) constructs and analyzes pan-genomes from multiple organisms. By leveraging sequence homology, BPG-SH integrates genomes to form a comprehensive pan-genome, enhancing our understanding of genetic diversity and evolution.
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May 12, 2023
probability emitting pangenome graphs
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Aug 2, 2019 - Go
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