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Bioinformatics Research and Applications

6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings

  • Conference proceedings
  • © 2010

Overview

Editors:
  1. Mark Borodovsky

    1. School of Biology, Department of Biomedical Engineering and College of Computing, Georgia Institute of Technology, Atlanta, Georgia, USA

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  2. Johann Peter Gogarten

    1. Molecular and Cell Biology Department, University of Connecticut, Storrs, USA

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  3. Teresa M. Przytycka

    1. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, USA

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  4. Sanguthevar Rajasekaran

    1. Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6053)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2010.

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Table of contents (26 papers)

  1. Front Matter

    Download chapter PDF

  2. Tracing the Early Cell Divisions of Mouse Embryos by Single Cell RNA-Seq

    • Catalin Barbacioru
    Pages 1-1

  3. Successes and Failures of Elegant Algorithms in Computational Biology

    • Piotr Berman
    Pages 2-2

  4. Modeling without Borders: Creating and Annotating VCell Models Using the Web

    • Michael L. Blinov, Oliver Ruebenacker, James C. Schaff, Ion I. Moraru
    Pages 3-17

  5. Touring Protein Space with Matt

    • Noah Daniels, Anoop Kumar, Lenore Cowen, Matt Menke
    Pages 18-28

  6. Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites

    • Duong D. Doan, Patricia A. Evans
    Pages 29-37

  7. Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model

    • Martin Ehler, Vinodh Rajapakse, Barry Zeeberg, Brian Brooks, Jacob Brown, Wojciech Czaja et al.
    Pages 38-49

  8. Human Genome Annotation

    • Mark Gerstein
    Pages 50-51

  9. Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem

    • Rob Gysel, Dan Gusfield
    Pages 52-60

  10. Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data

    • Carlos H. A. Higa, Vitor H. P. Louzada, Ronaldo F. Hashimoto
    Pages 61-76

  11. Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features

    • Jay W. Kim, Rahul Singh
    Pages 77-88

  12. Essential Proteins Discovery from Weighted Protein Interaction Networks

    • Min Li, Jianxin Wang, Huan Wang, Yi Pan
    Pages 89-100

  13. Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets

    • Bo Liu, Mihai Pop
    Pages 101-112

  14. A Novel Approach for Compressing Phylogenetic Trees

    • Suzanne J. Matthews, Seung-Jin Sul, Tiffani L. Williams
    Pages 113-124

  15. Structure of Proximal and Distant Regulatory Elements in the Human Genome

    • Ivan Ovcharenko
    Pages 125-125

  16. Combinatorics in Recombinational Population Genomics

    • Laxmi Parida
    Pages 126-127

  17. Uncovering Hidden Phylogenetic Consensus

    • Nicholas D. Pattengale, Krister M. Swenson, Bernard M. E. Moret
    Pages 128-139

  18. An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks

    • Jun Ren, Jianxin Wang, Jianâer Chen, Min Li, Gang Chen
    Pages 140-151

  19. Fast Protein Structure Alignment

    • Yosi Shibberu, Allen Holder, Kyla Lutz
    Pages 152-165

  20. Predicting and Analyzing Cellular Networks

    • Mona Singh
    Pages 166-166
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Other volumes

  1. Bioinformatics Research and Applications

Editors and Affiliations

  • School of Biology, Department of Biomedical Engineering and College of Computing, Georgia Institute of Technology, Atlanta, Georgia, USA

    Mark Borodovsky

  • Molecular and Cell Biology Department, University of Connecticut, Storrs, USA

    Johann Peter Gogarten

  • National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, USA

    Teresa M. Przytycka

  • Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

    Sanguthevar Rajasekaran

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