10000 add geoparquet/arrow drivers for GDAL by cboettig · Pull Request #633 · rocker-org/rocker-versioned2 · GitHub
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add geoparquet/arrow drivers for GDAL #633

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Merged
merged 12 commits into from
Apr 21, 2023
Merged

add geoparquet/arrow drivers for GDAL #633

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987f23b
add geoparquet/arrow drivers for GDAL
cboettig Apr 19, 2023
e6543d5
purge previous install
cboettig Apr 19, 2023
9e0410a
cmake tweak
cboettig Apr 19, 2023
81442c5
default NCPUS valid value for cmake
cboettig Apr 19, 2023
a5dfe21
attempting to address linter issues
cboettig Apr 19, 2023
193d958
formatting
eitsupi Apr 19, 2023
ca4c413
format: make linter happy
eitsupi Apr 19, 2023
69c7e2e
format: make linter happy
eitsupi Apr 19, 2023
6f1ad6f
chore: ensure install lsb_release
eitsupi Apr 19, 2023
0acb40d
fix: fix typo of package name
eitsupi Apr 19, 2023
714a22b
preserve default for install2.r
cboettig Apr 21, 2023
58bc0d4
need to adjust my vim tabstop
cboettig Apr 21, 2023
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28 changes: 20 additions & 8 deletions scripts/experimental/install_dev_osgeo.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,12 @@ GEOS_VERSION=${GEOS_VERSION:-"latest"}
CRAN=${CRAN_SOURCE:-"https://cloud.r-project.org"}
echo "options(repos = c(CRAN = '${CRAN}'))" >>"${R_HOME}/etc/Rprofile.site"

# cmake does not understand "-1" as "all cpus"
CMAKE_CORES=${NCPUS}
if [ "${CMAKE_CORES}" = "-1" ]; then
CMAKE_CORES=$(nproc --all)
fi

# a function to install apt packages only if they are not installed
function apt_install() {
if ! dpkg -s "$@" >/dev/null 2>&1; then
Expand All @@ -33,6 +39,7 @@ export DEBIAN_FRONTEND=noninteractive
apt_install \
gdb \
git \
lsb-release \
libcairo2-dev \
libcurl4-openssl-dev \
libexpat1-dev \
Expand Down Expand Up @@ -64,6 +71,11 @@ apt_install \
cmake \
libtiff5-dev

## geoparquet support
wget https://apache.jfrog.io/artifactory/arrow/"$(lsb_release --id --short | tr '[:upper:]' '[:lower:]')"/apache-arrow-apt-source-latest-"$(lsb_release --codename --short)".deb
apt_install -y -V ./apache-arrow-apt-source-latest-"$(lsb_release --codename --short)".deb
apt-get update && apt-get install -y -V libarrow-dev libparquet-dev libarrow-dataset-dev

LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

# install geos
Expand All @@ -72,6 +84,9 @@ if [ "$GEOS_VERSION" = "latest" ]; then
GEOS_VERSION=$(wget -qO- "https://api.github.com/repos/libgeos/geos/git/refs/tags" | grep -oP "(?<=\"ref\":\s\"refs/tags/)\d+\.\d+\.\d+" | tail -n -1)
fi

## purge existing directories to permit re-run of script with updated versions
rm -rf geos* proj* gdal*

wget https://download.osgeo.org/geos/geos-"${GEOS_VERSION}".tar.bz2
bzip2 -d geos-*bz2
tar xf geos*tar
Expand All @@ -80,9 +95,7 @@ cd geos*
mkdir build
cd build
cmake ..
make
make install
cd ../..
cmake --build . --parallel "$CMAKE_CORES" --target install
ldconfig

# install proj
Expand All @@ -100,8 +113,7 @@ cd proj-*
mkdir build
cd build
cmake ..
make
make install
cmake --build . --parallel "$CMAKE_CORES" --target install
cd ../..
ldconfig

Expand All @@ -119,9 +131,9 @@ rm gdal*tar.gz
cd gdal*
mkdir build
cd ./build
# cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_JAVA_BINDINGS:BOOL=OFF -DBUILD_CSHARP_BINDINGS:BOOL=OFF
cmake -DCMAKE_BUILD_TYPE=Release ..
make
make install
cmake --build . --parallel "$CMAKE_CORES" --target install
ldconfig

install2.r --error --skipmissing --skipinstalled -n "$NCPUS" \
Expand Down Expand Up @@ -157,7 +169,7 @@ install2.r --error --skipmissing --skipinstalled -n "$NCPUS" \

# Clean up
rm -rf /var/lib/apt/lists/*
rm -r /tmp/downloaded_packages
rm -rf /tmp/downloaded_packages

# Check the geospatial packages

Expand Down
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