Data Analysis for : Comprehensive germline genomic profiles of children, adolescents and young adults with solid tumors
- This github dir contains the data analysis jupyter notebooks, scripts and data tables accompaning the paper :
Comprehensive germline genomic profiles of children, adolescents and young adults with solid tumors- GermLine Analysis of Children, Adolescents, and Young Adults (C-AYA) with SolidTumor
- Authors :
Sara Akhavanfard, Roshan Padmanabhan, Lamis Yehia, Feixiong Cheng, Charis Eng
- KCPG_woAR_Oncoplot
- KCPG_Heatmap
- KCPG_LollipopPlots
- KCPG_woAR_TT-AdrenocorticalCarcinoma_Oncoplot
- KCPG_woAR_TT-Carcinoma_Oncoplot
- KCPG_woAR_TT-CentralNervousSystem_Oncoplot
- KCPG_woAR_TT-EwingsSarcoma_Oncoplot
- KCPG_woAR_TT-GermCellTumor_Oncoplot
- KCPG_woAR_TT-HighGradeGlioma_Oncoplot
- KCPG_woAR_TT-LowGradeGlioma_Oncoplot
- KCPG_woAR_TT-Neuroblastoma_Oncoplot
- KCPG_woAR_TT-Osteosarcoma_Oncoplot
- KCPG_woAR_TT-OtherSolidTumor_Oncoplot
- KCPG_woAR_TT-Retinoblastoma_Oncoplot
- KCPG_woAR_TT-Rhabdomyosarcoma_Oncoplot
- KCPG_woAR_TT-SoftTissueSarcoma_Oncoplot
- KCPG_woAR_TT-Wilmstumor_Oncoplot
- CandidateGenes_Oncoplot
- CandidateGenes_Heatmap
- CandidateGenes_LollipopPlots
- CandidateGenes_TT-AdrenocorticalCarcinoma_Oncoplot
- CandidateGenes_TT-Carcinoma_Oncoplot
- CandidateGenes_TT-CentralNervousSystem_Oncoplot
- CandidateGenes_TT-EwingsSarcoma_Oncoplot
- CandidateGenes_TT-GermCellTumor_Oncoplot
- CandidateGenes_TT-HighGradeGlioma_Oncoplot
- CandidateGenes_TT-LowGradeGlioma_Oncoplot
- CandidateGenes_TT-Neuroblastoma_Oncoplot
- CandidateGenes_TT-Osteosarcoma_Oncoplot
- CandidateGenes_TT-OtherSolidTumor_Oncoplot
- CandidateGenes_TT-Retinoblastoma_Oncoplot
- CandidateGenes_TT-Rhabdomyosarcoma_Oncoplot
- CandidateGenes_TT-SoftTissueSarcoma_Oncoplot
- CandidateGenes_TT-Wilmstumor_Oncoplot
- includes inhouse scipts to process and anlayze the data
- table dir contain the supplimentary excel files
- Browse the data at SRA RunSelector
- Summary List for project PRJNA559601 here