8000 Rebuild apptainer container with ubunut 24.04 base image · Issue #383 · imgag/megSAP · GitHub
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Rebuild apptainer container with ubunut 24.04 base image #383

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KilianIlius opened this issue Apr 30, 2025 · 0 comments
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Rebuild apptainer container with ubunut 24.04 base image #383

KilianIlius opened this issue Apr 30, 2025 · 0 comments
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KilianIlius commented Apr 30, 2025 •
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When trying to build apptainer container with an older ubuntu base image on a ubunut 24.04 host system the following error occurs:

INFO:    Running post scriptlet
/.singularity.d/libs/faked: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /.singularity.d/libs/faked)
/.singularity.d/libs/faked: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /.singularity.d/libs/faked)
fakeroot: error while starting the `faked' daemon.
/.singularity.d/libs/fakeroot: 1: kill: Usage: kill [-s sigspec | -signum | -sigspec] [pid | job]... or
kill -l [exitstatus]
.
.
.
FATAL:   While performing build: while running engine: while running %post section: exit status 1

the container glibc library must be at least as new as the host's (apptainer/apptainer#2103)

Rebuild containers with ubuntu 24.04 base image:

  • SigProfiler
  • SpliceAI
  • straglrOn
  • strelka2 (python2)
  • umi-tools
  • arriba
  • ClinCNV
  • happy (python2)
  • hla-genotyper
  • longphase
  • manta (python2)
  • python3
  • scarHRD
  • test new containers
  • upload new containers
@KilianIlius KilianIlius self-assigned this Apr 30, 2025
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