8000 Replace QUAST custom modules with official nf-core ones · Issue #748 · nf-core/mag · GitHub
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Replace QUAST custom modules with official nf-core ones #748
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Replace QUAST custom modules with official nf-core ones#748
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enhancementNew feature or request
@amizeranschi

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@amizeranschi
amizeranschi
opened on Jan 20, 2025

Description of feature

Currently there is no way to send customized parameters to QUAST via ext.args. It would be helpful to enable this feature, for example, to allow setting customized --contig-thresholds for report generation.
https://quast.sourceforge.net/docs/manual.html#sec2.3

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