8000 ENG-387 Wait after ingest if needed by leite08 · Pull Request #3944 · metriport/metriport · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

ENG-387 Wait after ingest if needed #3944

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Jun 1, 2025

Conversation

leite08
Copy link
Member
@leite08 leite08 commented Jun 1, 2025

Dependencies

none

Description

Wait after ingest if needed - see this.

Throw on ingestion error - see ticket.

Testing

  • Local
    • none
  • Staging
    • ingest on search works
  • Sandbox
    • none
  • Production
    • none

Release Plan

  • Merge this

Summary by CodeRabbit

  • Bug Fixes

    • Improved error handling during resource ingestion by throwing detailed errors when issues are detected, providing clearer feedback.
  • Chores

    • Introduced a short delay after certain ingestion processes to enhance reliability.
    • Removed unnecessary debug logging from delete operations to streamline logs.

leite08 added 2 commits May 31, 2025 23:16
Ref eng-387

Signed-off-by: Rafael Leite <2132564+leite08@users.noreply.github.com>
Ref eng-387

Signed-off-by: Rafael Leite <2132564+leite08@users.noreply.github.com>
Copy link
linear bot commented Jun 1, 2025

Copy link
coderabbitai bot commented Jun 1, 2025

Walkthrough

The changes introduce a 1-second delay after ingestion in the ingestIfNeeded function, refactor error handling in the ingestion process to throw a structured error instead of logging, and remove a debug log from the OpenSearch FHIR ingestor's delete method. No public API signatures are altered except for a renamed and behaviorally updated error handling function.

Changes

File(s) Change Summary
packages/core/src/command/consolidated/search/fhir-resource/ingest-if-needed.ts Added a 1-second delay after calling ingestConsolidatedIntoSearchEngine using a sleep utility.
packages/core/src/command/consolidated/search/fhir-resource/ingest-lexical.ts Renamed captureErrors to processErrors, changed behavior to throw a structured error, removed capture import, updated call site, and added JSDoc.
packages/core/src/external/opensearch/fhir-ingestor.ts Removed debug log statement from the delete method; no other logic modified.

Sequence Diagram(s)

sequenceDiagram
    participant Caller
    participant ingestIfNeeded
    participant ingestConsolidatedIntoSearchEngine
    participant sleep

    Caller->>ingestIfNeeded: invoke()
    ingestIfNeeded->>ingestConsolidatedIntoSearchEngine: ingest()
    ingestConsolidatedIntoSearchEngine-->>ingestIfNeeded: return
    ingestIfNeeded->>sleep: wait(1000ms)
    sleep-->>ingestIfNeeded: return
    ingestIfNeeded-->>Caller: return
Loading
sequenceDiagram
    participant ingestPatientConsolidated
    participant processErrors

    ingestPatientConsolidated->>processErrors: process errors (errors, cxId, patientId, log)
    processErrors->>processErrors: Check if errors exist
    alt errors exist
        processErrors->>console: log error details
        processErrors-->>ingestPatientConsolidated: throw MetriportError
    else no errors
        processErrors-->>ingestPatientConsolidated: return
    end
Loading

Possibly related PRs

Warning

There were issues while running some tools. Please review the errors and either fix the tool's configuration or disable the tool if it's a critical failure.

🔧 ESLint

If the error stems from missing dependencies, add them to the package.json file. For unrecoverable errors (e.g., due to private dependencies), disable the tool in the CodeRabbit configuration.

npm error code ERR_SSL_WRONG_VERSION_NUMBER
npm error errno ERR_SSL_WRONG_VERSION_NUMBER
npm error request to https://10.0.0.28:4873/punycode/-/punycode-2.3.1.tgz failed, reason: C0EC7C13E07F0000:error:0A00010B:SSL routines:ssl3_get_record:wrong version number:../deps/openssl/openssl/ssl/record/ssl3_record.c:354:
n 8000 pm error
npm error A complete log of this run can be found in: /.npm/_logs/2025-06-01T02_19_34_648Z-debug-0.log

✨ Finishing Touches
  • 📝 Generate Docstrings

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Explain this complex logic.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai explain this code block.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and explain its main purpose.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Support

Need help? Create a ticket on our support page for assistance with any issues or questions.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai generate docstrings to generate docstrings for this PR.
  • @coderabbitai generate sequence diagram to generate a sequence diagram of the changes in this PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

Copy link
@coderabbitai coderabbitai bot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Actionable comments posted: 1

🧹 Nitpick comments (1)
packages/core/src/command/consolidated/search/fhir-resource/ingest-if-needed.ts (1)

41-41: Consider making the delay duration configurable.

The 1-second delay addresses the PR requirement and likely handles eventual consistency with OpenSearch. However, consider making this configurable to accommodate different environments or ingestion sizes.

-const WAIT_AFTER_INGESTION_IN_MILLIS = 1_000;
+const WAIT_AFTER_INGESTION_IN_MILLIS = Config.getWaitAfterIngestionMillis() ?? 1_000;

This would allow environment-specific tuning while maintaining the current default behavior.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 6b1b987 and 19ad5ec.

📒 Files selected for processing (3)
  • packages/core/src/command/consolidated/search/fhir-resource/ingest-if-needed.ts (2 hunks)
  • packages/core/src/command/consolidated/search/fhir-resource/ingest-lexical.ts (3 hunks)
  • packages/core/src/external/opensearch/fhir-ingestor.ts (2 hunks)
🧰 Additional context used
📓 Path-based instructions (1)
`**/*.ts`: - Use the Onion Pattern to organize a package's code in layers - Try to use immutable code and avoid sharing state across different functions, objects, and systems - Try...

**/*.ts: - Use the Onion Pattern to organize a package's code in layers

  • Try to use immutable code and avoid sharing state across different functions, objects, and systems
  • Try to build code that's idempotent whenever possible
  • Prefer functional programming style functions: small, deterministic, 1 input, 1 output
  • Minimize coupling / dependencies
  • Avoid modifying objects received as parameter
  • Only add comments to code to explain why something was done, not how it works
  • Naming
    • classes, 8000 enums: PascalCase
    • constants, variables, functions: camelCase
    • file names: kebab-case
    • table and column names: snake_case
    • Use meaningful names, so whoever is reading the code understands what it means
    • Don’t use negative names, like notEnabled, prefer isDisabled
    • For numeric values, if the type doesn’t convey the unit, add the unit to the name
  • Typescript
    • Use types
    • Prefer const instead of let
    • Avoid any and casting from any to other types
    • Type predicates: only applicable to narrow down the type, not to force a complete type conversion
    • Prefer deconstructing parameters for functions instead of multiple parameters that might be of
      the same type
    • Don’t use null inside the app, only on code interacting with external interfaces/services,
      like DB and HTTP; convert to undefined before sending inwards into the code
    • Use async/await instead of .then()
    • Use the strict equality operator ===, don’t use abstract equality operator ==
    • When calling a Promise-returning function asynchronously (i.e., not awaiting), use .catch() to
      handle errors (see processAsyncError and emptyFunction depending on the case)
    • Date and Time
      • Always use buildDayjs() to create dayjs instances
      • Prefer dayjs.duration(...) to create duration consts and keep them as duration
  • Prefer Nullish Coalesce (??) than the OR operator (||) to provide a default value
  • Avoid creating arrow functions
  • Use truthy syntax instead of in - i.e., if (data.link) not if ('link' in data)
  • Error handling
    • Pass the original error as the new one’s cause so the stack trace is persisted
    • Error messages should have a static message - add dynamic data to MetriportError's additionalInfo prop
    • Avoid sending multiple events to Sentry for a single error
  • Global constants and variables
    • Move literals to constants declared after imports when possible (avoid magic numbers)
    • Avoid shared, global objects
  • Avoid using console.log and console.error in packages other than utils, infra and shared,
    and try to use out().log instead
  • Avoid multi-line logs
    • don't send objects as a second parameter to console.log() or out().log()
    • don't create multi-line strings when using JSON.stringify()
  • Use eslint to enforce code style
  • Use prettier to format code
  • max column length is 100 chars
  • multi-line comments use /** */
  • scripts: top-level comments go after the import
  • packages/core/src/command/consolidated/search/fhir-resource/ingest-if-needed.ts
  • packages/core/src/command/consolidated/search/fhir-resource/ingest-lexical.ts
  • packages/core/src/external/opensearch/fhir-ingestor.ts
🧠 Learnings (2)
packages/core/src/command/consolidated/search/fhir-resource/ingest-lexical.ts (1)
Learnt from: leite08
PR: metriport/metriport#3857
File: packages/core/src/command/consolidated/search/fhir-resource/search-lexical.ts:67-82
Timestamp: 2025-05-28T02:51:35.779Z
Learning: In the search-lexical.ts file, the user prefers to bubble up JSON parsing errors rather than catching and logging them. When processing FHIR resources from OpenSearch results, errors should be thrown and allowed to propagate up the call stack instead of being caught and silently ignored.
packages/core/src/external/opensearch/fhir-ingestor.ts (1)
Learnt from: leite08
PR: metriport/metriport#3857
File: packages/core/src/external/opensearch/fhir-ingestor.ts:188-191
Timestamp: 2025-05-28T01:13:24.057Z
Learning: In packages/core/src/external/opensearch/fhir-ingestor.ts, creating new OpenSearch Client instances per operation is acceptable because the client is lightweight and typically only one delete operation is executed per HTTP request.
⏰ Context from checks skipped due to timeout of 90000ms (2)
  • GitHub Check: check-pr / lint-build-test
  • GitHub Check: Analyze (javascript)
🔇 Additional comments (7)
packages/core/src/external/opensearch/fhir-ingestor.ts (2)

187-187: LGTM: Logging simplification is appropriate.

Removing the debug logging extraction simplifies the logging output while maintaining essential operational logs.


196-196: LGTM: Debug response logging removal reduces verbosity.

Removing the debug log of the response body is appropriate as it reduces log verbosity without losing critical operational information.

packages/core/src/command/consolidated/search/fhir-resource/ingest-if-needed.ts (2)

2-2: LGTM: Appropriate import for sleep functionality.

The import of the sleep utility aligns with the PR objective of adding a wait after ingestion.


9-9: LGTM: Well-named constant with appropriate unit suffix.

The constant follows naming conventions and includes the unit in the name as recommended by the coding guidelines.

packages/core/src/command/consolidated/search/fhir-resource/ingest-lexical.ts (3)

8-8: LGTM: Import change aligns with updated functionality.

The import change from capture to out utility is appropriate for the updated error handling approach.


58-61: LGTM: Function documentation updated appropriately.

The comment accurately reflects the new throwing behavior instead of the previous capturing/logging behavior.


74-80: Excellent error handling improvement.

This change significantly improves error handling by:

  1. Following coding guidelines: Uses MetriportError with structured metadata
  2. Aligning with best practices: Throws errors instead of silently logging them (consistent with retrieved learnings)
  3. Providing rich context: Includes cxId, patientId, and detailed error counts
  4. Maintaining observability: Still logs before throwing for immediate debugging

The error structure follows the recommended pattern with static message and dynamic data in extra.

@leite08 leite08 added this pull request to the merge queue Jun 1, 2025
Merged via the queue into develop with commit 08fa371 Jun 1, 2025
14 checks passed
@leite08 leite08 deleted the eng-387-wait-after-ingest-if-needed branch June 1, 2025 03:07
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants
0