Evaluation framework for oncology foundation models (FMs)
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Jun 20, 2025 - Python
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oncology
Here are 82 public repositories matching this topic...
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
ai graphs segmentation cell-segmentation oncology single-cell-analysis graph-neural-networks spatial-transcriptomics spatial-omics xenium molecule-graphs
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Jun 12, 2025 - HTML
Using a Deep Learning CNN to detect acute lymphoblastic leukemia (ALL) from blood microscopy
machine-learning healthcare convolutional-neural-networks microscopy oncology sagemaker acute-lymphoblastic-leukemia blood-microscopy
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Oct 25, 2020 - Jupyter Notebook
VMAT modulation complexity index calculator based on https://github.com/victorgabr/ApertureComplexity
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Dec 22, 2021 - Python
Point of care system for AMPATH clinics
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Jun 2, 2025 - TypeScript
Clinical oncology tumor board decision support system made by the Decider project.
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Jun 7, 2025 - Python
Crossmapped phenotype ontologies for the oncology domain
ontology phenotypes cancer-research oncology phenotype-exchange-format phenotype-ontologies phenotype-corpus
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May 1, 2025 - R
Personalized Network-based Anti-Cancer Therapy Appointment
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Aug 19, 2023 - R
scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
cancer oncology single-cell-genomics cancer-detection single-cell-rna-seq tumor-detection tumor-classification cancer-cells tumor-cells cancer-classification malignancy-classification
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May 30, 2025 - Python
Clonal reconstruction from HTS data
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Oct 27, 2021 - R
Code from my work as Radiation Physicist Assistant at Cookeville Regional Medical Center
medical-physics radiation-oncology oncology dosimetry treatment-planning radiation-physics raystation radiation-therapy radiation-dosimetry
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Sep 24, 2022 - Python
Notes and procedures that I wrote as Radiation Physicist Assistant at Cookeville Regional Medical Center
qa notes quality-assurance procedures mobius tomotherapy elekta medical-physics radiation-oncology oncology dosimetry treatment-planning radiation-physics raystation radiation-therapy radiation-dosimetry linac mosaiq
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Jun 8, 2022
A 3D lesion segmentation method on whole-body PET images including automated quality control.
ai deep-learning pet segmentation 3d 2d mip oncology dmax lymphoma maximum-intensity-projections whole-body-segmentation autopet tmtv
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Jun 20, 2024
PD-1 Targeted Antibody Discovery Using AI Protein Diffusion
data-science bioinformatics ai cancer protein-structure computational-biology high-performance-computing drug-discovery antibody drug-design oncology pd-1 protein-docking antibody-design protien-folding protein-diffusion evodiff
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Sep 4, 2024 - Shell
🐝 | From Data to Prognosis: Embedding Multimodal Oncology Data for Precision Medicine
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May 30, 2025 - Jupyter Notebook
A python framework for creating image-guided cancer patient digital twins.
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May 16, 2025 - Jupyter Notebook
A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24
immunology oncology histopathology immunohistochemistry hematoxylin-eosin-staining foundation-models
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Mar 28, 2025 - Python
A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.
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Apr 25, 2025 - R
🧠 | Multimodal Integration of Oncology Data System
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May 31, 2025 - JavaScript
Read different files of TSO500 data analysis output and integrate the data.
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Jan 28, 2025 - R
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