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Issues list

LongReads: Inefficient use of ressources in me-step
#386 opened May 6, 2025 by BeneKenobi
@leonschuetz
LongReads: Errors connecting to ebi.ac.uk in re-step
#385 opened May 6, 2025 by BeneKenobi
@leonschuetz
2
Rebuild apptainer container with ubunut 24.04 base image
#383 opened Apr 30, 2025 by KilianIlius
7 of 13 tasks
@KilianIlius
Add Support for ALT-Chromosomes
#382 opened Apr 30, 2025 by marc-sturm
4 tasks
@marc-sturm
3
Problem with adaptation of vep apptainer version
#379 opened Apr 11, 2025 by alex-seitz
5
Create BAF file from VCF (somatic)
#378 opened Apr 8, 2025 by KilianIlius
3 of 6 tasks
@KilianIlius
DRAGEN reanalysis project
#375 opened Apr 4, 2025 by marc-sturm
5 tasks
@marc-sturm
megSAP: tools/databases update
#374 opened Apr 4, 2025 by marc-sturm
High CPU load / long runtime in vc step
#373 opened Apr 3, 2025 by BeneKenobi
@marc-sturm
8
LongReads: longphase not phasing SVs bug
#370 opened Mar 27, 2025 by leonschuetz
LongReads: add QC parameter for accuracy model
#367 opened Mar 26, 2025 by leonschuetz
use DeepVariant instead of freebayes for SR
#365 opened Mar 21, 2025 by marc-sturm
8 of 9 tasks
@marc-sturm @KilianIlius
1
megSAP in AWS
#364 opened Mar 20, 2025 by KilianIlius
4 of 11 tasks
@KilianIlius
1
data_setup vs. no_sync
#362 opened Mar 18, 2025 by BeneKenobi
@marc-sturm
6
LongReads: Add support for superaccuracy
#360 opened Mar 6, 2025 by leonschuetz
5 tasks
1
Add ORA support
#359 opened Mar 6, 2025 by leonschuetz
@marc-sturm @leonschuetz
2
LongReads: Statistics for methylation
#349 opened Feb 26, 2025 by leonschuetz
2 tasks
LongReads: test tandem-genotypes
#341 opened Feb 6, 2025 by leonschuetz
1 task
Create script for SV validation
#337 opened Jan 30, 2025 by leonschuetz
@leonschuetz
LongReads: add phasing tracks for multi-sample
#333 opened Jan 29, 2025 by leonschuetz
LongReads: Mosaic Calling
#330 opened Jan 22, 2025 by leonschuetz
LongReads: Implement mosaic calling
#327 opened Jan 16, 2025 by leonschuetz
LongReads: update straglr
#326 opened Jan 16, 2025 by leonschuetz
1 task
2
LongReads: Support restarted runs in runqc_parser_ont.php
#318 opened Dec 9, 2024 by leonschuetz
3 tasks
backup_run_analyzed.php: add script for analyzed data backup mode
#312 opened Nov 21, 2024 by marc-sturm
@marc-sturm
ProTip! What’s not been updated in a month: updated:<2025-04-06.
0