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plasmidfinder

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andrewjpage / tiptoft

Predict plasmids from uncorrected long read data

bioinformatics research nanopore genomics pathogen bioinformatics-pipeline pacbio global-health kmer oxford-nanopore plasmid infectious-diseases long-reads uncorrected plasmidfinder

Updated Dec 5, 2019
Python

IbrahimElzahaby / Erasmus_MC_Internship

Plasmidome analysis to track the transfer route of AMR genes in bacteria

fasta-sequences rgi antimicrobial-resistance-genes prokka plasmidfinder abricate virulence-genes antimicrobial-genes-annotation amr-detection refseq-genbank panaroo

Updated Oct 15, 2023
Jupyter Notebook

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