Nazzari, et al. (2023) 'Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq'

A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.

Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc

RNA-seq workflow: gene-level exploratory analysis and differential expression.

Transcriptional and epigenetic signature of muscle tissue cells linked to atrophy

HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'

Bioinformatic scripts for working on the UiO Abel compute cluster

R scripts for human and marine data analysis

repo of my codes written during my internship at Gebze Technical University and other internship-related stuff

Snakemake pipeline to validate exfi's performance

TCM: visualizes trajectories and cell populations from single cell data

Refining and extending mRNA3' ends

Generate the signature subway and stream plots

Step one of the STREAM ssRNA-Seq Trajectory pipeline

An optimal experimental design framework for accelerating knowledge discovery using gene expression data

Example of how to apply machine learning (ML) approaches in building a predictive model. RNA-seq data set used to train and evaluate the performance of different ML models.

Analysis of RNA binding by S. cerevisiae Ssd1, mostly CRAC sequencing data, August 2020 through June 2021

Code to reproduce analyses in Iron Responsive Element (IRE)-mediated responses to iron dyshomeostasis in Alzheimer’s disease (Hin et al.)