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germline

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pughlab / VisCap

VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.

copy-number-variation germline

Updated Dec 13, 2019
R

caravagnalab / TINC

Tumour-in-Normal Contamination assessment with evolutionary theory.

genomics cancer somatic-variants evolution germline contamination

Updated Apr 25, 2024
R

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