Estimation of Anthocyanins in Winter Wheat Based on Band Screening Method and Genetic Algorithm Optimization Models
"> Figure 1
<p>The schematic of the experimental design. (<b>a</b>) Thirty-six experimental small plots of each experiment; (<b>b</b>) Ten on-farm plots in Experiment I. (<b>c</b>) Four on-farm plots in Experiment II; (<b>d</b>) Booting: 26 March 2017; (<b>e</b>) Heading: 14 April 2017; (<b>f</b>) Flowering: 17 May 2017; (<b>g</b>) Filling: 26 May 2017; (<b>h</b>) Booting: 29 March 2018; (<b>i</b>) Heading: 18 April 2018; (<b>j</b>) Flowering: 7 May 2018; (<b>k</b>) Filling: 22 May 2018. Note: The schematic representation of the satellite in the background (March 2016) was obtained from Google Earth Pro. The letter “D” in table (<b>b</b>) and table (<b>c</b>) represents the on-farm plot.</p> "> Figure 2
<p>Flowchart of variable selection, model construction and evaluation.</p> "> Figure 3
<p>IRIV_SPA extracts SBS of the original spectrum during the booting stage.</p> "> Figure 4
<p>Algorithm flow of GA_BP network.</p> "> Figure 5
<p>(<b>a</b>) The number of days after planting. (<b>b</b>) Characterizations of OS at each fertility stage. (<b>c</b>) Characterizations of FDS at each fertility stage. (<b>d</b>) Correlation between anthocyanin and OS; (<b>e</b>) Correlation between anthocyanin and FDS.</p> "> Figure 6
<p>The heatmaps of |r| of FDS_VIs2 with anthocyanin at the booting stage and heading stage. (<b>a</b>): booting stage; (<b>b</b>): heading stage.</p> "> Figure 7
<p>The heatmaps of |r| of FDS_VIs3 with anthocyanin at the booting stage. (<b>a</b>): FDS_MARI; (<b>b</b>): FDS_EVI; (<b>c</b>): FDS_VIVD; (<b>d</b>): FDS_TVI; (<b>e</b>): FDS_PSRI.</p> "> Figure 8
<p>The accuracy parameters of MLs (SBS) for each fertility stage. (<b>a</b>): booting stage; (<b>b</b>): heading stage; (<b>c</b>): flowering stage; (<b>d</b>): filling stage. Rm<sup>2</sup> represents R<sup>2</sup> of the modeling set, Rv<sup>2</sup> represents R<sup>2</sup> of the verification set, RPDm represents RPD of the modeling set, RPDv represents RPD of the verification set, RMSEm represents RMSE of the modeling set, and RMSEv represents RMSE of the verification set.</p> "> Figure 9
<p>The accuracy parameters of MLs (VIo2) for each fertility stage. (<b>a</b>): booting stage; (<b>b</b>): heading stage; (<b>c</b>): flowering stage; (<b>d</b>): filling stage. Rm<sup>2</sup> represents R<sup>2</sup> of the modeling set, Rv<sup>2</sup> represents R<sup>2</sup> of the verification set, RPDm represents RPD of the modeling set, RPDv represents RPD of the verification set, RMSEm represents RMSE of the modeling set, and RMSEv represents RMSE of the verification set.</p> "> Figure 10
<p>The accuracy parameters of MLs (VIo3) for each fertility stage. (<b>a</b>): booting stage; (<b>b</b>): heading stage; (<b>c</b>): flowering stage; (<b>d</b>): filling stage. Rm<sup>2</sup> represents R<sup>2</sup> of the modeling set, Rv<sup>2</sup> represents R<sup>2</sup> of the verification set, RPDm represents RPD of the modeling set, RPDv represents RPD of the verification set, RMSEm represents RMSE of the modeling set, and RMSEv represents RMSE of the verification set.</p> "> Figure 11
<p>Optimal predicted anthocyanin values and measured values for each fertility stage. (<b>a</b>): booting stage; (<b>b</b>): heading stage; (<b>c</b>): flowering stage; (<b>d</b>): filling stage.</p> ">
Abstract
:1. Introduction
2. Materials and Methods
2.1. Overview of the Experimental Design
2.2. Data Acquisition
2.2.1. Hyperspectral Data Acquisition and Preprocessing
2.2.2. Determination of Relative Anthocyanin Values
2.3. Methods and Models
2.3.1. Variable Selection Method
2.3.2. Modeling and Verification
2.3.3. Modeling Approaches
2.3.4. Checking the Accuracy of Models
3. Results
3.1. Characterizations of Spectrum and Correlation between Anthocyanin and Spectrum
3.2. Selection of SBS and VIo
3.2.1. Selection of SBS Based on IRIV_SPA
3.2.2. Selection of VIo Based on the Principle of Maximum Relevance
3.3. Anthocyanin Estimation Based on Models and GA Optimization
4. Discussion
4.1. BSM: Screening for Optimal Sensitive Bands and Band Combinations
4.2. Predictive Accuracy of Anthocyanin and Its Influencing Factors
4.3. Optimizing RF, BP, and KELM with GA
5. Conclusions
- (1)
- Among the models, the GA_RF model was consistently excellent, and VIo3 was remarkable for estimating anthocyanin values. The model GA_RF of FDS data based on VIo3 during the filling stage had the best performance (Rv2 = 0.950, RMSEv = 0.005, RPDv = 4.575) among all the models.
- (2)
- The first-order differential processing can effectively improve the correlation between anthocyanin and SBS, VIo2, and VIo3. The model performances of the FDS were better than that of OS on the whole, and the Rv2 values of the optimal models of FDS were all greater than 0.89.
- (3)
- The GA-optimized models showed an overall increase of 0.00% to 18.93% in the explanation of anthocyanins.
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Experiments | Variety | N Rate (Kg/hm2) | P Rate (Kg/hm2) | K Rate (Kg/hm2) |
---|---|---|---|---|
Experiment I (2016–2017) | Xiaoyan 22 | 0, 30, 60, 90, 120, 150 | 0, 30, 60, 90, 120, 150 | 0, 22.5, 45, 67.5, 90, 112.5 |
Experiment II (2017–2018) | Xiaoyan 22 | 0, 30, 60, 90, 120, 150 | 0, 22.5, 45, 67.5, 90, 112.5 | 0, 22.5, 45, 67.5, 90, 112.5 |
Dataset | Growth Stage | Sample Numbers | Min | Max | Mean | Standard Deviation | Kurtosis Zscore | Skewness Zscore | Coefficient of Variation/% |
---|---|---|---|---|---|---|---|---|---|
Modeling set | booting | 65 | 0.04 | 0.12 | 0.09 | 0.03 | 3.02 | 0.54 | 28.58% |
heading | 65 | 0.07 | 0.13 | 0.11 | 0.02 | 2.08 | 1.40 | 16.12% | |
flowering | 65 | 0.04 | 0.13 | 0.09 | 0.03 | 2.39 | 1.14 | 30.56% | |
filling | 65 | 0.06 | 0.16 | 0.09 | 0.02 | 0.03 | 2.16 | 24.10% | |
Verification set | booting | 21 | 0.04 | 0.11 | 0.08 | 0.03 | 1.78 | 0.34 | 29.88% |
heading | 21 | 0.08 | 0.13 | 0.11 | 0.02 | 1.56 | 0.50 | 14.51% | |
flowering | 21 | 0.04 | 0.12 | 0.08 | 0.03 | 1.73 | 0.20 | 34.60% | |
filling | 21 | 0.06 | 0.14 | 0.09 | 0.02 | 0.23 | 1.40 | 24.16% |
Growth Stage | Data | Sensitive Bands |
---|---|---|
booting | OS_IRIV_SPA | 722 nm 531 nm 939 nm |
FDS_IRIV_SPA | 741 nm 732 nm 446 nm 761 nm | |
heading | OS_IRIV_SPA | 770 nm 900 nm 852 nm 968 nm 353 nm |
FDS_IRIV_SPA | 803 nm 896 nm | |
flowering | OS_IRIV_SPA | 763 nm 1000 nm 720 nm |
FDS_IRIV_SPA | 742 nm 356 nm 959 nm | |
filling | OS_IRIV_SPA | 843 nm 834 nm |
FDS_IRIV_SPA | 729 nm 394 nm 948 nm 979 nm |
Title | VI | Equations | References |
---|---|---|---|
2 bands | ARI | [14] | |
MGRVI | [59] | ||
R/G | [14] | ||
RDVI | [60] | ||
OSAVI | [61] | ||
3 bands | MARI | [62] | |
EVI | [27] | ||
VDVI | [57] | ||
TVI | [60] | ||
PSRI | [63] |
Growth Stage | OS | FDS | ||
---|---|---|---|---|
Bands Combination | Correlation Coefficient | Bands Combination | Correlation Coefficient | |
booting | ARI (532 nm 706 nm) | 0.85 ** | ARI (520 nm 700 nm) | 0.86 ** |
MGRVI (520 nm 620 nm) | 0.47 ** | MGRVI (520 nm 690 nm) | 0.85 ** | |
RG (620 nm 520 nm) | 0.44 ** | RG (690 nm 520 nm) | 0.84 ** | |
RDVI (821 nm 632 nm) | 0.49 ** | RDVI (761 nm 640 nm) | 0.75 ** | |
OSAVI (821 nm 632 nm) | 0.41 ** | OSAVI (782 nm 629 nm) | 0.77 ** | |
heading | ARI (535 nm 703 nm) | 0.57 ** | ARI (568 nm 700 nm) | 0.61 ** |
MGRVI (520 nm 620 nm) | 0.63 ** | MGRVI (554 nm 668 nm) | 0.67 ** | |
RG (620 nm 520 nm) | 0.62 ** | RG (647 nm 568 nm) | 0.55 ** | |
RDVI (915 nm 679 nm) | 0.64 ** | RDVI (791 nm 671 nm) | 0.81 ** | |
OSAVI (920 nm 679 nm) | 0.55 ** | OSAVI (801 nm 622 nm) | 0.89 ** | |
flowering | ARI (535 nm 700 nm) | 0.76 ** | ARI (542 nm 700 nm) | 0.80 ** |
MGRVI (520 nm 620 nm) | 0.81 ** | MGRVI (557 nm 669 nm) | 0.86 ** | |
RG (620 nm 520 nm) | 0.80 ** | RG (651 nm 569 nm) | 0.82 ** | |
RDVI (760n m 620 nm) | 0.75 ** | RDVI (760 nm 688 nm) | 0.61 ** | |
OSAVI (760 nm 620 nm) | 0.77 ** | OSAVI (884 nm 669 nm) | 0.76 ** | |
filling | ARI (557 nm 744 nm) | 0.82 ** | ARI (533 nm 704 nm) | 0.87 ** |
MGRVI (530 nm 620 nm) | 0.83 ** | MGRVI (568 nm 657 nm) | 0.79 ** | |
RG (620 nm 530 nm) | 0.83 ** | RG (686 nm 525 nm) | 0.78 ** | |
RDVI (783 nm 690 nm) | 0.76 ** | RDVI (767 nm 687 nm) | 0.83 ** | |
OSAVI (882 nm 620 nm) | 0.82 ** | OSAVI (767 nm 686 nm) | 0.82 ** |
Growth Stage | OS | FDS | ||
---|---|---|---|---|
Bands Combination | Correlation Coefficient | Bands Combination | Correlation Coefficient | |
booting | MARI (557 nm 750 nm 821 nm) | 0.41 ** | MARI (541 nm 750 nm 782 nm) | 0.77 ** |
EVI (822 nm 632 nm 451 nm) | 0.57 ** | ESI (782 nm 629 nm 430 nm) | 0.77 ** | |
VDVI (570 nm 680 nm 434 nm) | 0.54 ** | VDVI (520 nm 690 nm 484 nm) | 0.85 ** | |
TVI (821 nm 520 nm 632 nm) | 0.53 ** | TVI (915 nm 554 nm 668 nm) | 0.80 ** | |
PSRI (620 nm 520 nm 760 nm) | 0.40 ** | PSRI (689 nm 520 nm 782 nm) | 0.80 ** | |
heading | MARI (544 nm 700 nm 914 nm) | 0.78 ** | MARI (568 nm 700 nm 802 nm) | 0.87 ** |
EVI (915 nm 680 nm 510 nm) | 0.66 ** | ESI (801 nm 622 nm 439 nm) | 0.89 ** | |
VDVI (520 nm 620 nm 510 nm) | 0.61 ** | VDVI (535 nm 642 nm 489 nm) | 0.70 ** | |
TVI (915 nm 570 nm 680 nm) | 0.69 ** | TVI (800 nm 555 nm 669 nm) | 0.88 ** | |
PSRI (620 nm 522 nm 920 nm) | 0.74 ** | PSRI (654 nm 570 nm 806 nm) | 0.70 ** | |
flowering | MARI (570 nm 741 nm 760 nm) | 0.80 ** | MARI (550 nm 720 nm 761 nm) | 0.77 ** |
EVI (760 nm 620 nm 430 nm) | 0.75 ** | ESI (884 nm 669 nm 501 nm) | 0.76 ** | |
VDVI (520 nm 620 nm 510 nm) | 0.79 ** | VDVI (539 nm 636 nm 451 nm) | 0.84 ** | |
TVI (760 nm 520 nm 620 nm) | 0.70 ** | TVI (845 nm 560 nm 670 nm) | 0.84 ** | |
PSRI (620 nm 521 nm 914 nm) | 0.75 ** | PSRI (670 nm 558 nm 845 nm) | 0.86 ** | |
filling | MARI (570 nm 750 nm 882 nm) | 0.77 ** | MARI (543 nm 722 nm 831 nm) | 0.81 ** |
EVI (881 nm 690 nm 430 nm) | 0.75 ** | EVI (767 nm 686 nm 444 nm) | 0.82 ** | |
VDVI (521 nm 620 nm 510 nm) | 0.82 ** | VDVI (523 nm 686 nm 433 nm) | 0.83 ** | |
TVI (783 nm 520 nm 690 nm) | 0.58 ** | TVI (767 nm 523 nm 686 nm) | 0.82 ** | |
PSRI (620 nm 520 nm 920 nm) | 0.83 ** | PSRI (649 nm 556 nm 822 nm) | 0.84 ** |
Discussion Items |
---|
Point 1 BSM: Screening for Optimal Bands and Band Combinations |
1. Screening for Optimal Bands |
(1) The bands screened in all stages were mainly concentrated at 720-1000 nm. |
(2) Certain near-infrared bands have some sensitivity to the anthocyanin values of winter wheat. |
2. Screening for Band Combinations |
(1) Seeking VIo can play a terrific role in VIs and improve prediction. |
(2) Different band combinations were selected for the same vegetation index in OS and FDS data. |
(3) The band combinations selected for the same vegetation index were not identical for different wheat growth stages. |
(4) The consequences of band combinations of MGRVI, RG, RDVI, and OSAVI showed that the bands selected for VIs in the same band range were divergent. |
(5) VIo was more suitable for estimating anthocyanin values than SBS. |
Point 2 Predictive Accuracy of Anthocyanin and Its Influencing Factors |
(1) The GA_RF model behaved both stably and marvelously in the four stages. |
(2) It is essential to calibrate and evaluate competitive estimation models based on specific experimental datasets. |
(3) It is crucial to compare transformation treatments and multiple methods based on different data periods and input variables. |
Point 3 Optimizing RF, BP, and KELM with GA |
(1) GA can optimize the parameters of RF, BP, and KELM. |
(2) GA can improve the accuracy of the modeling. |
(3) GA can effectively emphasize the effects of distinct models. |
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Miao, H.; Chen, X.; Guo, Y.; Wang, Q.; Zhang, R.; Chang, Q. Estimation of Anthocyanins in Winter Wheat Based on Band Screening Method and Genetic Algorithm Optimization Models. Remote Sens. 2024, 16, 2324. https://doi.org/10.3390/rs16132324
Miao H, Chen X, Guo Y, Wang Q, Zhang R, Chang Q. Estimation of Anthocyanins in Winter Wheat Based on Band Screening Method and Genetic Algorithm Optimization Models. Remote Sensing. 2024; 16(13):2324. https://doi.org/10.3390/rs16132324
Chicago/Turabian StyleMiao, Huiling, Xiaokai Chen, Yiming Guo, Qi Wang, Rui Zhang, and Qingrui Chang. 2024. "Estimation of Anthocyanins in Winter Wheat Based on Band Screening Method and Genetic Algorithm Optimization Models" Remote Sensing 16, no. 13: 2324. https://doi.org/10.3390/rs16132324
APA StyleMiao, H., Chen, X., Guo, Y., Wang, Q., Zhang, R., & Chang, Q. (2024). Estimation of Anthocyanins in Winter Wheat Based on Band Screening Method and Genetic Algorithm Optimization Models. Remote Sensing, 16(13), 2324. https://doi.org/10.3390/rs16132324