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@pughlab

Pugh Lab

The Pugh Laboratory at the Princess Margaret Cancer Centre

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  1. PughLabReadme PughLabReadme Public

    Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

    2

  2. cbioportal cbioportal Public

    Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    Java 2

  3. ConsensusCruncher ConsensusCruncher Public

    ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

    Jupyter Notebook 21 10

  4. VisCap VisCap Public

    VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

    R 22 12

  5. bamgineer bamgineer Public

    Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

    Python 37 14

  6. crescent crescent Public

    The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

    R 8 4

Repositories

Showing 10 of 105 repositories
  • tigerdb Public

    TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

    pughlab/tigerdb’s past year of commit activity
    TypeScript 0 0 0 1 Updated Nov 30, 2024
  • MEDIPIPE Public
    pughlab/MEDIPIPE’s past year of commit activity
    HTML 10 MIT 3 0 0 Updated Nov 28, 2024
  • matchminer-api Public Forked from dfci/matchminer-api

    A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

    pughlab/matchminer-api’s past year of commit activity
    Python 0 12 0 0 Updated Nov 28, 2024
  • ctims Public

    CTIMS project

    pughlab/ctims’s past year of commit activity
    CSS 2 Apache-2.0 10 8 3 Updated Nov 27, 2024
  • ctims-pages Public

    CTIMS Github Pages

    pughlab/ctims-pages’s past year of commit activity
    0 0 0 0 Updated Nov 26, 2024
  • pipeline-suite Public

    Collection of pipelines for NGS analysis along with utilities

    pughlab/pipeline-suite’s past year of commit activity
    Perl 4 2 0 0 Updated Nov 21, 2024
  • TRI_LRWGS_glioma Public
    pughlab/TRI_LRWGS_glioma’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 29, 2024
  • HCC_cfMeDIP Public
    pughlab/HCC_cfMeDIP’s past year of commit activity
    R 1 0 0 0 Updated Sep 30, 2024
  • cbioportal-docs Public
    pughlab/cbioportal-docs’s past year of commit activity
    0 0 0 0 Updated Sep 6, 2024
  • oncographer Public

    OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard

    pughlab/oncographer’s past year of commit activity
    TypeScript 5 1 0 0 Updated Aug 30, 2024
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