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20 pages, 5862 KiB  
Article
A Voting-Based Star Identification Algorithm Using a Partitioned Star Catalog
by Xu He, Lei Zhang, Jiawei He, Zhiya Mu, Zhuang Lv and Jun Wang
Appl. Sci. 2025, 15(1), 397; https://doi.org/10.3390/app15010397 - 3 Jan 2025
Viewed by 326
Abstract
With the rapid advancement of aerospace technology, the maneuverability of spacecraft has increasingly improved, creating a pressing demand for star sensors with a high attitude update rate and high precision. Star identification, as the most complex and time-consuming algorithm of star sensors, faces [...] Read more.
With the rapid advancement of aerospace technology, the maneuverability of spacecraft has increasingly improved, creating a pressing demand for star sensors with a high attitude update rate and high precision. Star identification, as the most complex and time-consuming algorithm of star sensors, faces stringent requirements for enhanced identification speed and an enhanced identification rate. Furthermore, as the space environment is becoming more complex, the need for star sensors with heightened detection sensitivity is growing to facilitate real-time and accurate alerts for various non-cooperative targets, which has led to a sharp increase in the number of high-magnitude navigation stars in the star catalog, significantly impeding the speed and rate of star identification. Traditional methods are no longer adequate to meet the current demand for star sensors with high identification speed and a high identification rate. Addressing these challenges, a voting-based star identification algorithm using a partitioned star catalog is proposed. Initially, a uniform partitioning method for the star catalog is introduced. Building on this, a navigation feature library using partitioned catalog neighborhoods as a basic unit is constructed. During star identification, a method based on a voting decision is employed for feature matching in the basic unit. Compared to conventional methods, the proposed algorithm significantly simplifies the navigation feature library and narrows the retrieval region during star identification, markedly enhancing identification speed while effectively reducing the probability of redundant and false matching. The performance of the proposed algorithm is validated through a simulation experiment and nighttime star observation experiment. Experimental results indicate an average identification rate of 99.760% and an average identification time of 8.861 milliseconds, exhibiting high robustness against position errors, magnitude errors, and false stars. The proposed algorithm presents a clear advantage over other common star identification methods, meeting the current requirement for star sensors with high star identification speed and a high identification rate. Full article
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<p>The distribution of the right ascension and declination of stars in the star catalog.</p>
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<p>Uniform partitioning of celestial sphere. The points A, B and C are the vertices of the regular icosahedron described by dotted lines.</p>
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<p>The star belongs to the celestial sphere zone. The red star represents a star randomly selected from the star catalog. The blue polyhedron is a regular icosahedron and the green region is one of its surfaces.</p>
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<p>The result of star catalog partitioning. Different colors are used to distinguish 20 divided regions of the star catalog.</p>
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<p>Construction of navigation feature library. The blue region represents the center of the thirteen partitions in a basic unit.</p>
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<p>The imaging model of the star sensor. The yellow stars represent the stars within the FOV of the star sensor.</p>
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<p>Schematic star image. The red stars represent the stars within the FOV of the star sensor. The colored lines represent the valid angular distances between two stars without repetition.</p>
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<p>Identification rate with different position errors.</p>
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<p>Identification rate with different magnitude errors.</p>
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<p>Identification rate with different numbers of false stars.</p>
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<p>Identification time with different numbers of stars.</p>
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<p>Nighttime stargazing experiment.</p>
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<p>Star image captured by star sensor. The numbers respectively represent the number of each star in the star image.</p>
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<p>Corresponding celestial region of the star image. The numbers respectively represent the number of each star in the star image.</p>
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<p>The histogram regarding gray values and magnitude values. The asterisks represent the gray values corresponding to the magnitude values. The red dashed line represents the variation trend of the gray value when the magnitude value increases. With the increasing magnitude value, the disorder of the gray value indicates the presence of a magnitude error in the captured star image.</p>
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51 pages, 15203 KiB  
Review
High-Contrast Imaging: Hide and Seek with Exoplanets
by Riccardo Claudi and Dino Mesa
Galaxies 2025, 13(1), 3; https://doi.org/10.3390/galaxies13010003 - 31 Dec 2024
Viewed by 343
Abstract
So far, most of the about 5700 exoplanets have been discovered mainly with radial velocity and transit methods. These techniques are sensitive to planets in close orbits, not being able to probearge star–planet separations. μ-lensing is the indirect method that allows us [...] Read more.
So far, most of the about 5700 exoplanets have been discovered mainly with radial velocity and transit methods. These techniques are sensitive to planets in close orbits, not being able to probearge star–planet separations. μ-lensing is the indirect method that allows us to probe the planetary systems at the snow-line and beyond, but it is not a repeatable observation. On the contrary, direct imaging (DI) allows for the detection and characterization ofow mass companions at wide separation (≤5–6 au). The main challenge of DI is that a typical planet–star contrast ranges from 10−6, for a young Jupiter in emittedight, to 10−9 for Earth in reflectedight. In theast two decades, aot of efforts have been dedicated to combiningarge (D ≥ 5 m) telescopes (to reduce the impact of diffraction) with coronagraphs and high-order adaptive optics (to correct phase errors induced by atmospheric turbulence), with sophisticated image post-processing, to reach such a contrast between the star and the planet in order to detect and characterize cooler and closer companions to nearby stars. Building on the first pioneering instrumentation, the second generation of high-contrast imagers, SPHERE, GPI, and SCExAO, allowed us to probe hundreds of stars (e.g., 500–600 stars using SHINE and GPIES), contributing to a better understanding of the demography and the occurrence of planetary systems. The DI offers a possible clear vision for studying the formation and physical properties of gas giant planets and brown dwarfs, and the future DI (space and ground-based) instruments with deeper detectionimits will enhance this vision. In this paper, we briefly review the methods, the instruments, the main sample of targeted stars, the remarkable results, and the perspective of this rising technique. Full article
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<p>The distribution of the masses of exoplanets discovered so far as a function of the orbital separation. The different colors identify the different methods by which the planets have been discovered. The planets of the Solar Systems are also reported. Data are from <a href="http://exoplanet.eu/" target="_blank">http://exoplanet.eu/</a>, accessed on 31 August 2024.</p>
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<p>HST and Palomar images of the Gliese 229 system. The M-dwarf, and T-dwarf pair has been discovered with coronagraphy. Gliese 229 B is at a projected distance &gt; 7 arcsec from its host star, and theuminosity contrast between the two objects is about <math display="inline"><semantics> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>4</mn> </mrow> </msup> </semantics></math> in the optical and NIR. This is just an example of the potentiality of DI observations. Both theimited projected separation and the high contrast made the star overcome theight of the companion; see the 1 au and 5 au orbits inside the glare of the star. <b>Left</b>: the Gliese 229 system observed with the HST. <b>Right—up</b>: the Gliese 229 system observed with Palomar. <b>Right—down</b>: the Gliese 229 B spectrum. The Picture was taken by Oppenheimer and Hinkley [<a href="#B26-galaxies-13-00003" class="html-bibr">26</a>].</p>
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<p>Theoretical models for theuminosity evolution of different structures with different masses versus age. The stars are shown in (continuous ine), while sub-stellar structures with M &gt; 13 <math display="inline"><semantics> <msub> <mi mathvariant="normal">M</mi> <mi mathvariant="normal">J</mi> </msub> </semantics></math> are in (dashedline), and giant planets are in (dottedline). The masses of the structures areabeled in Jupiter mass units. Young planets are brighter by more than three orders of magnitude than old planets. The data are taken by Burrows et al. [<a href="#B41-galaxies-13-00003" class="html-bibr">41</a>].</p>
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<p>Image taken with a coronagraph showing the presence of speckles.</p>
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<p>First image of the AO prototype ‘COME–ON’ system taken at 1.52 m telescope of the Observatoire de Haute Provence. <math display="inline"><semantics> <msub> <mi>γ</mi> <mn>2</mn> </msub> </semantics></math> And (a binary star with a 0.5″ separation) was observed in <span class="html-italic">K</span> band [<a href="#B50-galaxies-13-00003" class="html-bibr">50</a>].</p>
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<p>The principle of an Adaptive Optics System. The inserted images represent the different status of the wavefront: before the closure (perturbed wavefront) and after the closure of the AO controloop (corrected wavefront).</p>
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<p>Coronagraphy principle and Fourier Optics.The optical scheme of a classical Lyot coronagraph (left panel). Theight coming from the star (yellow, on-axis) and from the planet (light-green, off axis) are shown. On the right, the positions and electric field or stop profiles of the following: (<b>a</b>) Primary pupil for on-axis source ; (<b>b</b>) Image before image plane stop; (<b>c</b>) Image plane stop; (<b>d</b>) Image after image plane stop; (<b>e</b>) Pupil before Lyot stop; (<b>f</b>) Lyot stop; (<b>g</b>) Pupil after Lyot stop; (<b>h</b>) Final on-axis image (right panel). Modified from [<a href="#B62-galaxies-13-00003" class="html-bibr">62</a>].</p>
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<p>Examples of phase focal mask for phase-based Lyot coronagraphs. Left: the 4QPM phase mask of SPHERE (described in [<a href="#B66-galaxies-13-00003" class="html-bibr">66</a>]). Right: the Annular Groove Phase Mask (AGPM) mounted on NACO at VLT. (<b>a</b>) Schematic view of the AGPM, (<b>b</b>) zoom of the central part of the AGPM, (<b>c</b>) overview of the structure of the device (for details see [<a href="#B68-galaxies-13-00003" class="html-bibr">68</a>]).</p>
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<p>Graphical representation of the angular differential imaging method. The red dot indicates the position of a possible planet. The figure is taken from <a href="http://web.archive.org/web/20150915005746" target="_blank">http://web.archive.org/web/20150915005746</a>/<a href="http://www.mpia.de/homes/thalmann/adi.htm" target="_blank">http://www.mpia.de/homes/thalmann/adi.htm</a> (accessed on 31 August 2024) by Thalmann.</p>
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<p>Graphical representation of the spectral differential imaging method. The red dot indicates the position of a possible planet. Figure is taken from (Figure 1 Kiefer et al. [<a href="#B69-galaxies-13-00003" class="html-bibr">69</a>]).</p>
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<p>The <math display="inline"><semantics> <mrow> <mn>5</mn> <mspace width="4pt"/> <mi>σ</mi> </mrow> </semantics></math> post-processed contrast curves of several both ground- and space-based high-contrast imagers. Code and data source by V. Bailey and S. Hildebrandt Rafels (<a href="https://github.com/nasavbailey/DI-flux-ratio-plot" target="_blank">https://github.com/nasavbailey/DI-flux-ratio-plot</a>, accessed on 30 September 2024).</p>
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<p>Discovering images of all the planets described in the <a href="#sec6-galaxies-13-00003" class="html-sec">Section 6</a> and the reference of each discovery paper. Starting fromeft top to bottom right, there is the following: GQ Lup [<a href="#B196-galaxies-13-00003" class="html-bibr">196</a>]; AB Pic A b [<a href="#B174-galaxies-13-00003" class="html-bibr">174</a>]; HR 8799 b,c,d,e [<a href="#B175-galaxies-13-00003" class="html-bibr">175</a>]; <math display="inline"><semantics> <mi>β</mi> </semantics></math> Pic b [<a href="#B176-galaxies-13-00003" class="html-bibr">176</a>]; Ross 458 (AB) b (VLA-C band images [<a href="#B201-galaxies-13-00003" class="html-bibr">201</a>]); LkCa 15 b [<a href="#B181-galaxies-13-00003" class="html-bibr">181</a>]; 51 Eri b [<a href="#B14-galaxies-13-00003" class="html-bibr">14</a>]; 2MJ2126 [<a href="#B184-galaxies-13-00003" class="html-bibr">184</a>]; HIP 66426 [<a href="#B185-galaxies-13-00003" class="html-bibr">185</a>]; PDS 70 [<a href="#B202-galaxies-13-00003" class="html-bibr">202</a>]; HIP 99770 b [<a href="#B190-galaxies-13-00003" class="html-bibr">190</a>]; AF Lep b [<a href="#B191-galaxies-13-00003" class="html-bibr">191</a>,<a href="#B192-galaxies-13-00003" class="html-bibr">192</a>,<a href="#B193-galaxies-13-00003" class="html-bibr">193</a>]; <math display="inline"><semantics> <mi>ϵ</mi> </semantics></math> Ind b [<a href="#B194-galaxies-13-00003" class="html-bibr">194</a>].</p>
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19 pages, 5844 KiB  
Article
The Detection of an Inter-Turn Short-Circuit Fault in a Brushless Permanent Magnet Motor with Different Winding Configurations
by Mariusz Korkosz, Jan Prokop and Karol Ryłło
Energies 2024, 17(24), 6379; https://doi.org/10.3390/en17246379 - 18 Dec 2024
Viewed by 386
Abstract
This article is about the detection of a partial inter-turn short-circuit fault in a brushless motor with permanent magnets (BLPMM). The detection of a single inter-turn short circuit is a difficult issue. The authors of this article tested the sensitivity of the tested [...] Read more.
This article is about the detection of a partial inter-turn short-circuit fault in a brushless motor with permanent magnets (BLPMM). The detection of a single inter-turn short circuit is a difficult issue. The authors of this article tested the sensitivity of the tested powertrain damage detection method. The diagnostic method developed for BLPMM allows for any configuration of the motor winding. A number of analysed configurations have been applied for the combined star–delta connection (YΔ). For the combined star–delta connection Y/Δ, the problem of partial short circuit at two locations was analysed. In the first case, this was the short-circuit winding phenomena in the star part (SC1). In the second case, the short circuit was connected in part to the delta (SC2). A mathematical model has been developed that takes into account both the type of connection and the chance of a partial short circuit of the coil. Based on numerical calculations, the sensitivity of diagnostic methods is designated for both cases. Furthermore, the impact of partial short circuits on motor performance was also examined. The effect of a partial inter-turn short-circuit fault on motor parameters was also determined. Laboratory verification was carried out. Full article
(This article belongs to the Special Issue Reliability and Condition Monitoring of Electric Motors and Drives)
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<p>View (<b>a</b>) hybrid drive and (<b>b</b>) cross-section of BLPMM.</p>
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<p>Scheme (<b>a</b>) power converter, (<b>b</b>) winding connections.</p>
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<p>Flowchart of the proposed monitoring and diagnostic method.</p>
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<p>Laboratory test rig.</p>
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<p>RMS SC current vs. speed.</p>
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<p>SC current waveform: (<b>a</b>) stage of SC1, (<b>b</b>) stage of SC2.</p>
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<p>RMS SC current vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>RMS current vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>: (<b>a</b>) stage of SC1, (<b>b</b>) stage of SC2.</p>
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<p>Electromagnetic torque <span class="html-italic">T</span><sub>eav</sub> vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>RMS of diagnostic signal <span class="html-italic">u</span><sub>0</sub> vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>Magnitude of diagnostic signal vs. number of shorted turns: (<b>a</b>) stage of SC1, (<b>b</b>) stage of SC2.</p>
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<p>Percentage of the magnitude <span class="html-italic">f</span><sub>1</sub>/<span class="html-italic">f</span><sub>3</sub> vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>Harmonic amplitudes <span class="html-italic">f</span><sub>1</sub> and <span class="html-italic">f</span><sub>3</sub> vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>The difference in amplitude <span class="html-italic">f</span><sub>1</sub> and <span class="html-italic">f</span><sub>3</sub> vs. number of shorted turns <span class="html-italic">N</span><sub>sc</sub>.</p>
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<p>Current waveforms—SYM laboratory test.</p>
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<p>Current waveforms—SC1 laboratory test.</p>
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<p>Current waveforms—SC2 laboratory test.</p>
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<p>FFT of diagnostic signal: (<b>a</b>) linear scale, (<b>b</b>) decibel scale.</p>
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13 pages, 951 KiB  
Article
Reliability of the Star Excursion Balance Test with End-Stage Knee Osteoarthritis Patients and Its Responsiveness Following Total Knee Arthroplasty
by Bodor Bin Sheeha, Ahmad Bin Nasser, Anita Williams, Malcolm Granat, David Sands Johnson, Omar W. Althomali, Nouf H. Alkhamees, Zizi M. Ibrahim and Richard Jones
J. Clin. Med. 2024, 13(21), 6479; https://doi.org/10.3390/jcm13216479 - 29 Oct 2024
Viewed by 808
Abstract
Background/Objectives: The Star Excursion Balance Test (SEBT) is a simple and feasible tool for assessing dynamic balance in individuals with knee osteoarthritis (KOA). It has an advantage as it replicates dynamic balance better than other static balance tools. This study aims to determine [...] Read more.
Background/Objectives: The Star Excursion Balance Test (SEBT) is a simple and feasible tool for assessing dynamic balance in individuals with knee osteoarthritis (KOA). It has an advantage as it replicates dynamic balance better than other static balance tools. This study aims to determine how reliable SEBT is among people with end-stage KOA, as well as how responsive it is and how well it correlates with performance-based outcome measures after TKA. Methods: Patients on the waiting list for TKA performed SEBT in the anterior, posteromedial and posteriorlateral directions twice within 7 days. The measurements were repeated 6 and 12 months after TKA. The participants completed performance-based outcome measurements (PBOMs) and the Oxford Knee Score (OKS) before and after TKA to estimate correlation. Results: In all directions, the intraclass correlation coefficient range (ICC) was 0.998–0.993, and there were no significant differences between the test and re-test mean SEBT scores. The standard error of measurement (SEM) ranged from 0.37% to 0.68%, and the minimum detectable change (MDC) ranged from 1.02% to 1.89%. The post TKA SEBT results show significant improvement, with a large effect size. There were large-to-medium correlations between SEBT and PBOMs before and after TKA, while OKS correlated only before surgery. The magnitude of change in SEBT, PBOMs and OKS did not correlate. Conclusions: SEBT is an extremely reliable tool for assessing dynamic balance in all three directions of severe KOA patients. It is sensitive enough to detect balance changes at 6 and 12 months post TKA. SEBT cannot be used to reflect the change in functional outcome improvement after TKA. Full article
(This article belongs to the Special Issue Knee Osteoarthritis: Clinical Updates and Perspectives)
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<p>Bland-Altman plot showing the reliability of anterior direction SEBT.</p>
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<p>Bland–Altman plot showing the reliability of posterolateral direction SEBT.</p>
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<p>Bland–Altman plot showing the reliability of posteromedial direction SEBT.</p>
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23 pages, 36167 KiB  
Article
Vibro-Acoustic Signatures of Various Insects in Stored Products
by Daniel Kadyrov, Alexander Sutin, Nikolay Sedunov, Alexander Sedunov and Hady Salloum
Sensors 2024, 24(20), 6736; https://doi.org/10.3390/s24206736 - 19 Oct 2024
Viewed by 3752
Abstract
Stored products, such as grains and processed foods, are susceptible to infestation by various insects. The early detection of insects in the supply chain is crucial, as introducing invasive pests to new environments may cause disproportionate harm. The STAR Center at Stevens Institute [...] Read more.
Stored products, such as grains and processed foods, are susceptible to infestation by various insects. The early detection of insects in the supply chain is crucial, as introducing invasive pests to new environments may cause disproportionate harm. The STAR Center at Stevens Institute of Technology developed the Acoustic Stored Product Insect Detection System (A-SPIDS) to detect pests in stored products. The system, which comprises a sound-insulated container for product samples with a built-in internal array of piezoelectric sensors and additional electret microphones to record outside noise, was used to conduct numerous measurements of the vibroacoustic signatures of various insects, including the Callosobruchus maculatus, Tribolium confusum, and Tenebrio molitor, in different materials. A normalization method was implemented using the ambient noise of the sensors as a reference, to accommodate for the proprietary, non-calibrated sensors and allowing to set relative detection thresholds for unknown sensitivities. The normalized envelope of the filtered signals was used to characterize and compare the insect signals by estimating the Normalized Signal Pulse Amplitude (NSPA) and the Normalized Spectral Energy Level (NSEL). These parameters characterize the insect detection Signal Noise Ratio (SNR) for pulse-based detection (NSPA) and averaged energy-based detection (NSEL). These metrics provided an initial step towards the design of a reliable detection algorithm. In the conducted tests NSPA was significantly larger than NSEL. The NSPA reached 70 dB for T. molitor in corn flakes. The insect signals were lower in flour where the averaged NSPA and NSEL values were around 40 dB and 11 dB to 16 dB, respectively. Full article
(This article belongs to the Special Issue Advanced Acoustic Sensing Technology)
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<p>Acoustic Stored Product Insect Detection System with section view of internal container, sensors, and electronics.</p>
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<p>Diagram of the A-SPIDS system channel layout.</p>
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<p>Diagram of system electronics.</p>
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<p>Spectra of external microphones while playing simulated external noise at 80 <math display="inline"><semantics> <mi mathvariant="normal">d</mi> </semantics></math><math display="inline"><semantics> <mi mathvariant="normal">B</mi> </semantics></math>A.</p>
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<p>Spectrograms of high strength (<b>a</b>), medium strength (<b>b</b>), and low strength (<b>c</b>) signals. (<b>a</b>) High strength signal—<span class="html-italic">Tenebrio molitor</span> in rice, (<b>b</b>) Medium strength signal—<span class="html-italic">Callosobruchus maculatus</span> in oatmeal, (<b>c</b>) Low strength signal—<span class="html-italic">Tribolium confusum</span> in flour.</p>
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<p>Spectra of the example insect–material pairings. (<b>a</b>) Spectra for four piezoelectric sensors of high strength signal—<span class="html-italic">Callosobruchus maculatus</span> in oatmeal, (<b>b</b>) Low strength signal—<span class="html-italic">Tribolium confusum</span> in flour.</p>
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<p>The differences between insect signal spectra and the reference noise, signal-to-noise ratio (SNR), of the example insect–material pairings.</p>
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<p>Filtered waveform of <span class="html-italic">Callosobruchus maculatus</span> in oatmeal.</p>
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<p>Diagram of the signal normalization process.</p>
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<p>Normalized envelopes of the insect signals in different materials. (<b>a</b>) High strength signal—<span class="html-italic">Tenebrio molitor</span> in rice, (<b>b</b>) Medium strength signal—<span class="html-italic">Callosobruchus maculatus</span> in oatmeal, (<b>c</b>) Low strength signal—<span class="html-italic">Tribolium confusum</span> in flour.</p>
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<p>NSPA (<b>a</b>) and NSEL (<b>b</b>) for the different insect and material pairings. (<b>a</b>) Normalized Strong Pulse Amplitude (NSPA), (<b>b</b>) Normalized Signal Energy Level (NSEL).</p>
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<p>Spectra of <span class="html-italic">Tenebrio molitor</span> larvae in wheat groats comparing self-noise and median reference methods.</p>
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<p>Spectrogram of <span class="html-italic">Sitophilus oryzae</span> larvae in wheat groats recorded by the piezoelectric sensor from the BugBytes dataset.</p>
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<p>Spectra of <span class="html-italic">Sitophilus oryzae</span> larvae in wheat groats recorded by the piezoelectric sensor from the BugBytes dataset.</p>
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<p>Normalized filtered envelope of <span class="html-italic">Sitophilus oryzae</span> larvae in wheat groats recorded by the piezoelectric sensor from the BugBytes dataset.</p>
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10 pages, 2012 KiB  
Article
M 1-92: The Death of an AGB Star Told by Its Isotopic Ratios
by Elisa Masa, Javier Alcolea, Miguel Santander-García, Valentín Bujarrabal, Carmen Sánchez Contreras and Arancha Castro-Carrizo
Galaxies 2024, 12(5), 63; https://doi.org/10.3390/galaxies12050063 - 10 Oct 2024
Cited by 1 | Viewed by 607
Abstract
Ongoing improvements in the sensitivity of sub-mm- and mm-range interferometers and single-dish radio telescopes allow for the increasingly detailed study of AGB and post-AGB objects in molecular species other than CO12 and CO13. With a new update introduced in the [...] Read more.
Ongoing improvements in the sensitivity of sub-mm- and mm-range interferometers and single-dish radio telescopes allow for the increasingly detailed study of AGB and post-AGB objects in molecular species other than CO12 and CO13. With a new update introduced in the modelling tool SHAPE + shapemol, we can now create morpho-kinematical models to reproduce observations of these AGB and post-AGB circumstellar shells in different molecular species, allowing for an accurate description of their physical features as well as their molecular abundances and isotopic ratios. The pre-planetary nebula M1-92 (Minkowski’s Footprint) is one of the most complex objects of this kind, with a wide range of physical conditions and more than 20 molecular species detected. We model this nebula, reproducing the observational data from IRAM-30m and HSO/HiFi spectra and NOEMA interferometric maps, trying to understand the unusual evolution of its central star in the last phases of its life. The results show interesting features that tell us the story of its death. According to standard evolution models, a O17/O18 isotopic ratio of 1.6 implies a stellar initial mass of ∼1.7M. Such a star should have turned C-rich by the end of the AGB phase, in striking contrast to the O-rich nature of the nebula. The most plausible way of reconciling this discrepancy is that M1-92 resulted from a sudden massive ejection event, interrupting the AGB evolution of the central source and preventing its transformation into a C-rich star. We also detect a changing C12/C13 ratio across the nebula, which is particularly relevant in the inner equatorial region traced by HCO+ and H13CO+, indicating an isotopic ratio variation taking place at some point during the last 1200 yr. Full article
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<p>Wired representation of the best-fit model based on available data of the molecular envelope of the pPN M1-92 showing its structures, together with a scale to show the distance of <math display="inline"><semantics> <msup> <mn>1</mn> <mrow> <mo>″</mo> </mrow> </msup> </semantics></math> (equivalent to 3.75 × <math display="inline"><semantics> <msup> <mn>10</mn> <mn>16</mn> </msup> </semantics></math> cm at the nebula’s location). 1: (Yellow) Outer layer of the tips structure, continuation of the main shell (6) with very similar conditions. 2: (Yellow) Inner layer of the tips, with hotter gas. 3: (Red) Equatorial structure with high density, defining the lobes’ base. 4: (Purple) Ring around the central cylinder with the same physical properties as the main shell. 5: (Bright yellow) Knots inside the empty lobes where ionised gas has been found. 6: (Green) The main shell, which forms the walls of the empty lobes and mainly consists of cold gas.</p>
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<p>P-V diagrams along the nebular main symmetry axis for <sup>13</sup>CO maps <span class="html-italic">J</span> = 2 − 1 transition. Observational data is shown on the left, model reproduction on the central panel and residuals (observation-model) on the right.</p>
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<p>Line profiles of <sup>12</sup>CO. Observational data in black and model reproduction in green. All plots show main beam temperature (K) vs. LSR velocity (km s<sup>−1</sup>).</p>
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<p>P-V diagrams along the nebular main symmetry axis for <math display="inline"><semantics> <msup> <mi>HCO</mi> <mo>+</mo> </msup> </semantics></math> maps <span class="html-italic">J</span> = 2 − 1 transition. Observational data is shown on the left, model reproduction on the central panel and residuals (observation-model) on the right.</p>
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<p>Line profiles of <math display="inline"><semantics> <msup> <mi>HCO</mi> <mo>+</mo> </msup> </semantics></math> and H<sup>13</sup>CO<sup>+</sup>. Observational data in black and model reproduction in green. All plots show temperature of main beam (K) vs. velocity (km s<sup>−1</sup>).</p>
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10 pages, 548 KiB  
Article
Diagnostic Accuracy of Five Molecular Assays for the Detection of Dengue Virus
by Marianna Scarpaleggia, Giada Garzillo, Miriana Lucente, Chiara Fraccalvieri, Nadia Randazzo, Elvira Massaro, Barbara Galano, Valentina Ricucci, Bianca Bruzzone and Alexander Domnich
Medicina 2024, 60(9), 1557; https://doi.org/10.3390/medicina60091557 - 23 Sep 2024
Viewed by 1342
Abstract
Background and Objectives: The steady spread of dengue virus (DENV) poses a profound public health threat worldwide. Reverse transcription real-time polymerase chain reaction (RT2-PCR) has been increasingly recognized as a reference method for the diagnosis of acute dengue infection. The goal of [...] Read more.
Background and Objectives: The steady spread of dengue virus (DENV) poses a profound public health threat worldwide. Reverse transcription real-time polymerase chain reaction (RT2-PCR) has been increasingly recognized as a reference method for the diagnosis of acute dengue infection. The goal of this study was to assess the diagnostic accuracy of five different RT2-PCR kits for the detection of DENV in a historically processed set of sera samples. Materials and Methods: In this retrospective study, 25 sera samples from routinely processed unique adult patients with a known DENV status (previously tested in both molecular and serological assays) were tested in parallel using four conventional (RealStar Dengue PCR Kit 3.0, Clonit’ngo Zika, Dengue & Chikungunya, BioPerfectus Zika Virus/Dengue Virus/Chikungunya Virus Real Time PCR Kit and Novaplex Tropical fever virus) and one sample-to-result (STANDARD M10 Arbovirus Panel) RT2-PCR assays. Additionally, an end-point dilution analysis was conducted in quintuplicate on six serial dilutions of an RNA preparation obtained from a culture-grown DENV serotype 1 strain for a total of 150 tests. Results: The overall accuracy of the evaluated tests ranged from 84% to 100%. In particular, the sensitivity of three conventional RT2-PCR assays (RealStar, Clonit’ngo and Novaplex) was 100% (95% CI: 79.6–100%), while it was lower (73.3%; 95% CI: 48.1–89.1%) for the BioPerfectus kit. The sample-to-result STANDARD M10 panel performed comparatively well, showing a sensitivity of 92.9% (95% CI: 68.5–98.7%). No false positive results were registered in any assay. The end-point dilution analysis suggested that the RealStar kit had the lowest limit of detection. Conclusions: Available RT2-PCR kits for the detection of DENV are highly specific and generally sensitive and, therefore, their implementation in diagnostic pathways is advisable. Full article
(This article belongs to the Section Infectious Disease)
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<p>Distributions of cycle threshold (Ct) values, by assay. * <span class="html-italic">p</span> &lt; 0.05; *** <span class="html-italic">p</span> &lt; 0.001. All <span class="html-italic">p</span>-values are adjusted for multiple comparisons.</p>
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12 pages, 768 KiB  
Article
PCR Detection of Bartonella spp. and Borreliella spp. DNA in Dry Blood Spot Samples from Human Patients
by Kerry L. Clark and Shirley Hartman
Pathogens 2024, 13(9), 727; https://doi.org/10.3390/pathogens13090727 - 28 Aug 2024
Viewed by 3934
Abstract
Lyme disease is the most commonly reported vector-borne disease in the United States. Bartonella constitute an additional zoonotic pathogen whose public health impact and diversity continue to emerge. Rapid, sensitive, and specific detection of these and other vector-borne pathogens remains challenging, especially for [...] Read more.
Lyme disease is the most commonly reported vector-borne disease in the United States. Bartonella constitute an additional zoonotic pathogen whose public health impact and diversity continue to emerge. Rapid, sensitive, and specific detection of these and other vector-borne pathogens remains challenging, especially for patients with persistent infections. This report describes an approach for DNA extraction and PCR testing for the detection of Bartonella spp. and Borreliella spp. from dry blood spot (DBS) specimens from human patients. The present study included extraction of DNA and PCR testing of DBS samples from 105 patients with poorly defined, chronic symptoms labeled as Lyme-Like Syndromic Illness (LLSI). Bartonella spp. DNA was detected in 20/105 (19%) and Borreliella spp. DNA was detected in 41/105 (39%) patients with LLSI. Neither group of organisms was detected in DBS samples from 42 healthy control subjects. Bartonella spp. 16S–23S rRNA internal transcribed spacer sequences were highly similar to ones previously identified in yellow flies, lone star ticks, a human patient from Florida, mosquitoes in Europe, or B. apihabitans and choladocola strains from honeybees. These human strains may represent new genetic strains or groups of human pathogenic species of Bartonella. The 41 Borreliella spp. flaB gene sequences obtained from human patients suggested the presence of four different species, including B. burgdorferi, B. americana, B. andersonii, and B. bissettiae/carolinensis-like strains. These results suggest that specific aspects of the DBS DNA extraction and PCR approach enabled the detection of Bartonella spp. and Borreliella spp. DNA from very small amounts of human whole blood from some patients, including specimens stored on filter paper for 17 years. Full article
(This article belongs to the Special Issue The Expanding Clinical Spectrum of Bartonelloses)
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<p>Evolutionary analysis by the maximum likelihood method. The evolutionary history was inferred by using the maximum likelihood method and Jukes–Cantor model [<a href="#B31-pathogens-13-00727" class="html-bibr">31</a>]. The bootstrap consensus tree inferred from 1000 replicates [<a href="#B32-pathogens-13-00727" class="html-bibr">32</a>] is taken to represent the evolutionary history of the taxa analyzed. Branches corresponding to partitions reproduced in less than 50% bootstrap replicates are collapsed. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test are shown next to the branches [<a href="#B32-pathogens-13-00727" class="html-bibr">32</a>]. Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Jukes–Cantor model, and then selecting the topology with superior log likelihood value. The rate variation model allowed for some sites to be evolutionarily invariable ([+<span class="html-italic">I</span>], 53.39% sites). This analysis involved 26 nucleotide sequences. All positions with less than 95% site coverage were eliminated, i.e., fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position (partial deletion option). There was a total of 254 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [<a href="#B30-pathogens-13-00727" class="html-bibr">30</a>]. <span class="html-italic">Bartonella</span> ITS sequences derived from human patients in this study are denoted with black circles.</p>
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17 pages, 329 KiB  
Article
Comprehensive Screening of Salinomycin in Feed and Its Residues in Poultry Tissues Using Microbial Inhibition Tests Coupled to Enzyme-Linked Immunosorbent Assay (ELISA)
by Daniela Spišáková, Ivona Kožárová, Simona Hriciková and Slavomír Marcinčák
Foods 2024, 13(11), 1661; https://doi.org/10.3390/foods13111661 - 25 May 2024
Cited by 1 | Viewed by 1453
Abstract
Salinomycin is a coccidiostat approved as a feed additive for the prevention of coccidiosis in poultry. Official control of its residues is set by the Commission Delegated Regulation (EU) 2022/1644. The aim of our study was to assess the suitability of three microbial [...] Read more.
Salinomycin is a coccidiostat approved as a feed additive for the prevention of coccidiosis in poultry. Official control of its residues is set by the Commission Delegated Regulation (EU) 2022/1644. The aim of our study was to assess the suitability of three microbial inhibition tests (MITs), Premi®Test, Explorer 2.0, and the Screening Test for Antibiotic Residues (STAR) linked to the enzyme-linked immunosorbent assay (ELISA), for the screening of salinomycin residues in the tissues of broiler chickens (breast and thigh muscle, heart, liver, gizzard, kidneys, lungs, spleen, skin, and fat) fed commercially produced feed containing 70 mg.kg−1 of salinomycin in the complete feed. The first residue screening (Sampling A) was performed on the last day of administration of the salinomycin-medicated feed (day 30), and the second screening (Sampling B) was performed on the day of slaughter (day 37) after the expiry of the withdrawal period with the feeding of non-medicated feed. Based on the quantitative confirmation of salinomycin residues in the examined chicken tissues by the ELISA method (Sampling A from 0.025 to 0.241 mg.kg−1; Sampling B from 0.003 to 0.076 mg.kg−1), all the MITs with the preference of the bacterial strain Bacillus stearothermophilus var. calidolactis ATCC 10149 demonstrated the ability to detect the residues of salinomycin in the examined tissues of broiler chickens at the level of the maximum residue limits set from 0.015 to 0.150 mg.kg−1 by Commission Implementing Regulation (EU) 2017/1914 and confirmed the relevance of their sensitivity to the coccidiostat salinomycin. Full article
(This article belongs to the Section Food Analytical Methods)
11 pages, 872 KiB  
Article
Teaming up Radio and Sub-mm/FIR Observations to Probe Dusty Star-Forming Galaxies
by Meriem Behiri, Marika Giulietti, Vincenzo Galluzzi, Andrea Lapi, Elisabetta Liuzzo and Marcella Massardi
Galaxies 2024, 12(2), 14; https://doi.org/10.3390/galaxies12020014 - 29 Mar 2024
Viewed by 1309
Abstract
In this paper, we investigate the benefits of teaming up data from the radio to the far-infrared (FIR) regime for the characterization of dusty star-forming galaxies (DSFGs). These galaxies are thought to be the star-forming progenitors of local massive quiescent galaxies and to [...] Read more.
In this paper, we investigate the benefits of teaming up data from the radio to the far-infrared (FIR) regime for the characterization of dusty star-forming galaxies (DSFGs). These galaxies are thought to be the star-forming progenitors of local massive quiescent galaxies and to play a pivotal role in the reconstruction of the cosmic star formation rate density up to high redshift. Due to their dust-enshrouded nature, DSFGs are often invisible in the near-infrared/optical/UV bands. Therefore, they necessitate observations at longer wavelengths, primarily the FIR band, where dust emission occurs, and the radio band, which is not affected by dust absorption. Combining data from these two spectral windows makes it possible to characterize even the dustiest objects, enabling the retrieval of information about their age, dust temperature, and star-formation status, and facilitates the differentiation between various galaxy populations that evolve throughout cosmic history. Despite the detection of faint radio sources being a challenging task, this study demonstrates that an effective strategy to build statistically relevant samples of DSFGs would be reaching deep sensitivities in the radio band, even restricted to smaller areas, and then combining these radio observations with FIR/submm data. Additionally, this paper quantifies the improvement in the spectral energy distribution (SED) reconstruction of DSFGs by incorporating ALMA band measurements, in particular, in its upgraded status thanks to the anticipated Wideband Sensitivity Upgrade. Full article
(This article belongs to the Special Issue The Observation and Detection of Dusty Star-Forming Galaxies)
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<p>ATCA observing time estimated at 2.1 GHz requested to reach the values of flux density (displayed by the x-axis) over a given sky area (coloured scale). The estimate does not consider overhead time. For comparison, we also reported the time needed to perform a survey of 10,000 (black solid line), 1000 (black dashed line), or 100 (black dotted line) sources to observe 10,000, 1000, and 100 SFGs (green lines) or 100, 10, or 1 SFGs at redshift z &gt; 3 (red lines). Three examples of surveys have been identified: (white square) a survey of 1 sqdeg down to a flux density limit of 0.0 mJy (at 5<span class="html-italic">σ</span> confidence level), (white star) a survey of 10 sqdeg down to a flux density limit of 0.05 mJy (5<span class="html-italic">σ</span>), and (white circle) a survey of 10 sqdeg down to a flux density limit of 0.25 mJy (5<span class="html-italic">σ</span>). No bias corrections have been introduced in the estimate of the source numbers.</p>
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<p>Number of sources expected with the ATCA at 2.1 GHz at the flux density (on the x-axis) in a given area (coloured scales) for the case of the total number of sources, the SFG only, and the DSFG at z &gt; 3. The example cases are the same as in <a href="#galaxies-12-00014-f001" class="html-fig">Figure 1</a>. No bias corrections have been introduced in the estimate of the source numbers.</p>
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<p>MCMC simulation of the best (solid green line) and 1-sigma confidence intervals (green shaded area) of possible fitting SED solutions for a representative source in our sample in the log frequency range 9–15 Hz corresponding to wavelengths between 5.5 and 1.5 μm. The top left panel shows the situation without any ALMA observations. The top right and bottom left panels show the improvement in the SED definition (i.e., a thinner green region) obtained by adding only B1 or B6 ALMA, respectively, considering noise of 20 μJy and 40 μJy in B1 and B6, respectively, attainable in less than 10 min on source with the current ALMA array. Finally, the bottom right panel shows the case of the combination of existing ATCA and H-ATLAS data with ALMA B1 and B6 measurements with less than 10 min on source at each band. To demonstrate how the best-fitting solution varies, dashed lines show the best-fitting synchrotron (blue), free-free (red), and dust emission (yellow).</p>
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<p>(<b>Left panel</b>) Comparison of the 1<span class="html-italic">σ</span> confidence levels from global SED fitting in case of no ALMA data (green shaded area) and three cases of B1 observations: a non-detection (upper limit at 150 μJy in the example, orange), a detection at 3<span class="html-italic">σ</span> significance (150 ± 50 μJy, red), and a strong detection above 5<span class="html-italic">σ</span> significance (maroon) for the same source used as an example in <a href="#galaxies-12-00014-f003" class="html-fig">Figure 3</a>. As a reference, a 10 min observation in B1 with ALMA results in a noise level of ∼20 μJy. By using the same colour code, we also display how the best fitting for synchrotron (dotted lines), free-free (dashed lines), and dust (solid lines) emissions changes. We note that even non-detections provide precious indications, in particular for free-free and synchrotron components (as only the B1 is varying in this example), hence improving the global SED definition. (<b>Right panel</b>) The same as in the left panel, but varying the noise of the B6 detection: a 10 min observation in B6 with ALMA results in a noise level of ∼40 μJy.</p>
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<p>Distribution of the relative error in the parameter estimations for the synchrotron spectral index, redshift, and dust temperature without (green) and with (maroon) the estimated ALMA data for the 60 sources in our sample: the medians of the distributions (dashed lines) in all the cases are considerably lower if ALMA data are included in the SEDs. Clearly, in most cases, the synchrotron spectral index cannot be defined without an ALMA B1 point, giving an unrealistically narrow distribution, making any significance test unreliable.</p>
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10 pages, 439 KiB  
Article
Molecular Diagnosis of Human Monkeypox Virus during 2022–23 Outbreak: Preliminary Evaluation of Novel Real-Time Qualitative PCR Assays
by Vanessa De Pace, Bianca Bruzzone, Valentina Ricucci, Alexander Domnich, Giulia Guarona, Giada Garzillo, Rexhina Qosja, Giulia Ciccarese, Antonio Di Biagio, Andrea Orsi and Giancarlo Icardi
Microorganisms 2024, 12(4), 664; https://doi.org/10.3390/microorganisms12040664 - 27 Mar 2024
Cited by 3 | Viewed by 1875
Abstract
In 2022–23, the human monkeypox virus (MPXV) caused a global outbreak in several non-endemic countries. Here, we evaluated the diagnostic performance of four real-time qualitative PCR assays for the laboratory diagnosis of mpox (monkeypox) monkeypox disease. From July to August 2022, 27 positive [...] Read more.
In 2022–23, the human monkeypox virus (MPXV) caused a global outbreak in several non-endemic countries. Here, we evaluated the diagnostic performance of four real-time qualitative PCR assays for the laboratory diagnosis of mpox (monkeypox) monkeypox disease. From July to August 2022, 27 positive and 10 negative specimens (lesion, crust and exudate swabs) were tested in the laboratory of the Hygiene Unit of the San Martino Hospital (Genoa, Italy) by using home-made real-time PCR to detect MPXV generic G2R_G DNA. According to the manufacturer’s instructions, we also retrospectively analyzed these specimens using RealCycler MONK-UX/-GX (Progenie Molecular), STANDARD M10 MPX/OPX (SD Biosensor), Novaplex MPXV (Seegene Inc.) and RealStar Orthopoxvirus PCR Kit 1.0 (Altona Diagnostics) assays, recognized as research-use-only tests. The diagnostic accuracy and sensitivity of these assays ranged from 97.3% (95% CI: 86.2–99.5%) to 100% (95% CI: 90.6–100%) and 96.3% (95% CI: 81.72–99.34%) to 100% (95% CI: 72.2–100%), respectively. The RealCycler MONK-UX and STANDARD M10 MPX/OPX did not detect one positive sample with a cycle threshold of 36. The overall specificity was 100% (95% CI: 72.2–100%), and Cohen’s Kappa values ranged from 1 (95% CI: 0.67–1) to 0.93 (95% CI: 0.61–1). As they are highly accurate, reliable and user-friendly, these tests should be recommended for the routine or rapid laboratory discrimination of mpox from other rash illnesses. Full article
(This article belongs to the Special Issue Diagnostics and Antivirals for Emerging Viruses)
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<p>MPXV molecular diagnostics: distribution of low and high cycle threshold using in-house and research-use-only PCR assays. (<b>A</b>) Ct for high viral load specimens. (<b>B</b>) Ct for low viral load specimens. Points refer to minor values with different interpretation from the reference molecular method. Abbreviations: In-house MPXV PCR Assay (In-house); Novaplex—MPXV Assay (Novaplex); STANDARD M10 MPX/OPX (STANDARD); RealCycler MONK-UX/-GX v.2 (RealCycler); RealStar Orthopoxvirus PCR Kit 1.0 (RealStar).</p>
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19 pages, 4857 KiB  
Article
Significance of Fabry-Perot Cavities for Space Gravitational Wave Antenna DECIGO
by Kenji Tsuji, Tomohiro Ishikawa, Kurumi Umemura, Yuki Kawasaki, Shoki Iwaguchi, Ryuma Shimizu, Masaki Ando and Seiji Kawamura
Galaxies 2024, 12(2), 13; https://doi.org/10.3390/galaxies12020013 - 15 Mar 2024
Cited by 1 | Viewed by 1583
Abstract
DECIGO is a future Japanese project for the detection of gravitational waves in space. To conduct various scientific missions, including the verification of cosmic inflation through the detection of primordial gravitational waves as the main objective, DECIGO is designed to have high sensitivity [...] Read more.
DECIGO is a future Japanese project for the detection of gravitational waves in space. To conduct various scientific missions, including the verification of cosmic inflation through the detection of primordial gravitational waves as the main objective, DECIGO is designed to have high sensitivity in the frequency band from 0.1 to 10 Hz, with arms of length 1000 km. Furthermore, the use of the Fabry-Perotcavity in these arms has been established for the DECIGO project. In this paper, we scrutinize the significance of the Fabry-Perot cavity for promoting this project, with a focus on the possibility of observing gravitational waves from cosmic inflation and binary compact star systems as indicators. The results show that using the Fabry-Perot cavity is extremely beneficial for detecting them, and it is anticipated to enable the opening of a new window in gravitational wave astronomy. Full article
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<p>Configuration of a single cluster in DECIGO [<a href="#B12-galaxies-12-00013" class="html-bibr">12</a>].</p>
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<p>Positions of each cluster in DECIGO. Two clusters placed at the same position are used for correlating detection. Three clusters located at different positions have an angle of 60 degrees to the others and are used for accurately determining the direction of gravitational waves. All clusters are in heliocentric orbits.</p>
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<p>Proposed orbit of each cluster. All clusters are in heliocentric orbits. Each cluster maintains an equilateral triangle configuration, and the period of rotation is one year. This triangle has an inclination of 60 degrees with respect to the plane of Earth’s orbit.</p>
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<p>Typical sensitivity curves of the detectors. The Michelson interferometer (MI) is represented by the blue lines, and the color becomes lighter as the arm length shortens. The differential Fabry-Perot interferometer (DFPI) is represented by the red lines, and the color becomes lighter as the effective finesse decreases. The arm length of DFPI is fixed at <math display="inline"><semantics> <mrow> <mn>1</mn> <mspace width="3.33333pt"/> <mo>×</mo> <mspace width="3.33333pt"/> <msup> <mn>10</mn> <mn>3</mn> </msup> </mrow> </semantics></math> km, which is the same as the default design of DECIGO. The dashed lines represent the standard quantum limit, as shown in Equation (<a href="#FD10-galaxies-12-00013" class="html-disp-formula">10</a>), and the sensitivity curves of MI are not tangent to these lines due to the factor described in <a href="#sec3dot1-galaxies-12-00013" class="html-sec">Section 3.1</a>.</p>
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<p>Comparison of detector sensitivities at an optimized SNR to detect primordial gravitational waves across different conditions. The sensitivity curves for various mirror radii are horizontally arranged, and those for different laser powers are vertically arranged, showing the optimized results for nine cases. The Michelson interferometer is represented by the blue lines, and the differential Fabry-Perot interferometer is represented by the red lines. These sensitivity curves follow Equation (<a href="#FD20-galaxies-12-00013" class="html-disp-formula">20</a>), with a three-year correlation. In addition, the power spectral density of primordial gravitational waves is represented by green lines, with an adopted energy density of <math display="inline"><semantics> <msub> <mo>Ω</mo> <mi>GW</mi> </msub> </semantics></math> equal to <math display="inline"><semantics> <mrow> <mn>1</mn> <mspace width="3.33333pt"/> <mo>×</mo> <mspace width="3.33333pt"/> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>16</mn> </mrow> </msup> </mrow> </semantics></math>.</p>
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<p>SNR of each detector to primordial gravitational waves, with an adopted energy density <math display="inline"><semantics> <msub> <mo>Ω</mo> <mi>gw</mi> </msub> </semantics></math> of <math display="inline"><semantics> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>16</mn> </mrow> </msup> </semantics></math> for arm lengths <span class="html-italic">L</span> when the mirror radius <span class="html-italic">R</span> is fixed at <math display="inline"><semantics> <mrow> <mn>0.5</mn> </mrow> </semantics></math> m. The period for taking correlations is also three years. The colors lighten as the laser power decreases in the sensitivity curve of each detector.</p>
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<p>Comparison of detector sensitivities at an optimized SNR for the detection of gravitational waves from binary star systems across different conditions. The sensitivity curves for various mirror radii are horizontally arranged, and those for different source masses are vertically arranged, showing the optimized results for nine cases. The differences in laser power are represented by the varying shades of color. The purple line represents <math display="inline"><semantics> <mrow> <msqrt> <msub> <mi>S</mi> <mi>h</mi> </msub> </msqrt> <mrow> <mo>(</mo> <mi>f</mi> <mo>)</mo> </mrow> </mrow> </semantics></math> for each mass condition at 100 Mpc from the detectors, which is equivalent to the strain sensitivity of the detector as indicated by Equation (<a href="#FD43-galaxies-12-00013" class="html-disp-formula">43</a>).</p>
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<p>SNR of each detector to gravitational waves from binary star systems for arm lengths <span class="html-italic">L</span> when mirror radius <span class="html-italic">R</span> is fixed at <math display="inline"><semantics> <mrow> <mn>0.5</mn> </mrow> </semantics></math> m. Here, the mass of the binary star systems is fixed at <math display="inline"><semantics> <mrow> <mn>100</mn> <msub> <mi>M</mi> <mo>⊙</mo> </msub> <mo>+</mo> <mn>100</mn> <msub> <mi>M</mi> <mo>⊙</mo> </msub> </mrow> </semantics></math>. The distance from the detector of the binary system is also set to 100 Mpc. The colors lighten as the laser power decreases in the sensitivity curve of each detector.</p>
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<p>Relationship between the total source mass and luminosity distance of observable binary systems for each detector at various SNRs. The parameters of the detector are set as <math display="inline"><semantics> <mrow> <mi>R</mi> <mo>=</mo> <mn>0.5</mn> </mrow> </semantics></math> m and <math display="inline"><semantics> <mrow> <mi>P</mi> <mo>=</mo> <mn>10</mn> </mrow> </semantics></math> W. The black line represents the observable limit where the redshifted merger frequency is equal to the cutoff frequency related to confusion limiting noise.</p>
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13 pages, 3100 KiB  
Article
Gold Nanoparticle-Loaded Porous Poly(ethylene glycol) Nanosheets for Electrochemical Detection of H2O2
by Zhiyong Zhao and Michael Zharnikov
Nanomaterials 2023, 13(24), 3137; https://doi.org/10.3390/nano13243137 - 14 Dec 2023
Cited by 1 | Viewed by 1198
Abstract
The effective detection of hydrogen peroxide (H2O2) in different environments and, above all, in biological media, is an important practical issue. To this end, we designed a novel electrochemical sensor for H2O2 detection by introducing gold [...] Read more.
The effective detection of hydrogen peroxide (H2O2) in different environments and, above all, in biological media, is an important practical issue. To this end, we designed a novel electrochemical sensor for H2O2 detection by introducing gold nanoparticles (AuNPs) into the porous poly(ethylene glycol) (PEG) matrix formed by the thermally activated crosslinking of amino- and epoxy-decorated STAR-PEG precursors. The respective composite PEG-AuNP films could be readily prepared on oxidized Si substrates, separated from them as free-standing nanosheets, and transferred as H2O2 sensing elements onto the working electrode of the electrochemical cell, with the performance of the sensing element relied on the established catalytic activity of AuNPs with respect to H2O2 decomposition. The sensitivity, detection limit, and the operation range of the composite PEG-AuNP sensors were estimated at ~3.4 × 102 μA mM−1 cm−2, 0.17 μM of H2O2, and 20 μM–3.5 mM of H2O2, respectively, which are well comparable with the best values for other types of H2O2 sensors reported recently in literature. The particular advantages of the composite PEG-AuNP sensors are commercial source materials, a simple fabrication procedure, the bioinert character of the PEG matrix, the 3D character of the AuNP assembly, and the possibility of transferring the nanosheet sensing element to any secondary substrate, including the glassy carbon electrode of the electrochemical cell. In particular, the bioinert character of the PEG matrix can be of importance for potential biological and biomedical applications of the designed sensing platform. Full article
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<p>Schematic illustration of the fabrication procedure for the PEG-AuNP composite films and nanosheets, along with the chemical structures of STAR-NH<sub>2</sub>, STAR-EPX, and ethanol-amine-like crosslinking bonds. A monomer of the PEG arms of the precursors (−EG−) is described by the formula (−O−CH<sub>2</sub>−CH<sub>2</sub>−).</p>
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<p>Si 2p (<b>a</b>), C 1s (<b>b</b>), O 1s (<b>c</b>) and Au 4f (<b>d</b>) XP spectra of SiO<sub>2</sub> passivated Si(100) substrate and the PEG-AuNP films on this substrate, prepared at a concentration of the 4-arm STAR-NH<sub>2</sub> and 4-arm STAR-EPX precursors in the primary solution of either 10 or 30 mg/mL. The positions of some peaks are traced by the vertical light gray dashed lines.</p>
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<p>(<b>a</b>) Large-scale SEM image of a PEG-AuNP film; (<b>b</b>) high-resolution SEM image of this film; and (<b>c</b>) an image of this film after its transfer onto supporting, quadratic Cu mesh. The gray and nearly white areas in (<b>a</b>) represent unfolded parts of the nanosheet and folds, respectively.</p>
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<p>(<b>a</b>) CV curves for the reference, pristine PEG film (blue line) and the composite PEG-AuNP film (red line); (<b>b</b>) 30 subsequent CV curves for the composite PEG-AuNPs’ film; the individual curves overlap strongly and cannot be distinguished. The measurements were performed in PBS at the presence of 2 mM H<sub>2</sub>O<sub>2</sub>. Inset: CV curve for the composite PEG-AuNP film at the presence of PBS only. The scan rate was set to 30 mV/s for all CV curves shown.</p>
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<p>(<b>a</b>) CV curves for the composite PEG-AuNP film acquired at different scan rates; (<b>b</b>) plot of the anodic peak current, <span class="html-italic">I<sub>p</sub></span> vs. <span class="html-italic">v</span><sup>1/2</sup> (black-filled squares) along with a linear fit of the experimental data (red dashed line).</p>
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<p>(<b>a</b>) Amperometric response of the composite PEG-AuNP film to increased H<sub>2</sub>O<sub>2</sub> concentration upon successive, stepwise addition of 20 μM (100–350 s), 50 μM (400–750 s), 100 μM (800–1250 s), and 200 μM (1300–1900 s) of H<sub>2</sub>O<sub>2</sub> to 50 mL of PBS buffer. Inset: zoomed presentation of the response to the smallest doses of H<sub>2</sub>O<sub>2</sub>. Several successive points in time of H<sub>2</sub>O<sub>2</sub> addition are exemplarily shown by vertical arrows. The potential was set to −0.2 V. (<b>b</b>) Current response to the H<sub>2</sub>O<sub>2</sub> concentration (black-filled circles), along with a linear fit to the experimental data (red dashed line).</p>
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<p>Amperometric response of the composite PEG-AuNP film to the stepwise injection of H<sub>2</sub>O<sub>2</sub> and potentially interfering substances into 50 mL of PBS. The potential was set to −0.2 V, which, according to the CV data (<a href="#nanomaterials-13-03137-f005" class="html-fig">Figure 5</a>), was the optimal value for the H<sub>2</sub>O<sub>2</sub> sensing by amperometry.</p>
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12 pages, 3099 KiB  
Article
Free-Breathing StarVIBE Sequence for the Detection of Extranodal Extension in Head and Neck Cancer: An Image Quality and Diagnostic Performance Study
by Jiangming Qu, Tong Su, Boju Pan, Tao Zhang, Xingming Chen, Xiaoli Zhu, Yu Chen, Zhuhua Zhang and Zhengyu Jin
Cancers 2023, 15(20), 4992; https://doi.org/10.3390/cancers15204992 - 15 Oct 2023
Cited by 1 | Viewed by 1504
Abstract
(1) Background: This study aims to evaluate the image quality of abnormal cervical lymph nodes in head and neck cancer and the diagnostic performance of detecting extranodal extension (ENE) using free-breathing StarVIBE. (2) Methods: In this retrospective analysis, 80 consecutive head and neck [...] Read more.
(1) Background: This study aims to evaluate the image quality of abnormal cervical lymph nodes in head and neck cancer and the diagnostic performance of detecting extranodal extension (ENE) using free-breathing StarVIBE. (2) Methods: In this retrospective analysis, 80 consecutive head and neck cancer patients underwent StarVIBE before neck dissection at an academic center. Image quality was compared with conventional VIBE available for 28 of these patients. A total of 73 suspicious metastatic lymph nodes from 40 patients were found based on morphology and enhancement pattern on StarVIBE. Sensitivity (SN), specificity (SP), and odds ratios were calculated for each MR feature from StarVIBE to predict pathologic ENE. (3) Results: StarVIBE showed significantly superior image quality, signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR) for enlarged lymph nodes compared to VIBE. The MR findings of “invading adjacent planes” (SN, 0.54; SP, 1.00) and “matted nodes” (SN, 0.72; SP, 0.89) emerged as notable observations. The highest diagnostic performance was attained by combining these two features (SN, 0.93; SP, 0.89). (4) Conclusions: This study confirms that StarVIBE offers superior image quality for abnormal lymph nodes compared to VIBE, and it can accurately diagnose ENE by utilizing a composite MR criterion in head and neck cancer. Full article
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<p>Derivation of study population and analyses schema.</p>
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<p>(<b>a</b>) StarVIBE image of a 46-year-old male patient with pT4aN3bM0 hypopharyngeal cancer invading esophageal muscle, showing level IV matted nodes on the right side (arrows); (<b>b</b>) VIBE image of the same section; (<b>c</b>) pathologic section through the matted node, showing ENE. (Hematoxylin-eosin stain; 4×).</p>
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<p>(<b>a</b>) StarVIBE image of a 60-year-old male patient with pT3N3bM0 hypopharyngeal cancer. The level III matted nodes on the right side showed a distinct margin with the sternocleidomastoid muscle; however, there was a suspicious invasion of the adjacent muscle (arrows). (<b>b</b>) VIBE image of the same section revealed level III matted nodes on the right side with a less distinct margin between the lymph nodes and adjacent muscle (arrows) attributed to low CNR. (<b>c</b>,<b>d</b>) Pathologic section through one of the matted nodes. The metastatic lymph node was in close proximity to the striated muscle, showing only a local extension into the adjacent muscle (arrows), while the remaining margin appeared to be absent of ENE (Hematoxylin-eosin stain, (<b>c</b>), 4×, (<b>d</b>), 50×).</p>
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13 pages, 2037 KiB  
Article
Reproducible Bioinformatics Analysis Workflows for Detecting IGH Gene Fusions in B-Cell Acute Lymphoblastic Leukaemia Patients
by Ashlee J. Thomson, Jacqueline A. Rehn, Susan L. Heatley, Laura N. Eadie, Elyse C. Page, Caitlin Schutz, Barbara J. McClure, Rosemary Sutton, Luciano Dalla-Pozza, Andrew S. Moore, Matthew Greenwood, Rishi S. Kotecha, Chun Y. Fong, Agnes S. M. Yong, David T. Yeung, James Breen and Deborah L. White
Cancers 2023, 15(19), 4731; https://doi.org/10.3390/cancers15194731 - 26 Sep 2023
Cited by 3 | Viewed by 2155
Abstract
B-cell acute lymphoblastic leukaemia (B-ALL) is characterised by diverse genomic alterations, the most frequent being gene fusions detected via transcriptomic analysis (mRNA-seq). Due to its hypervariable nature, gene fusions involving the Immunoglobulin Heavy Chain (IGH) locus can be difficult to detect [...] Read more.
B-cell acute lymphoblastic leukaemia (B-ALL) is characterised by diverse genomic alterations, the most frequent being gene fusions detected via transcriptomic analysis (mRNA-seq). Due to its hypervariable nature, gene fusions involving the Immunoglobulin Heavy Chain (IGH) locus can be difficult to detect with standard gene fusion calling algorithms and significant computational resources and analysis times are required. We aimed to optimize a gene fusion calling workflow to achieve best-case sensitivity for IGH gene fusion detection. Using Nextflow, we developed a simplified workflow containing the algorithms FusionCatcher, Arriba, and STAR-Fusion. We analysed samples from 35 patients harbouring IGH fusions (IGH::CRLF2 n = 17, IGH::DUX4 n = 15, IGH::EPOR n = 3) and assessed the detection rates for each caller, before optimizing the parameters to enhance sensitivity for IGH fusions. Initial results showed that FusionCatcher and Arriba outperformed STAR-Fusion (85–89% vs. 29% of IGH fusions reported). We found that extensive filtering in STAR-Fusion hindered IGH reporting. By adjusting specific filtering steps (e.g., read support, fusion fragments per million total reads), we achieved a 94% reporting rate for IGH fusions with STAR-Fusion. This analysis highlights the importance of filtering optimization for IGH gene fusion events, offering alternative workflows for difficult-to-detect high-risk B-ALL subtypes. Full article
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<p>(<b>A</b>) Schematic of a gene fusion event, in which two separate genes located on the same or different chromosomes become juxtaposed, following a chromosomal rearrangement or translocation event. (<b>B</b>) Fusion events can be identified through the alignment of paired-end mRNA-seq reads to the reference genome, when each end of the paired read maps entirely to two different genomic regions (Spanning) or when one end of the read overlaps the fusion breakpoint (Chimeric).</p>
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<p>Schematic of the <span class="html-italic">RIGHT</span> workflow. STAR-Fusion, Arriba and FusionCatcher algorithms are all executed using the Nextflow system, taking an initial. csv sample manifest as input, which contains directory links and file base names for paired-end RNA-seq FASTQ files. The config file contains information regarding the resources requested, the scheduler used, e.g., Conda, Slurm, and any container options, such as Docker or Singularity. Arriba and STAR-Fusion have different formatting requirements for their alignment inputs, necessitating two separate STAR alignment runs.</p>
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<p>The number of <span class="html-italic">IGH</span> fusion events reported by each algorithm using default parameters (<span class="html-italic">IGH::CRLF2</span> n = 17, <span class="html-italic">IGH::DUX4</span> n = 15, <span class="html-italic">IGH::EPOR</span> n = 3).</p>
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<p>The number of <span class="html-italic">IGH</span> gene fusions reported by STAR-Fusion with the default parameter values vs. the altered parameter values. Read Support includes novel junction support reads and junction support reads, and FFPM is the fusion fragments per million reads.</p>
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<p>The intersection of gene fusion events reported by each algorithm, from (<b>A</b>) the full default pipeline, (<b>B</b>) Arriba, FusionCatcher, and the best-performing STAR-Fusion test (Full Monty).</p>
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