Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Viral genomics analysis pipelines
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Parse Illumina sample sheets with Python
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Evaluating Nanopore-based bacterial variant calling
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
A modern Python library for BaseSpace Clarity LIMS.
🍸 Web-based database system for flow cell management (incl. REST API)
Snakemake based framework for NGS data analysis and management
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
Automated Tool for Global Screening Array analysis
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
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