- Developed for: Stephanie
- Team: Prochiantz
- Date: July 2022
- Software: QuPath
3D images of mouse brain sections.
3 channels:
- AF546-T1: ?
- AF488-T2: motoneurons
- DAPI-T3: nuclei
- Detect nuclei and motoneurons with Cellpose
- Keep motoneurons colocalizing with a nucleus only
- Compute intensity in the nucleus and cytoplasm of each motoneuron in AF546-T1 channel
- Cellpose QuPath extension + cyto and cyto2 models
Version 1 released on July 29, 2022.