DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
Figure 5
The Tree Resulting from a UPGMA Tree Construction of Ten JASPAR Families (71 Motifs Total) Using the PCC Scoring Metric and Smith–Waterman (Ungapped) Alignment Method
The red line represents the level at which the CHlog metric estimates the optimal number of data clusters on the tree.