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Satoru Kuhara
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2010 – 2019
- 2014
- [j24]Toshihide Ono, Satoru Kuhara:
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH(R) terms. BMC Bioinform. 15: 179 (2014) - 2013
- [j23]Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda:
The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. 11(6) (2013) - [c20]Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara:
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS 2013: 308-311 - 2011
- [j22]Haretsugu Hishigaki, Satoru Kuhara:
hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j21]Hirofumi Suzaki, Satoru Kuhara:
An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates. J. Adv. Comput. Intell. Intell. Informatics 14(4): 325-343 (2010)
2000 – 2009
- 2009
- [c19]Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. Pacific Symposium on Biocomputing 2009: 251-263 - 2008
- [c18]Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara:
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM 2008: 417-420 - 2006
- [j20]Satoshi Niijima, Satoru Kuhara:
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE. BMC Bioinform. 7: 543 (2006) - [j19]Satoshi Niijima, Satoru Kuhara:
Gene subset selection in kernel-induced feature space. Pattern Recognit. Lett. 27(16): 1884-1892 (2006) - [c17]Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. Pacific Symposium on Biocomputing 2006: 559-571 - 2005
- [j18]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. 1(4): 429-446 (2005) - [j17]Satoshi Niijima, Satoru Kuhara:
Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection. J. Bioinform. Comput. Biol. 3(5): 1071-1088 (2005) - [c16]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) 2005: 911-918 - 2004
- [j16]Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
:
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. J. Bioinform. Comput. Biol. 2(1): 77-98 (2004) - [j15]Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima
An Integrated Comprehensive Workbench for Inferring Genetic Networks: voyagene. J. Bioinform. Comput. Biol. 2(3): 533-550 (2004) - 2003
- [j14]Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. J. Bioinform. Comput. Biol. 1(2): 231-252 (2003) - [j13]Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Use of Gene Networks for Identifying and Validating Drug Targets. J. Bioinform. Comput. Biol. 1(3): 459-474 (2003) - [j12]Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto:
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83(4): 777-788 (2003) - [j11]Tatsuya Akutsu
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. Theor. Comput. Sci. 292(2): 481-495 (2003) - [j10]Tatsuya Akutsu
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 298(1): 235-251 (2003) - [c15]Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. CSB 2003: 104-113 - [c14]Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. ECCB 2003: 227-236 - 2002
- [j9]Osamu Maruyama, Hideo Bannai, Yoshinori Tamada
Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146(1-4): 115-126 (2002) - [c13]Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. CSB 2002: 219-227 - [c12]Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada:
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS 2002: 1180-1185 - 2001
- [c11]Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano:
Learning Conformation Rules. Discovery Science 2001: 243-257 - 2000
- [j8]Tatsuya Akutsu
Inferring qualitative relations in genetic networks and metabolic pathways. Bioinform. 16(8): 727-734 (2000) - [j7]Tatsuya Akutsu
Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. J. Comput. Biol. 7(3-4): 331-343 (2000) - [c10]Tatsuya Akutsu
A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. Discovery Science 2000: 86-98 - [c9]Tatsuya Akutsu
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. RECOMB 2000: 8-14
1990 – 1999
- 1999
- [j6]Hideki Hirakawa, S. Muta, Satoru Kuhara:
The hydrophobic cores of proteins predicted by wavelet analysis. Bioinform. 15(2): 141-148 (1999) - [c8]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. Pacific Symposium on Biocomputing 1999: 17-28 - [c7]Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara:
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. Pacific Symposium on Biocomputing 1999: 182-189 - 1998
- [c6]Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano:
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA 1998: 695-702 - 1997
- [j5]Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara:
Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Comput. Appl. Biosci. 13(2): 183-190 (1997) - [c5]Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi:
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257 - 1995
- [j4]Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima:
Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. IEICE Trans. Inf. Syst. 78-D(11): 1377-1387 (1995) - [c4]Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara:
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. ISMB 1995: 359-366 - 1994
- [c3]Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa:
Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76 - [c2]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi:
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170 - 1993
- [j3]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara:
A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Comput. Appl. Biosci. 9(3): 259-265 (1993) - [j2]Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. New Gener. Comput. 11(3): 361-375 (1993) - 1992
- [c1]Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara:
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. FGCS 1992: 618-625
1980 – 1989
- 1984
- [j1]Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, Yoshiyuki Sakaki:
GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Res. 12(1): 89-99 (1984)
Coauthor Index
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