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protViz Public
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
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ProteoBench Public
Forked from Proteobench/ProteoBenchProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of prot…
Jupyter Notebook Apache License 2.0 UpdatedMay 22, 2025 -
Comet Public
Forked from UWPR/CometAn tandem mass spectrometry (MS/MS) sequence database search tool.
C Apache License 2.0 UpdatedMar 25, 2025 -
shinyRecmap Public
colorful shiny application using recmap and U.S. census data
R UpdatedFeb 28, 2025 -
depiction Public
Forked from fgcz/depictionProcess and Visualize Mass-Spectrometry Imaging (MSI) data
Python Apache License 2.0 UpdatedJan 20, 2025 -
recmap Public
draw rectangular statistical cartograms - CRAN package
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rawrr Public
Forked from fgcz/rawrrComputational analysis of raw-formatted mass spectrometry data in R. Brings your Orbitrap data to life!
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2023-EuBIC-MS-proc Public
Proceedings EuBIC-MS dev meeting 2023 (JPROT-D-24-00190)
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bfabricPy Public
Forked from fgcz/bfabricPyAPI and commad line tools for b-fabric
Python UpdatedMay 29, 2024 -
alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold.
Python Apache License 2.0 UpdatedMay 14, 2024 -
sage Public
Forked from lazear/sageProteomics searching so fast it feels like magic
Rust MIT License UpdatedMay 8, 2024 -
CD-MRG-PlatePlanner Public
Forked from ssi-dk/CD-MRG-PlatePlannerPython package to create multi-well plate layouts for specimen sample data. Automatically distributes quality control samples according to scheme in config file.
Python MIT License UpdatedApr 17, 2024 -
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uvpd Public
Ultra HRMS in combination with UVPD fragmentation for enhanced structural identification of organic micropollutants
R UpdatedJan 31, 2024 -
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pwiz Public
Forked from ProteoWizard/pwizThe ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
C# Apache License 2.0 UpdatedOct 23, 2023 -
koina-Rclient Public
R lang client for koina (DLOmix) service
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opentims Public
Forked from michalsta/opentimsOpen-source C++ and Python module for opening binary timsTOF data files.
C Other UpdatedAug 11, 2023 -
oktoberfest Public
Forked from wilhelm-lab/oktoberfestPublic repo oktoberfest
Python MIT License UpdatedJul 3, 2023 -
alphatims Public
Forked from MannLabs/alphatimsAn open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
Python Apache License 2.0 UpdatedJun 13, 2023 -
alphapept Public
Forked from MannLabs/alphapeptA modular, python-based framework for mass spectrometry. Powered by nbdev.
HTML Apache License 2.0 UpdatedMay 22, 2023 -
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client Public
Forked from triton-inference-server/clientTriton Python, C++ and Java client libraries, and GRPC-generated client examples for go, java and scala.
C++ BSD 3-Clause "New" or "Revised" License UpdatedApr 20, 2023
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