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BIOSTEC BIOINFORMATICS 2013: Barcelona, Spain
- Pedro Fernandes, Jordi Solé-Casals, Ana L. N. Fred, Hugo Gamboa:
BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11 - 14 February, 2013. SciTePress 2013, ISBN 978-989-8565-35-8
Invited Speakers
Keynote Speakers
- Pedro Gómez Vilda:
Voice as a Vehicular Tool to Organic and Neurological Disease Tracking: How Far we May Go?. BIOSTEC 2013: IS-5 - Christian Jutten:
Source Separation for Biomedical Signals: Blind or not Blind?. BIOSTEC 2013: IS-7 - Adam R. Kampff:
The Present and Future of Devices for Neural Recording. BIOSTEC 2013: IS-9 - Richard Reilly:
All a Matter of Timing: Neuroscience and Neural Engineering of Abnormal Human Movement. BIOSTEC 2013: IS-11 - Vladimir Devyatkov:
Multimodal Interfaces: Capture, Tracking and Recognition. BIOSTEC 2013: IS-13 - Pietro Liò:
Methodologies for Systems Medicine: Time to Join the Forces of Bioengineering and Bioinformatics. BIOSTEC 2013: IS-27
Full Papers
- Carlos Fernandez-Lozano, José A. Seoane, Pablo Mesejo, Youssef S. G. Nashed, Stefano Cagnoni, Julián Dorado:
2D-PAGE Texture Classification using Support Vector Machines and Genetic Algorithms - An Hybrid Approach for Texture Image Analysis. BIOINFORMATICS 2013: 5-14 - Sohei Ito, Takuma Ichinose, Masaya Shimakawa, Naoko Izumi, Shigeki Hagihara, Naoki Yonezaki:
Qualitative Analysis of Gene Regulatory Networks using Network Motifs. BIOINFORMATICS 2013: 15-24 - Conrad J. Burden, Paul C. Leopardi, Sylvain Forêt:
The Distribution of Short Word Match Counts between Markovian Sequences. BIOINFORMATICS 2013: 25-33 - Yu Zhang:
Detecting Interacting Mutation Clusters in HIV-1 Drug Resistance. BIOINFORMATICS 2013: 34-43 - Woo-Chan Kim, Dong-Ho Cho:
Systematic Analysis of Structure of Multiple Tandem Repeat Arrays in the Human Genome. BIOINFORMATICS 2013: 44-52 - Ihtesham Ul Islam, Santa Di Cataldo, Andrea Bottino, Elisa Ficarra, Enrico Macii:
Classification of HEp-2 Staining Patterns in ImmunoFluorescence Images - Comparison of Support Vector Machines and Subclass Discriminant Analysis Strategies. BIOINFORMATICS 2013: 53-61 - Nic Herndon, Doina Caragea:
Naïve Bayes Domain Adaptation for Biological Sequences. BIOINFORMATICS 2013: 62-70 - Sebastian García-López, Jorge Alberto Jaramillo-Garzón, Leonardo Duque-Muñoz, César Germán Castellanos-Domínguez:
A Methodology for Optimizing the Cost Matrix in Cost Sensitive Learning Models applied to Prediction of Molecular Functions in Embryophyta Plants. BIOINFORMATICS 2013: 71-80 - Hao Wan, Gregory Barrett, Carolina Ruiz, Elizabeth F. Ryder:
Mining Association Rules that Incorporate Transcription Factor Binding Sites and Gene Expression Patterns in C. elegans. BIOINFORMATICS 2013: 81-89
Short Papers
- Irene Castro-Conde, Jacobo de Uña-Álvarez:
Performance of Beta-Binomial SGoF Multitesting Method for Dependent Gene Expression Levels - A Simulation Study. BIOINFORMATICS 2013: 93-97 - Claudia Rubiano, Thomas Merkle, Tim W. Nattkemper:
Using a Random Forest Classifier to Find Nuclear Export Signals in Proteins of Arabidopsis thaliana. BIOINFORMATICS 2013: 98-104 - Steffen Priebe, Uwe Menzel:
Assignment of Orthologous Genes by Utilization of Multiple Databases - The Orthology Package in R. BIOINFORMATICS 2013: 105-110 - Tarunendu Mapder, Lipika Adhya:
Computational Study of the Electrostatic Coupling of Membrane-spanning α-Helices Controlled by Dielectric Media. BIOINFORMATICS 2013: 111-115 - Heorhiy Byelas, Morris A. Swertz:
Visualization of Bioinformatics Workflows for Ease of Understanding and Design Activities. BIOINFORMATICS 2013: 116-121 - Mete Akgün, Mahmut Samil Sagiroglu:
Alternative PPM Model for Quality Score Compression. BIOINFORMATICS 2013: 122-126 - Vânia G. Almeida, J. Borba, Tânia Pereira, Helena Catarina Pereira, João M. R. Cardoso, Carlos Manuel B. A. Correia:
Data Mining based Methodologies for Cardiac Risk Patterns Identification. BIOINFORMATICS 2013: 127-133 - Julio De Alejandro Montalvo, George Panoutsos, Mahdi Mahfouf, James W. Catto:
Radial Basis Function Neural-fuzzy Model for Microarray Signature Identification. BIOINFORMATICS 2013: 134-139 - G. A. Arango-Argoty, Andrés Felipe Giraldo-Forero, Jorge Alberto Jaramillo-Garzón, Leonardo Duque-Muñoz, Germán Castellanos-Domínguez:
Predicting Molecular Functions in Plants using Wavelet-based Motifs. BIOINFORMATICS 2013: 140-145 - Ivan V. Kulakovskiy, Victor G. Levitsky, Dmitry G. Oschepkov, Ilya E. Vorontsov, Vsevolod J. Makeev:
Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices. BIOINFORMATICS 2013: 146-150 - Shelly Mahlab, Itai Linial, Michal Linial:
Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants. BIOINFORMATICS 2013: 151-157 - Swakkhar Shatabda, M. A. Hakim Newton, Duc Nghia Pham, Abdul Sattar:
A Hybrid Local Search for Simplified Protein Structure Prediction. BIOINFORMATICS 2013: 158-163 - Hamza Baali, Rini Akmeliawati, Momoh-Jimoh E. Salami:
Regularized Least Squares Applied to Heartbeat Classification using Transform-based and RR Intervals Features. BIOINFORMATICS 2013: 164-170 - Bráulio Roberto Gonçalves Marinho Couto, Marcelo Matos Santoro, Ana Paula Ladeira, Marcos Augusto dos Santos:
A Predictive Alignment-free Method based on Logistic Regression for Feature Selection and Classification of Protein Sequences. BIOINFORMATICS 2013: 171-177 - Jérôme Foussier, Pedro Fonseca, Xi Long, Steffen Leonhardt:
Automatic Feature Selection for Sleep/Wake Classification with Small Data Sets. BIOINFORMATICS 2013: 178-184 - Giulia Paciello, Elisa Ficarra, Alberto Zamò, Chiara Pighi, Carmelo Foti, Francesco Abate, Enrico Macii, Andrea Acquaviva:
A Novel Pipeline for V(D)J Junction Identification using RNA-Seq Paired-end Reads. BIOINFORMATICS 2013: 185-189 - Muserref Duygu Saçar, Jens Allmer:
Comparison of Four Ab Initio MicroRNA Prediction Tools. BIOINFORMATICS 2013: 190-195 - Mohammad Ali Moni, Pietro Liò, Luciano Milanesi:
Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue. BIOINFORMATICS 2013: 196-201 - Frédérique Hilliou, Trang Tran:
RqPCRAnalysis: Analysis of Quantitative Real-time PCR Data. BIOINFORMATICS 2013: 202-211 - Alejandro Chinea, José L. González Mora:
Structural Analysis of Nuclear Magnetic Resonance Spectroscopy Data. BIOINFORMATICS 2013: 212-222 - Ketil Malde:
Can Software Transactional Memory Make Concurrent Programs Simple and Safe?. BIOINFORMATICS 2013: 223-228 - Fernando Benites, Elena P. Sapozhnikova:
Generalized Association Rules for Connecting Biological Ontologies. BIOINFORMATICS 2013: 229-236 - Emmanouil Varitis, Dimitrios Sagris, David Constantine, Antonios Lontos:
Directional Variation of Trabecular Bone in the Femoral Head, a μ-CT based Approach. BIOINFORMATICS 2013: 237-241 - Saad Mneimneh, Syed Ali Ahmed, Nancy L. Greenbaum:
Multiple RNA Interaction - Formulations, Approximations, and Heuristics. BIOINFORMATICS 2013: 242-249
Posters
- Karol Kozak, Sandra Kaestner, Thomas Wild, Andreas Vonderheit, Benjamin Misselwitz, Ulrike Kutay, Gabor Csucs:
New Algorithm for Analysis of Off-target Effects in siRNA Screens. BIOINFORMATICS 2013: 253-260 - Shigeharu Ishida, Hideaki Umeyama, Mitsuo Iwadate, Y-h. Taguchi:
Structure Prediction with FAMS for Proteins Screened Critically to Autoimmune Diseases based upon Bioinformatics. BIOINFORMATICS 2013: 261-267 - Yang Liu, Jiangyu Li, Yiqing Mao, Xiaolei Wang, Dongsheng Zhao:
A Literature Evaluation of CUDA Compatible Sequence Aligners . BIOINFORMATICS 2013: 268-271 - Pawel Blazej, Pawel Mackiewicz, Malgorzata Wanczyk, Stanislaw Cebrat:
Evolution of Bacterial Genome under Changing Mutational Pressure - Computer Simulation Studies. BIOINFORMATICS 2013: 272-277 - Andrew T. Milnthorpe, Mikhail Soloviev:
Optimisation and Validation of a Minimum Data Set for the Identification and Quality Control of EST Expression Libraries. BIOINFORMATICS 2013: 278-281 - Peter Kupfer, Sebastian Vlaic, René Huber, Raimund W. Kinne, Reinhard Guthke:
Different Stimuli for Inference of Gene Regulatory Network in Rheumatoid Arthritis. BIOINFORMATICS 2013: 282-287 - Mark Onyango, Carsten Ade, Franz Cemic, Jürgen Hemberger:
QUASI: A Pipeline for the Quality Assessment and Statistical Inference on Next Generation Sequencing Data from Pooled shRNA Library Screens. BIOINFORMATICS 2013: 288-291 - Alexander Tsouknidas, Savvas Savvakis, Nikolaos Tsirelis, Antonios Lontos, Nikolaos Michailidis:
A Non-linear Finite Element Model for Assessment of Lumbar Spinal Injury Due to Dynamic Loading. BIOINFORMATICS 2013: 292-295 - Jiangyu Li, Yang Liu, Xiaolei Wang, Yiqing Mao, Yumin Wang, Dongsheng Zhao:
Hadoop-RINS - A Hadoop Accelerated Pipeline for Rapid Nonhuman Sequence Identification. BIOINFORMATICS 2013: 296-299 - Eduardo Campos dos Santos, Marcos Augusto dos Santos, Bráulio Roberto Gonçalves Marinho Couto, Julio Cesar Dias Lopes:
A Semantic-based Similarity of Human Drug Target Proteins. BIOINFORMATICS 2013: 300-303 - Chad Laing, Eduardo N. Taboada, Peter Kruczkiewicz, James E. Thomas, Victor P. J. Gannon:
A Dynamic Whole-genome Database for Comparative Analyses, Molecular Epidemiology and Phenotypic Summary of Bacterial Pathogens. BIOINFORMATICS 2013: 304-307 - Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara:
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS 2013: 308-311 - Guozhi Jiang, Eric S. Lau, Ying Wang, Andrea O. Y. Luk, Claudia H. Tam, Janice S. Ho, Vincent K. Lam, Heung M. Lee, Xiaodan Fan, Wing-Yee So, Juliana C. Chan, Ronald C. Ma:
Development of Prediction Models under Multiple Imputation for Coronary Heart Disease in Type 2 Diabetes Mellitus. BIOINFORMATICS 2013: 312-315 - Peter Kruczkiewicz, Steven Mutschall, Dillon Barker, James E. Thomas, Gary H. Van Domselaar, Victor P. J. Gannon, Catherine D. Carrillo, Eduardo N. Taboada:
MIST: A Tool for Rapid in silico Generation of Molecular Data from Bacterial Genome Sequences. BIOINFORMATICS 2013: 316-323 - Jörgen Brandt, Alexander Heyl:
AgED: Extraction and Evaluation of Elliptic Fourier Descriptors from Image Data in Phenotype Assessment Applications. BIOINFORMATICS 2013: 324-327 - Giuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database. BIOINFORMATICS 2013: 328-332
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