Stars
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch
Python package built to ease deep learning on graph, on top of existing DL frameworks.
Python and R code used to produce the analysis in Almet et al. (2023), "Fibroblasts evolve in single-cell state to drive extracellular matrix and signaling changes across wound healing."
A noGDAL tool for reading and writing geotiff files
A tool that ensures your SSHFS mounts are as persistent as your disdain for authority.
Code used to benchmark Xenium
Cell-type Relationship Analysis Workflow Done Across Distances
Generate high quality, publication ready visualizations for single cell transcriptomics data.
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
A repository of pipelines for single-cell data in Nextflow DSL2
Single-cell analysis in Python. Scales to >100M cells.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
Making Protein folding accessible to all!
Bayesian Segmentation of Spatial Transcriptomics Data
R Package for 2D and 3D mapping and data visualization
Reference mapping for single-cell genomics
Recover damaged/unfinished mp4 files with h264 video
Formalizing and benchmarking open problems in single-cell genomics