bamUtil Overview bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam. Getting Help If you have any questions please use the bamUtil GitHub page to raise and issue. See BamUtil: FAQ to see if your question has already been answered. Where to Find It The bamUtil repository is available both via
Objective Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies can be used to elucidate the biochemical basis of medically interesting traits leading to knowledge that will, ultimately, help us improve treatment and management of human disease. Biostatistics 666 is a Masters level course that introduces many of the concepts, stati
Overview of the bam2FastQ function of bamUtil The bam2FastQ option on the bamUtil converts a BAM file into FastQ files. This is necessary when only BAM files are delivered but a new alignment is desired. By converting BAM to FastQ files new alignments can be done using FastQ files NOTE: Secondary and Supplementary reads are skipped when converting to FastQ. It assumes that there will only be 2 rea
Welcome! Welcome to our wiki! If you would like to contribute, log-in or request an account. We recommend using your e-mail address or Michigan uniqname as your user id. For basic instructions, see the Wikipedia Tutorial. Sequence Analysis Tools We are developing software tools for the analysis of next generation sequence data. These tools include: Variant Calling with GlfSingle and GlfMultiples V
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