Stars
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Finder of Somatic Fusion Genes in RNA-seq data
MODER2 is a program for learning DNA binding motifs from SELEX datasets.
Code used for the single-cell RNA-Seq batch effects paper
Visualize and annotate genomic coverage with ggplot2
Analyzing and visualizing KEGG information using the grammar of graphics
21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Nature Methods: RNA foundation model (together with RhoFold)
All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
Generate an interactive dot plot from mummer or minimap alignments
Command-line tool for the visualization of splicing events across multiple samples
A python extension for quick access to bigWig and bigBed files
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
An open access book on scientific visualization using python and matplotlib
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
A tool to find sequencing data and metadata from public databases.