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21 pages, 1301 KiB  
Review
Medicinal Cannabis and the Intestinal Microbiome
by Luis Vitetta, Tamara Nation, Debbie Oldfield and Michael Thomsen
Pharmaceuticals 2024, 17(12), 1702; https://doi.org/10.3390/ph17121702 - 17 Dec 2024
Viewed by 70
Abstract
Historically, the multiple uses of cannabis as a medicine, food, and for recreational purposes as a psychoactive drug span several centuries. The various components of the plant (i.e., seeds, roots, leaves and flowers) have been utilized to alleviate symptoms of inflammation and pain [...] Read more.
Historically, the multiple uses of cannabis as a medicine, food, and for recreational purposes as a psychoactive drug span several centuries. The various components of the plant (i.e., seeds, roots, leaves and flowers) have been utilized to alleviate symptoms of inflammation and pain (e.g., osteoarthritis, rheumatoid arthritis), mood disorders such as anxiety, and intestinal problems such as nausea, vomiting, abdominal pain and diarrhea. It has been established that the intestinal microbiota progresses neurological, endocrine, and immunological network effects through the gut–microbiota–brain axis, serving as a bilateral communication pathway between the central and enteric nervous systems. An expanding body of clinical evidence emphasizes that the endocannabinoid system has a fundamental connection in regulating immune responses. This is exemplified by its pivotal role in intestinal metabolic and immunity equilibrium and intestinal barrier integrity. This neuromodulator system responds to internal and external environmental signals while also serving as a homeostatic effector system, participating in a reciprocal association with the intestinal microbiota. We advance an exogenous cannabinoid–intestinal microbiota–endocannabinoid system axis potentiated by the intestinal microbiome and medicinal cannabinoids supporting the mechanism of action of the endocannabinoid system. An integrative medicine model of patient care is advanced that may provide patients with beneficial health outcomes when prescribed medicinal cannabis. Full article
(This article belongs to the Special Issue Therapeutic Potential for Cannabinoid and Its Receptor)
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<p>Diverse routes of medicinal cannabis administration [<a href="#B14-pharmaceuticals-17-01702" class="html-bibr">14</a>,<a href="#B15-pharmaceuticals-17-01702" class="html-bibr">15</a>,<a href="#B16-pharmaceuticals-17-01702" class="html-bibr">16</a>,<a href="#B17-pharmaceuticals-17-01702" class="html-bibr">17</a>,<a href="#B18-pharmaceuticals-17-01702" class="html-bibr">18</a>] that target specific organs and the endocannabinoid system influenced by the gut microbiota.</p>
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<p>Diagrammatic representation of ECS receptors CB R<sub>1</sub> and CB R<sub>2</sub> that have been identified on neuronal cells [<a href="#B95-pharmaceuticals-17-01702" class="html-bibr">95</a>] and immune system cells (i.e., B lymphocytes) [<a href="#B96-pharmaceuticals-17-01702" class="html-bibr">96</a>] and can bind CBD and THC and their effects on the gut and intestinal microbiota (adapted and modified from Izzo and Sharkey; Storr et al.; Al-Khazaleh et al.) [<a href="#B35-pharmaceuticals-17-01702" class="html-bibr">35</a>,<a href="#B36-pharmaceuticals-17-01702" class="html-bibr">36</a>,<a href="#B71-pharmaceuticals-17-01702" class="html-bibr">71</a>]. ECS = endocannabinoid system; CBD = cannabidiol; CB R<sub>1</sub> = Cannabinoid Receptor 1; CB R<sub>2</sub> = Cannabinoid Receptor 2.</p>
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25 pages, 5413 KiB  
Article
Whole-Genome Profiling of Endophytic Strain B.L.Ns.14 from Nigella sativa Reveals Potential for Agricultural Bioenhancement
by Dimitra Douka, Tasos-Nektarios Spantidos, Polina C. Tsalgatidou, Panagiotis Katinakis and Anastasia Venieraki
Microorganisms 2024, 12(12), 2604; https://doi.org/10.3390/microorganisms12122604 - 16 Dec 2024
Viewed by 457
Abstract
Endophytic microbes in medicinal plants often possess beneficial traits for plant health. This study focuses on the bacterial endophyte strain B.L.Ns.14, isolated from Nigella sativa leaves, which demonstrated multiple plant growth-promoting properties. In vitro tests showed that B.L.Ns.14 supports plant growth, colonization, and [...] Read more.
Endophytic microbes in medicinal plants often possess beneficial traits for plant health. This study focuses on the bacterial endophyte strain B.L.Ns.14, isolated from Nigella sativa leaves, which demonstrated multiple plant growth-promoting properties. In vitro tests showed that B.L.Ns.14 supports plant growth, colonization, and tolerance to abiotic stress. The strain also exhibited antifungal activity against phytopathogens such as Rhizoctonia solani, Colletotrichum acutatum, Verticillium dahliae, and Fusarium oxysporum f. sp. radicis-lycopersici. Whole-genome analysis, supported by ANI and dDDH values, identified B.L.Ns.14 as Bacillus halotolerans. Genome mining revealed 128 active carbohydrate enzymes (Cazymes) related to endophytism and biocontrol functions, along with genes involved in phosphate solubilization, siderophore and IAA production, biofilm formation, and motility. Furthermore, genes for osmolyte metabolism, Na+/H+ antiporters, and stress response proteins were also identified. The genome harbors 12 secondary metabolite biosynthetic gene clusters, including those for surfactin, plipastatin mojavensin, rhizocticin A, and bacilysin, known for their antagonistic effects against fungi. Additionally, B.L.Ns.14 promoted Arabidopsis thaliana growth under both normal and saline conditions, and enhanced Solanum lycopersicum growth via seed biopriming and root irrigation. These findings suggest that Bacillus halotolerans B.L.Ns.14 holds potential as a biocontrol and plant productivity agent, warranting further field testing. Full article
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<p>Illustration of antifungal activity of B.L.Ns.14 in vitro by using dual culture assay.</p>
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<p>Plant growth-promoting traits of B.L.Ns.14; (<b>a</b>) siderophore production, (<b>b</b>) phosphate solubilization, (<b>c</b>) protease secretion, (<b>d</b>) cellulase secretion, (<b>e</b>) urease production, and (<b>f</b>) acetoin production.</p>
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<p>Colonization-related traits of B.L.Ns.14; (<b>a</b>) swarming motility, (<b>b</b>) swimming motility, and (<b>c</b>) biofilm formation ability.</p>
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<p>Survival ability of B.L.Ns.14 under drought and salt stress conditions, as well as under different temperatures.</p>
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<p>Antibiotic susceptibility test of B.L.Ns.14 by using six commercial antibiotics of three fixed concentrations (μg/mL); (A) ampicillin, (T) tetracycline, (S) streptomycin, (R) rifampicin, (K) kanamycin, and (C) chloramphenicol. The absence or presence of the clear zone around the soaked paper disks shows resistance or susceptibility of the strain. Red arrows indicate the susceptibility of the strain defined by the halo formed around the paper disks.</p>
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<p>Sequence-based phylogenomic tree constructed on TYGS (<a href="https://tygs.dsmz.de/" target="_blank">https://tygs.dsmz.de/</a>) depicting the position of bacterial strain B.L.Ns.14 relative to other phylogenetically close species. The tree was generated with FastME from Genome BLAST Distance Phylogeny (GBDP) distances [<a href="#B49-microorganisms-12-02604" class="html-bibr">49</a>]. The numbers above the branches are GBDP pseudo-bootstrap support values &gt;60% from 100 replications. The branch lengths are scaled in terms of GBDP distance formula d5 and the tree was rooted at the midpoint. The accession numbers of genome sequences are listed in parentheses.</p>
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<p>Results of antiSMASH analysis of the <span class="html-italic">B. halotolerans</span> B.L.Ns.14 genome. Illustration of detecting genomic regions where biosynthetic gene clusters of secondary metabolites are located. The closest core biosynthetic gene clusters of known and unknown BGCs according to the MIBiG database are depicted along with some of the best hits in ClusterBlast. Core biosynthetic genes of the cyclic lipopeptides and the aminoacid sequences are reported, as well as the gene similarity percentage given by antiSMASH.</p>
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<p>The beneficial activity of Β.L.Ns.14 on <span class="html-italic">A. thaliana</span> Col-0 seedlings in vitro, under normal and saline conditions (100 mM NaCl). (<b>A</b>) Representative images of the seedlings for the two treatments under normal (NC) and saline (SC) conditions; (<b>B</b>) shoot fresh weight of the seedlings (mg) (<span class="html-italic">n</span> = 12); (<b>C</b>) root fresh weight of the seedlings (mg) (n = 12); (<b>D</b>) primary root length (cm) (n = 12); and (<b>E</b>) total lateral root number (n = 12). Data represent the mean (SD) of seedlings from one representative experiment. Asterisks indicate statistically significant differences after <span class="html-italic">t</span>-test analysis (**, <span class="html-italic">p</span> &lt; 0.01, ***, <span class="html-italic">p</span> &lt; 0.001, ****, and <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>The beneficial activity of Β.L.Ns.14 on <span class="html-italic">A. thaliana</span> Col-0 seedlings in vitro via volatile emission, under normal and saline conditions (100 mM NaCl). (<b>A</b>) Representative images of the seedlings for the two treatments under normal (NC) and saline (SC) conditions; (<b>B</b>) shoot fresh weight of the seedlings (mg) (n = 12); and (<b>C</b>) rosette diameter (cm) (n = 12). Data represent the mean (SD) of seedlings from one representative experiment. Asterisks indicate statistically significant differences after <span class="html-italic">t</span>-test analysis (*, <span class="html-italic">p</span> &lt; 0.1, **, <span class="html-italic">p</span> &lt; 0.01, and ****, <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Plant growth-promoting effect of Β.L.Ns.14 on <span class="html-italic">S. lycopersicum</span> var. Chondrokatsari Messinias; depiction of tomato seedlings (<b>A</b>) treated by seed biopriming method (scale bar = 1 cm) after 5 days; (<b>B</b>) treated by seed biopriming and root irrigation after 4 weeks; (<b>C</b>) radical growth (cm) emerged from bioprimed seeds from 3 replicates after using inoculants with bacterial suspensions (10<sup>6</sup> CFU/mL and 10<sup>8</sup> CFU/mL), each containing 15 seeds (n = 3); (<b>D</b>) germination (%) of bioprimed seeds with bacterial suspensions (10<sup>6</sup> CFU/mL and 10<sup>8</sup> CFU/mL), each containing 15 seeds (n = 3); and (<b>E</b>) data of shoot length (cm), shoot fresh weight (gr), and shoot dry weight (gr) of tomato seedlings (n = 30) after 4 weeks emerged from bioprimed seeds and root irrigation with bacterial suspension (10<sup>8</sup> CFU/mL) in pots. Data represent the mean (SD) of seedlings and asterisks indicate statistically significant differences after <span class="html-italic">t</span>-test analysis (ns, non-significant; ****, <span class="html-italic">p</span> &lt; 0.0001).</p>
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22 pages, 5934 KiB  
Article
Molecular Insights into Structural Dynamics and Binding Interactions of Selected Inhibitors Targeting SARS-CoV-2 Main Protease
by Yuanyuan Wang, Yulin Zhou and Faez Iqbal Khan
Int. J. Mol. Sci. 2024, 25(24), 13482; https://doi.org/10.3390/ijms252413482 - 16 Dec 2024
Viewed by 305
Abstract
The SARS-CoV-2 main protease (Mpro, also known as 3CLpro) is a key target for antiviral therapy due to its critical role in viral replication and maturation. This study investigated the inhibitory effects of Bofutrelvir, Nirmatrelvir, and Selinexor on 3CLpro through molecular docking, molecular [...] Read more.
The SARS-CoV-2 main protease (Mpro, also known as 3CLpro) is a key target for antiviral therapy due to its critical role in viral replication and maturation. This study investigated the inhibitory effects of Bofutrelvir, Nirmatrelvir, and Selinexor on 3CLpro through molecular docking, molecular dynamics (MD) simulations, and free energy calculations. Nirmatrelvir exhibited the strongest binding affinity across docking tools (AutoDock Vina: −8.3 kcal/mol; DiffDock: −7.75 kcal/mol; DynamicBound: 7.59 to 7.89 kcal/mol), outperforming Selinexor and Bofutrelvir. Triplicate 300 ns MD simulations revealed that the Nirmatrelvir-3CLpro complex displayed high conformational stability, reduced root mean square deviation (RMSD), and a modest decrease in solvent-accessible surface area (SASA), indicating enhanced structural rigidity. Gibbs free energy analysis highlighted greater flexibility in unbound 3CLpro, stabilized by Nirmatrelvir binding, supported by stable hydrogen bonds. MolProphet prediction tools, targeting the Cys145 residue, confirmed that Nirmatrelvir exhibited the strongest binding, forming multiple hydrophobic, hydrogen, and π-stacking interactions with key residues, and had the lowest predicted IC50/EC50 (9.18 × 10−8 mol/L), indicating its superior potency. Bofutrelvir and Selinexor showed weaker interactions and higher IC50/EC50 values. MM/PBSA analysis calculated a binding free energy of −100.664 ± 0.691 kJ/mol for the Nirmatrelvir-3CLpro complex, further supporting its stability and binding potency. These results underscore Nirmatrelvir’s potential as a promising therapeutic agent for SARS-CoV-2 and provide novel insights into dynamic stabilizing interactions through AI-based docking and long-term MD simulations. Full article
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Figure 1
<p>(<b>A</b>) Crystal structure of SARS-CoV-2 3CLpro (PDB: 1P9S) showing two monomers (monomer A in red and monomer B in green). (<b>B</b>) Crystal structure of the SARS-CoV-2 3CLpro monomer (PDB: 7ALH) showing the three domains.</p>
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<p>Binding interactions of the three compounds with SARS-CoV-2 3CLpro: (<b>A</b>) Nirmatrelvir, (<b>B</b>) Selinexor, and (<b>C</b>) Bofutrelvir. (<b>1</b>) Active site view showing drug binding. (<b>2</b>) Surface view highlighting hydrogen bond donors and acceptors. (<b>3</b>) Atom-level view of the interactions between the ligand and key active-site residues. (<b>4</b>) 2D interaction map including hydrogen bonds (green dashed lines), hydrophobic interactions (purple dashed lines), and unfavorable contacts (red dashed lines).</p>
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<p>Deep equivariant generative model sampling. (<b>A</b>) The dynamic docking investigation of Nirmatrelvir (red), Bofutrelvir (green), and Selinexor (blue) into the active pocket of SARS-CoV-2 Mpro. In the protein structure, α-helices are shown in red, β-sheets in yellow, and loop regions in green. (<b>B</b>) Protein surface view showing the dynamic poses of these ligands.</p>
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<p>AI-based molecular interactions. The binding modes of (<b>A</b>) Nirmatrelvir, (<b>B</b>) Bofutrelvir, and (<b>C</b>) Selinexor with SARS-CoV-2 Mpro. Analysis of the interactions of SARS-CoV-2 Mpro residues with (<b>D</b>) Nirmatrelvir, (<b>E</b>) Bofutrelvir, and (<b>F</b>) Selinexor.</p>
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<p>Molecular dynamics simulations of SARS-CoV-2 3CL protease in its Nirmatrelvir-unbound and Nirmatrelvir-bound forms. (<b>A</b>) Root mean square deviation (RMSD), (<b>B</b>) Root mean square fluctuations (RMSF), (<b>C</b>) Radius of gyration (Rg), and (<b>D</b>) Hydrogen bond analysis between Nirmatrelvir and 3CL protease. The color black represents 3CL protease alone, while red indicates the 3CL protease in the Nirmatrelvir-3CL protease complex, and green represents the ligand in the Nirmatrelvir-3CL protease complex. The presented charts are the average representation of the triplicate MD simulation runs for the Nirmatrelvir-3CL protease complex.</p>
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<p>(<b>A</b>) Solvent-accessible surface area, and (<b>B</b>) Free energy of solvation. The color black represents 3CL protease alone, while red indicates the 3CL protease in the Nirmatrelvir-3CL protease complex. The SASA was further divided into hydrophobic and hydrophilic regions for (<b>C</b>) 3CL protease alone and (<b>D</b>) 3CL protease in the Nirmatrelvir-3CL protease complex. The presented charts are the average representation of the triplicate MD simulation runs for the Nirmatrelvir-3CL protease complex.</p>
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<p>Secondary structure analysis during the 300 ns MD simulation for (<b>A</b>) unbound 3CL protease and (<b>B</b>) 3CL protease in the Nirmatrelvir-3CL protease complex. The presented charts are the average representation of the triplicate MD simulation runs for the Nirmatrelvir-3CL protease complex. Structure = α-helix + β-sheet + β-bridge + Turn.</p>
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<p>Principal component analysis (PCA) trajectory projections of 3CLpro along eigenvector 1 (PC1) and eigenvector 2 (PC2), comparing the Nirmatrelvir-unbound form and Nirmatrelvir-bound complexes. Trajectory projections for (<b>A</b>) replicate 1, (<b>B</b>) replicate 2, and (<b>C</b>) replicate 3. (<b>D</b>) Eigenvector analysis of the 3CLpro in its Nirmatrelvir-unbound form and Nirmatrelvir-bound complexes. The black color represents the Nirmatrelvir-unbound 3CL protease, while red, green, and blue correspond to the complexed 3CL protease in replicates 1, 2, and 3, respectively. (<b>E</b>) Gibbs free energy (GFE) landscape and the representative structure with the lowest free energy of the Nirmatrelvir-unbound 3CL protease, and (<b>F</b>–<b>H</b>) GFE landscapes and the representative structures with the lowest free energy of the 3CL protease in the Nirmatrelvir-3CL protease complex for replicates 1, 2, and 3. The numbers 0.3083, 0.3438, 0.3208, and 0.2833 represent the free energy values (in kcal/mol) of the minima energy basins, indicating the most stable conformational states within the energy landscape.</p>
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<p>Clustering and binding analysis of the Nirmatrelvir-3CL protease complex. (<b>A</b>) Cluster analysis identified 35, 29, and 17 clusters for replicas 1, 2, and 3, respectively. (<b>B</b>) Superimposition of the representative structure of replica 1 (magenta) with its lowest-energy structure (yellow), showing close alignment. (<b>C</b>) Superimposition of Nirmatrelvir in replica 1’s representative structure (magenta) with its docked pose (teal), revealing minimal deviations. (<b>D</b>) 2D interaction analysis of Nirmatrelvir with 3CL protease based on the representative structure of replica 1.</p>
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<p>The flowchart outlining the analysis of binding affinity and structural dynamics of SARS-CoV-2 3CLpro and its inhibitors.</p>
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14 pages, 1918 KiB  
Article
Enhancing Tensile Bond Strength of Glass Fiber Posts Using Chitosan as a Coupling Agent: A Novel Approach for Improved Dental Restorations
by Noha Taymour, Mohammed Hashim Albin Hejji, Mohammed Faihan Alotaibi, Rakan Abdullah Alzahrani, Ali Mohammed Almarzooq, Ashwin C. Shetty and Shimaa Rifaat
Prosthesis 2024, 6(6), 1561-1574; https://doi.org/10.3390/prosthesis6060112 - 16 Dec 2024
Viewed by 133
Abstract
Objectives: This study was designed to assess the effectiveness of chitosan as a coupling agent for improving the tensile bond strength of fiber posts. Methods: A total of 91 single-rooted mandibular teeth were root canal-filled. Post spaces were created and categorized into seven [...] Read more.
Objectives: This study was designed to assess the effectiveness of chitosan as a coupling agent for improving the tensile bond strength of fiber posts. Methods: A total of 91 single-rooted mandibular teeth were root canal-filled. Post spaces were created and categorized into seven groups: Group A (Control), Group B (Silane), Group C (Chitosan), Group D (37% Phosphoric acid + Silane), Group E (37% Phosphoric acid + Chitosan), Group F (10% Hydrogen Peroxide + Silane), and Group G (10% Hydrogen Peroxide + Chitosan). Posts were cemented and tensile bond strength was measured, while the morphological structure of the fiber posts was analyzed using Scanning Electron Microscopy. One-way (ANOVA) and Tukey’s multiple comparison tests were performed at a level of significance of 5%. The percentages of fracture patterns among the groups were compared. Results: 10% Hydrogen peroxide + Chitosan exhibited the significantly highest tensile bond strength (p < 0.001). Adhesive failures were more frequent in Groups A, B, C, and D, whereas cohesive failures within the resin cement were predominant in Groups E, F, and G. Conclusions: The protocol of using 10% hydrogen peroxide followed by a chitosan coupling agent significantly improved tensile bond strengths for glass fiber posts, which highlights the potential of using chitosan as a natural biopolymer and an alternative to synthetic coupling agents to develop more effective bonding strategies for dental restorations. Full article
(This article belongs to the Special Issue Advancements in Adhesion Techniques and Materials in Prosthodontics)
13 pages, 5686 KiB  
Article
The Influence of Insert Mounting Errors on the Surface Roughness of 1.0503 Steel in Face Milling
by Lukasz Nowakowski, Jaroslaw Rolek, Slawomir Blasiak and Michal Skrzyniarz
Materials 2024, 17(24), 6144; https://doi.org/10.3390/ma17246144 - 16 Dec 2024
Viewed by 263
Abstract
This article looked at how insert mounting errors affect the cutting tool performance in the face milling of 1.0503 steel. This study was conducted for 490-050Q22-08M inserts mounted in a Sandvik Coromant 490-050Q22-08M CoroMill cutter attached to an AVIA VMC 800 vertical milling [...] Read more.
This article looked at how insert mounting errors affect the cutting tool performance in the face milling of 1.0503 steel. This study was conducted for 490-050Q22-08M inserts mounted in a Sandvik Coromant 490-050Q22-08M CoroMill cutter attached to an AVIA VMC 800 vertical milling center. A 3D geometrical model of the cutter was developed to determine the engagement of the particular inserts in the material removal process at different feeds per tooth. The test results showed that, at feeds ranging from 0.02 mm/tooth to 0.06 mm/tooth, only three out of five inserts took part in the face milling process, while at feeds higher than 0.12 mm/tooth, all the inserts mounted in the cutter body were engaged. The relative displacements in the tool-workpiece system were measured along the axis of rotation of the tool using a Renishaw XL-80 laser interferometer. The vibration signals recorded during cutting confirmed that there was a clear relationship between the number of inserts engaged in the process and the root mean square, the arithmetic mean, and the DC component. Multiple 2D scans of the face milled surface to measure parameters Ra and Rt helped determine the feed range where the cutting process was stable. The conducted studies allowed for the identification of optimal operating ranges for a tool with parameterized errors in the mounting of inserts within the tool body. The influence of these mounting errors, in correlation with the feed per tooth, on the surface roughness of 1.0503 steel was presented and compared with five other materials. Full article
(This article belongs to the Section Manufacturing Processes and Systems)
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<p>CoroMill 490-050Q22-08M cutter made by Sandvik Coromant.</p>
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<p>Test rig with a Sandvik Coromant CoroMill 490-050Q22-08M cutter.</p>
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<p>Load per insert at a feed of 0.2 mm/tooth.</p>
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<p>Signal representing a displacement in the tool-workpiece system.</p>
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<p>Load per insert at a feed of 0.2 mm/tooth, Rms—root mean square, Mean—arithmetic mean, MDC—DC component, and σ—standard deviation.</p>
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<p>Results of the FFT analysis for relative displacement signals versus feed per tooth.</p>
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<p>Spectrogram registered at a feed of 0.02 mm/tooth.</p>
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<p>Isometric views of the surface roughness determined for 1.0503 steel face milled at v<sub>c</sub> = 300 m/min and a<sub>p</sub> = 0.2 mm and different feeds per tooth: (<b>a</b>) f<sub>z</sub> = 0.02 mm/tooth; (<b>b</b>) f<sub>z</sub> = 0.04 mm/tooth; (<b>c</b>) f<sub>z</sub> = 0.06 mm/tooth; (<b>d</b>) f<sub>z</sub> = 0.08 mm/tooth; (<b>e</b>) f<sub>z</sub> = 0.1 mm/tooth; (<b>f</b>) f<sub>z</sub> = 0.12 mm/tooth; (<b>g</b>) f<sub>z</sub> = 0.14 mm/tooth; (<b>h</b>) f<sub>z</sub> = 0.16 mm/tooth; (<b>i</b>) f<sub>z</sub> = 0.18 mm/tooth; (<b>j</b>) f<sub>z</sub> = 0.2 mm/tooth; (<b>k</b>) f<sub>z</sub> = 0.22 mm/tooth.</p>
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<p>Feed per tooth vs. surface roughness Ra for the face milling of 1.0503 steel.</p>
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<p>Feed per tooth vs. surface roughness Ra for the face milling for different materials.</p>
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28 pages, 895 KiB  
Article
Computational Analysis of Parallel Techniques for Nonlinear Biomedical Engineering Problems
by Mudassir Shams and Bruno Carpentieri
Algorithms 2024, 17(12), 575; https://doi.org/10.3390/a17120575 - 14 Dec 2024
Viewed by 195
Abstract
In this study, we develop new efficient parallel techniques for solving both distinct and multiple roots of nonlinear problems at the same time. The parallel techniques represent an innovative contribution to the discipline, with local convergence of the ninth order. Theoretical research shows [...] Read more.
In this study, we develop new efficient parallel techniques for solving both distinct and multiple roots of nonlinear problems at the same time. The parallel techniques represent an innovative contribution to the discipline, with local convergence of the ninth order. Theoretical research shows the rapid convergence and effectiveness of the proposed parallel schemes. To assess the suggested scheme’s stability and consistency, we look at certain biomedical engineering applications, such as osteoporosis in Chinese women, blood rheology, and differential equations. Overall, detailed analyses of convergence behavior, memory utilization, computational time, and percentage computational efficiency show that the novel parallel techniques outperform the traditional methods. The proposed methods would be more suitable for large-scale computational problems in biomedical applications due to their advantages in memory efficiency, CPU time, and error reduction. Full article
(This article belongs to the Section Parallel and Distributed Algorithms)
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<p>(<b>a</b>–<b>d</b>) Error graph of the parallel schemes for solving (<a href="#FD36-algorithms-17-00575" class="html-disp-formula">36</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel scheme for solving (<a href="#FD36-algorithms-17-00575" class="html-disp-formula">36</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel schemes utilizing random initial values for solving (<a href="#FD36-algorithms-17-00575" class="html-disp-formula">36</a>).</p>
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<p>(<b>a</b>–<b>d</b>) Error graph of parallel scheme for solving (<a href="#FD39-algorithms-17-00575" class="html-disp-formula">39</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel schemes for solving (<a href="#FD39-algorithms-17-00575" class="html-disp-formula">39</a>).</p>
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<p>(<b>a</b>–<b>d</b>). CPU time and memory consumed by parallel schemes for solving nonlinear Equation (<a href="#FD39-algorithms-17-00575" class="html-disp-formula">39</a>) using random initial values.</p>
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<p>(<b>a</b>–<b>d</b>) Error graph of parallel scheme for solving (<a href="#FD45-algorithms-17-00575" class="html-disp-formula">45</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel schemes for solving (<a href="#FD45-algorithms-17-00575" class="html-disp-formula">45</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel schemes for solving nonlinear Equation (<a href="#FD45-algorithms-17-00575" class="html-disp-formula">45</a>) using random initial values.</p>
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<p>(<b>a</b>–<b>d</b>) Error graph of the parallel scheme for solving (<a href="#FD50-algorithms-17-00575" class="html-disp-formula">50</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel scheme for solving (<a href="#FD50-algorithms-17-00575" class="html-disp-formula">50</a>).</p>
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<p>(<b>a</b>–<b>d</b>) CPU time and memory consumed by parallel schemes for solving (<a href="#FD50-algorithms-17-00575" class="html-disp-formula">50</a>) utalizing random initial vectors.</p>
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16 pages, 1611 KiB  
Article
Multiple Myeloma: Genetic and Epigenetic Biomarkers with Clinical Potential
by Yuliya A. Veryaskina, Sergei E. Titov, Natalia V. Skvortsova, Igor B. Kovynev, Oksana V. Antonenko, Sergei A. Demakov, Pavel S. Demenkov, Tatiana I. Pospelova, Mikhail K. Ivanov and Igor F. Zhimulev
Int. J. Mol. Sci. 2024, 25(24), 13404; https://doi.org/10.3390/ijms252413404 - 13 Dec 2024
Viewed by 293
Abstract
Multiple myeloma (MM) is characterized by the uncontrolled proliferation of monoclonal plasma cells and accounts for approximately 10% of all hematologic malignancies. The clinical outcomes of MM can exhibit considerable variability. Variability in both the genetic and epigenetic characteristics of MM undeniably contributes [...] Read more.
Multiple myeloma (MM) is characterized by the uncontrolled proliferation of monoclonal plasma cells and accounts for approximately 10% of all hematologic malignancies. The clinical outcomes of MM can exhibit considerable variability. Variability in both the genetic and epigenetic characteristics of MM undeniably contributes to tumor dynamics. The aim of the present study was to identify biomarkers with the potential to improve the accuracy of prognosis assessment in MM. Initially, miRNA sequencing was conducted on bone marrow (BM) samples from patients with MM. Subsequently, the expression levels of 27 microRNAs (miRNA) and the gene expression levels of ASF1B, CD82B, CRISP3, FN1, MEF2B, PD-L1, PPARγ, TERT, TIMP1, TOP2A, and TP53 were evaluated via real-time reverse transcription polymerase chain reaction in BM samples from patients with MM exhibiting favorable and unfavorable prognoses. Additionally, the analysis involved the bone marrow samples from patients undergoing examinations for non-cancerous blood diseases (NCBD). The findings indicate a statistically significant increase in the expression levels of miRNA-124, -138, -10a, -126, -143, -146b, -20a, -21, -29b, and let-7a and a decrease in the expression level of miRNA-96 in the MM group compared with NCBD (p < 0.05). No statistically significant differences were detected in the expression levels of the selected miRNAs between the unfavorable and favorable prognoses in MM groups. The expression levels of ASF1B, CD82B, and CRISP3 were significantly decreased, while those of FN1, MEF2B, PDL1, PPARγ, and TERT were significantly increased in the MM group compared to the NCBD group (p < 0.05). The MM group with a favorable prognosis demonstrated a statistically significant decline in TIMP1 expression and a significant increase in CD82B and CRISP3 expression compared to the MM group with an unfavorable prognosis (p < 0.05). From an empirical point of view, we have established that the complex biomarker encompassing the CRISP3/TIMP1 expression ratio holds promise as a prognostic marker in MM. From a fundamental point of view, we have demonstrated that the development of MM is rooted in a cascade of complex molecular pathways, demonstrating the interplay of genetic and epigenetic factors. Full article
(This article belongs to the Special Issue Molecular Mechanisms of mRNA Transcriptional Regulation: 2nd Edition)
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<p>Hierarchical cluster analysis between 16 multiple myeloma (MM) cases and six non-cancerous blood diseases (NCBD) cases for the microRNAs (miRNAs) that were chosen for validation by RT-PCR in the analyzed groups. Each column represents the expression of a miRNA, and each row denotes a nucleic acid sample. Yellow: upregulated miRNA; blue: downregulated miRNA; green: minor changes; red: a graphical representation of a group of samples.</p>
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<p>Comparative analysis of gene expression levels between multiple myeloma (MM) (n = 45) and non-cancerous samples (NCBD) (n = 43). The figure presents the median value, upper and lower quartiles, non-outlier range, and outliers appearing as circles.</p>
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<p>Comparative analysis of gene expression levels between multiple myeloma samples of patients with favorable (n = 28) and unfavorable (n = 17) prognosis. The figure presents the median value, upper and lower quartiles, non-outlier range, and outliers appearing as circles.</p>
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<p>ROC analysis for the (<b>A</b>) <span class="html-italic">CRISP3</span>, (<b>B</b>) <span class="html-italic">TIMP1</span>, and (<b>C</b>) <span class="html-italic">CRISP3</span>/<span class="html-italic">TIMP1</span> genes. AUC, sensitivity (Sn), and specificity (Sp) values are indicated. Red line is a diagonal support line, blue is a ROC curve.</p>
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<p>ROC analysis for the (<b>A</b>) <span class="html-italic">CRISP3</span>, (<b>B</b>) <span class="html-italic">TIMP1</span>, and (<b>C</b>) <span class="html-italic">CRISP3</span>/<span class="html-italic">TIMP1</span> genes. AUC, sensitivity (Sn), and specificity (Sp) values are indicated. Red line is a diagonal support line, blue is a ROC curve.</p>
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<p>Interactions between microRNAs(miRNAs) and their target genes. Blue squares represent miRNAs, and purple circles indicate their target genes.</p>
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19 pages, 3272 KiB  
Article
Physiological Behavior and Antioxidant Responses of Abelmoschus esculentus (L.) Exposed to Different Concentrations of Aluminum and Barium
by Rim Kouki, Insaf Bankaji, Saida Hidouri, Hana Bouzahouane, Isabel Caçador, Rosa María Pérez-Clemente and Noomene Sleimi
Horticulturae 2024, 10(12), 1338; https://doi.org/10.3390/horticulturae10121338 - 13 Dec 2024
Viewed by 319
Abstract
Soil contamination by trace metal elements, such as aluminum and barium, presents specific environmental risks, particularly to plant health and agricultural productivity. Excessive accumulation of these toxic elements in plant tissues can alter redox equilibrium and affect homeostasis. This study sought to examine [...] Read more.
Soil contamination by trace metal elements, such as aluminum and barium, presents specific environmental risks, particularly to plant health and agricultural productivity. Excessive accumulation of these toxic elements in plant tissues can alter redox equilibrium and affect homeostasis. This study sought to examine the physiological reactions of Abelmoschus esculentus (L.) under aluminum- and barium-induced stress. The plants were exposed to multiple concentrations of Al or Ba (0, 100, 200, 400 and 600 µM) for 45 days; then, the accumulation potential of Al and Ba, oxidative damage, and antioxidative metabolism were assessed. Key findings showed a proportional distribution of the Al and Ba in roots and aerial parts of the plants, with lower accumulation in the fruits. The occurrence of oxidative damage and the involvement of antioxidant enzymes were demonstrated by increased amounts of malondialdehyde and H2O2, enhanced activity of superoxide dismutase, and decreased catalase activity. The study also highlighted that GSH played a primary role in Al detoxification in the roots and fruits, while phytochelatins were more active in Ba-treated plants, particularly in roots and shoots, facilitating Ba sequestration. Full article
(This article belongs to the Section Biotic and Abiotic Stress)
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<p>Variations in Al (<b>A</b>) and Ba (<b>B</b>) levels in the roots (blue bars), shoots (green bars), and fruits (orange bars) of <span class="html-italic">Abelmoschus esculentus</span> (L.) subjected to Al and Ba treatment at different concentrations. The results are represented as mean values ± SE, n = 10. Bars labeled with different letters indicate significant variations using Tukey’s HSD test at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of the escalating doses of Al (<b>A</b>) and Ba (<b>B</b>) on malondialdehyde (MDA) concentrations in roots (blue bars), shoots (green bars), and fruits (orange bars) of <span class="html-italic">Abelmoschus esculentus</span> (L.). The results are represented as mean values ± SE, n = 10. Bars labeled with different letters indicate significant variations using Tukey’s HSD test at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of the escalating doses of Al (<b>A</b>) and Ba (<b>B</b>) on hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) in roots (blue bars), shoots (green bars), and fruits (orange bars) of <span class="html-italic">Abelmoschus esculentus</span> (L.). The results are represented as mean values ± SE, n = 10. Bars labeled with different letters indicate significant variations using Tukey’s HSD test at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Impact of the escalating doses of Al (<b>A-1</b>–<b>A-3</b>) and Ba (<b>B-1</b>–<b>B-3</b>) on reduced glutathione (GSH) amounts in roots, shoots, and fruits of <span class="html-italic">Abelmoschus esculentus</span> (L.). The results are represented as mean values ± SE; n = 10. Bars labeled with different letters indicate significant variations at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Impact of the escalating doses of Al (<b>A-1</b>–<b>A-3</b>) and Ba (<b>B-1</b>–<b>B-3</b>) on oxidized glutathione (GSSH) amounts in roots, shoots, and fruits of <span class="html-italic">Abelmoschus esculentus</span> (L.). The results are represented as mean values ± SE; n = 10. Bars labeled with different letters indicate significant variations at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Impact of the escalating doses of Al (<b>A</b>) and Ba (<b>B</b>) on phytochelatin (PC) contents in roots (blue bars), shoots (green bars), and fruits (orange bars) of <span class="html-italic">Abelmoschus esculentus</span> (L.) The results are represented as mean values ± SE; n = 10. Bars labeled with different letters indicate significant variations at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Correlation circles from the PCA of aluminum and barium contents, RGR, growth percentage (relative to control) (GP), MDA, H<sub>2</sub>O<sub>2</sub>, SOD, CAT, GR, GSSG, GSH/GSSG ratio, GSH, and PCs. Data of the roots (<b>1</b>), shoots (<b>2</b>), and fruits (<b>3</b>) of <span class="html-italic">Abelmoschus esculentus</span> (L.) plants exposed to rising concentrations of Al (<b>A</b>) and Ba (<b>B</b>).</p>
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14 pages, 17262 KiB  
Article
Analyzing the Accuracy of Satellite-Derived DEMs Using High-Resolution Terrestrial LiDAR
by Aya Hamed Mohamed, Mohamed Islam Keskes and Mihai Daniel Nita
Land 2024, 13(12), 2171; https://doi.org/10.3390/land13122171 - 13 Dec 2024
Viewed by 261
Abstract
The accurate estimation of Digital Elevation Models (DEMs) derived from satellite data is critical for numerous environmental applications. This study evaluates the accuracy and reliability of two satellite-derived elevation models, the ALOS World 3D and SRTM DEMs, specifically for their application in hydrological [...] Read more.
The accurate estimation of Digital Elevation Models (DEMs) derived from satellite data is critical for numerous environmental applications. This study evaluates the accuracy and reliability of two satellite-derived elevation models, the ALOS World 3D and SRTM DEMs, specifically for their application in hydrological modeling. A comparative analysis with Terrestrial Laser Scanning (TLS) measurements assessed the agreement between these datasets. Multiple linear regression models were utilized to evaluate the relationships between the datasets and provide detailed insights into their accuracy and biases. The results indicate significant correlations between satellite DEMs and TLS measurements, with adjusted R-square values of 0.8478 for ALOS and 0.955 for the SRTM. To quantify the average difference, root mean square error (RMSE) values were calculated as 10.43 m for ALOS and 5.65 m for the SRTM. Additionally, slope and aspect analyses were performed to highlight terrain characteristics across the DEMs. Slope analysis showed a statistically significant negative correlation between SRTM and TLS slopes (R2 = 0.16, p < 4.47 × 10−10 indicating a weak relationship, while no significant correlation was observed between ALOS and TLS slopes. Aspect analysis showed significant positive correlations for both ALOS and the SRTM with TLS aspect, capturing 30.21% of the variance. These findings demonstrate the accuracy of satellite-derived elevation models in representing terrain features relative to high-resolution terrestrial data. Full article
(This article belongs to the Section Land – Observation and Monitoring)
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<p>Geographical location of study area.</p>
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<p>Summary of data processing and analysis workflow.</p>
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<p>Analyzing the datasets using a grid-cell-based approach.</p>
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<p>Slope analysis of satellite-derived products (ALOS and SRTM) using grid cell analysis.</p>
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<p>Analyzing the TLS slope using a grid-cell-based approach.</p>
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<p>Aspect analysis of satellite-derived products (ALOS and SRTM).</p>
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<p>Analyzing the TLS aspect using a grid-cell-based approach.</p>
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<p>Comparison of satellites (SRTM and ALOS) with TLS measurements. (<b>a</b>) Elevation values, (<b>b</b>) slope values, and (<b>c</b>) aspect values for comparison of each model.</p>
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<p>Comparison of satellites (SRTM and ALOS) with TLS measurements. (<b>a</b>) Elevation values, (<b>b</b>) slope values, and (<b>c</b>) aspect values for comparison of each model.</p>
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13 pages, 10582 KiB  
Article
Analysis of Cracking of 7075 Aluminum Alloy High-Lock Nuts
by Quanshi Cheng, Lingying Ye, Shuai Wang, Qianwang Gao, Yongchun Xu, Yanwei Xu and Yajun Chen
Metals 2024, 14(12), 1427; https://doi.org/10.3390/met14121427 - 13 Dec 2024
Viewed by 257
Abstract
A 7075 aluminum alloy high-lock nut developed multiple cracks after 3 years of exposure to atmospheric conditions. To identify the root cause of the cracking, a comprehensive analysis was conducted, including chemical composition, macro- and micro-fracture analyses, microstructural analysis, mechanical performance verification, and [...] Read more.
A 7075 aluminum alloy high-lock nut developed multiple cracks after 3 years of exposure to atmospheric conditions. To identify the root cause of the cracking, a comprehensive analysis was conducted, including chemical composition, macro- and micro-fracture analyses, microstructural analysis, mechanical performance verification, and residual stress testing. The results indicated that stress corrosion was the cause of the fractures. After assembly, the crimping part of the high-lock nuts exhibited significant residual tensile stress and stress concentration, which led to stress corrosion in the industrial atmospheric environment. A comparison of the residual tensile stress in high-lock nuts with wall thicknesses of 0.75 mm, 1.00 mm, and 1.25 mm revealed that the residual tensile stress at the crimping part decreased as the wall thickness increased. Additionally, stress corrosion testing demonstrated that high-lock nuts with a wall thickness of 1.25 mm did not undergo stress corrosion within 30 days. Full article
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<p>Principle and process of X-ray residual stress measurement.</p>
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<p>Macroscopic appearance of the cracked high-lock nut: (<b>a</b>) macroscopic physical appearance of the cracked nut; (<b>b</b>) macroscopic appearance from the right-hand side; (<b>c</b>) macroscopic fracture surface morphology.</p>
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<p>Microscopic morphology of the fracture surface: (<b>a</b>) macroscopic fracture surface morphology; (<b>b</b>) morphology of zone A; (<b>c</b>) striations in zone A; (<b>d</b>) morphology of zone B; (<b>e</b>) morphology of zone C.</p>
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<p>Microscopic morphology of the fracture surface: (<b>a</b>) macroscopic fracture surface morphology; (<b>b</b>) morphology of zone A; (<b>c</b>) striations in zone A; (<b>d</b>) morphology of zone B; (<b>e</b>) morphology of zone C.</p>
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<p>Crack morphology and microstructural characteristics: (<b>a</b>) crack cross-section at 100×; (<b>b</b>) intergranular secondary crack at 500×; (<b>c</b>) longitudinal section of crack at 100×; (<b>d</b>) intergranular secondary crack at 500×.</p>
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<p>Crack morphology and microstructural characteristics: (<b>a</b>) crack cross-section at 100×; (<b>b</b>) intergranular secondary crack at 500×; (<b>c</b>) longitudinal section of crack at 100×; (<b>d</b>) intergranular secondary crack at 500×.</p>
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<p>Grain boundary and intragrain precipitates: (<b>a</b>) intragrain precipitates; (<b>b</b>) grain boundary precipitates.</p>
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<p>Maximum intensity of X-ray diffraction peaks determined from Ψ.</p>
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<p>Oxide film morphology on surface of the same batch of unused high-lock nuts: (<b>a</b>) at crimping position; (<b>b</b>) at non-crimping position.</p>
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<p>High-lock nut crimping schematic diagram: (<b>a</b>) crimping position; (<b>b</b>) crimping schematic diagram.</p>
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12 pages, 4121 KiB  
Article
The Impact of Silver Nanoparticles on Dentinal Tubule Penetration of Endodontic Bioceramic Sealer
by Sundus Bukhary, Sarah Alkahtany, Amal Almohaimede, Nourah Alkhayatt, Shahad Alsulaiman and Salma Alohali
Appl. Sci. 2024, 14(24), 11639; https://doi.org/10.3390/app142411639 - 12 Dec 2024
Viewed by 521
Abstract
The impact of adding silver nanoparticles (AgNPs) to bioceramic (BC) sealer on their ability to penetrate dentinal tubules is still unknown. Thus, this confocal laser scanning microscopic (CLSM) study aimed to assess the extent of dentinal tubule penetration of BC sealer (TotalFill® [...] Read more.
The impact of adding silver nanoparticles (AgNPs) to bioceramic (BC) sealer on their ability to penetrate dentinal tubules is still unknown. Thus, this confocal laser scanning microscopic (CLSM) study aimed to assess the extent of dentinal tubule penetration of BC sealer (TotalFill® Hiflow BC Sealer™, FKG, Switzerland) with and without AgNPs using the single-cone (SC) technique and the continuous-wave condensation (CWC) technique. AgNPs alone as well as in a mixture with the BC sealer were characterized using scanning electron microscopy and transmission electron microscopy. Single-rooted extracted human teeth (N = 100) were selected and prepared, and then divided into four groups (n = 25). Group 1 (BC/SC): BC sealer obturated with the SC technique. Group 2 (BC+AgNPs/SC): BC sealer with AgNPs obturated with the SC technique. Group 3 (BC/CWC): BC Sealer obturated with the CWC technique. Group 4 (BC+AgNPs/CWC): BC Sealer with AgNPs obturated with the CWC technique. After 2 weeks, roots were horizontally sectioned to obtain 1 mm thick dentin slices that were evaluated with CLSM. Sealer dentinal tubule penetration area and the maximum depth of penetration were measured. Data were analyzed with one-way ANOVA and the Tukey multiple comparison tests (p ≤ 0.05). The characterization process demonstrated a spherical-shaped nanoparticles without obvious agglomeration. The results showed that Group 2 (BC+AgNPs/SC) significantly demonstrated the highest mean tubular penetration depth, while group 3 (BC/CWC) had the lowest mean depth. Group 2 (BC+AgNPs/SC) exhibited the significantly highest mean value for the total area of penetration. However, groups 1 (BC/SC) and 3 (BC/CWC) exhibited the lowest mean value of total penetration area, with no statistically significant difference. The integration of AgNPs with BC sealer markedly enhanced penetration into dentinal tubules. The SC technique demonstrated superior penetration relative to the CWC technique. Full article
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<p>(<b>A</b>) Maximum penetration depth measurement; (<b>B</b>) total area of sealer penetration measurement. All images are shown at 5× magnification.</p>
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<p>(<b>A</b>) SEM image of AgNPs illustrating the spherical shape and size range (×200,000); (<b>B</b>) TEM image of AgNPs illustrates the spherical-shaped particles, as well as the absence of nanoparticles agglomeration (×300,000); (<b>C</b>) TEM image of AgNPs mixed with bioceramic sealer demonstrates the spherical shape of AgNPs precipitated within the structure of the sealer, with no obvious agglomeration (×150,000).</p>
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<p>The bar chart shows the mean ± standard deviations of the maximum depth of penetration (<b>A</b>) and total area of sealer penetration (<b>B</b>) of the experimental groups.</p>
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<p>Representative CLSM images showing the penetrability of the experimental sealers into dentinal tubules. (<b>A1</b>–<b>A4</b>) represent the BC+AgNPs/SC group, showing heavy and homogenous fluorescence, indicating great sealer penetration with long tags from the canal lumen toward the cementodentinal junction. (<b>B1</b>–<b>B4</b>) represent the BC+AgNPs/CWC group, showing sealer penetration through the dentinal tubules with long tags. (<b>C1</b>–<b>C4</b>) represent the BC/SC group, showing minimal sealer penetration into dentinal tubules with short tags. (<b>D1</b>–<b>D4</b>) represent the BC/CWC group, denoting hardly noticeable fluorescence, indicating minimal sealer penetration into dentinal tubules. All images are shown at 10× magnification. All bars represent 200 µm.</p>
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17 pages, 23276 KiB  
Article
Monitoring of Transformer Hotspot Temperature Using Support Vector Regression Combined with Wireless Mesh Networks
by Naming Zhang, Guozhi Zhao, Liangshuai Zou, Shuhong Wang and Shuya Ning
Energies 2024, 17(24), 6266; https://doi.org/10.3390/en17246266 - 12 Dec 2024
Viewed by 280
Abstract
The accurate monitoring of the internal hotspot temperature in transformers is crucial for ensuring the stability of power grid operations. Traditional methods typically measure only the surface temperature of transformers, whereas this study proposes a non-invasive thermal inversion algorithm based on a wireless [...] Read more.
The accurate monitoring of the internal hotspot temperature in transformers is crucial for ensuring the stability of power grid operations. Traditional methods typically measure only the surface temperature of transformers, whereas this study proposes a non-invasive thermal inversion algorithm based on a wireless mesh network that effectively predicts the internal hotspot temperature. An electromagnetic-thermal-fluid coupling simulation model was developed to simulate the temperature distribution in transformers under various operating conditions. Subsequently, this study employed a Support Vector Regression (SVR) algorithm to train the sample dataset, optimizing the SVR model using a grid search and cross-validation to enhance the predictive accuracy. After training, the model estimates the hotspot temperature based on surface measurements obtained through a non-contact infrared sensor network. The wireless mesh network, based on the Wi-Fi protocol, provides robust and real-time monitoring even in harsh environments, with data transmitted to a central root node via multiple sensor nodes. The experimental results demonstrate that this method is highly accurate, with predicted temperatures closely matching the results from traditional measurement techniques. This method enhances transformer condition monitoring, helping to extend the transformer lifespan and improve power grid stability. Full article
(This article belongs to the Section F: Electrical Engineering)
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<p>Framework of the proposed mesh network.</p>
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<p>Prototype of the sensor node.</p>
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<p>Flow diagram of the measurement procedure: (<b>a</b>) Sensor nodes; (<b>b</b>) Root node.</p>
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<p>Power transformer based on aluminum wire.</p>
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<p>Three-dimensional transformer model.</p>
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<p>Temperature distribution of transformer during no-load operation. (<b>a</b>) Temperature Distribution of the Core. (<b>b</b>) Temperature Distribution of the Windings.</p>
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<p>Temperature distribution of three-phase unbalanced operating transformers. (<b>a</b>) Temperature Distribution of the Core. (<b>b</b>) Temperature Distribution of the Windings.</p>
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<p>Temperature distribution of transformer under no-load conditions.</p>
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<p>Transformer temperature rise experimental platform. (A, B, C: The primary side three-phase windings of the transformer. N: The neutral point. a, b, c: The secondary side three-phase windings of the transformer).</p>
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<p>Temperature distribution of transformer under 0.3 times load conditions.</p>
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<p>Temperature distribution of transformers under three-phase unbalanced load conditions.</p>
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<p>SVR principle diagram.</p>
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<p>Position of Temperature Measurement Points.</p>
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<p>Process diagram for selecting characteristic temperature measurement points.</p>
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<p>Principal Component Eigenvalues and Cumulative Contribution Rate.</p>
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<p>GS-SVR algorithm flowchart.</p>
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12 pages, 588 KiB  
Article
Micropropagation of Robinia pseudoacacia L. Genotypes, Selected for Late Flowering Characteristics
by Doaa Elazab, Giancarlo Fascella, Claudia Ruta, Andrea Vitale and Maurizio Lambardi
Horticulturae 2024, 10(12), 1317; https://doi.org/10.3390/horticulturae10121317 - 11 Dec 2024
Viewed by 316
Abstract
Robinia pseudoacacia L., commonly known as black locust, is a nitrogen-fixing species characterized by multiple uses. Among these uses, black locust is of special interest to beekeepers due to its abundant flowering and delicious honey. Given the great importance of honey production in [...] Read more.
Robinia pseudoacacia L., commonly known as black locust, is a nitrogen-fixing species characterized by multiple uses. Among these uses, black locust is of special interest to beekeepers due to its abundant flowering and delicious honey. Given the great importance of honey production in Italy, beekeepers are looking for genotypes that have a delayed flowering time. As a consequence, the aim of the present study was to develop a complete protocol of micropropagation for genotypes, which have been selected in the Veneto region due to their delayed flowering, i.e., about 3 months, in comparison with the normal flowering time (from late April to early June). The subsequent steps of the micropropagation protocol (explant decontamination, shoot induction, proliferation, and rooting) were investigated and optimized. The most effective decontamination treatment of explants (axillary buds from shoots developed in a greenhouse) was obtained using 50 mg/L AgNO3 for 20 min. This method resulted in the highest survival and regeneration rates for the explants (90%), although contamination was slightly higher than when using HgCl2 and NaOCl. The best medium for shoot establishment was MS with 1 mg/L of mT, which achieved 100% regeneration of the explants. In comparison with BA, mT at 1 mg/L was shown to be the best stimulator of shoot proliferation, especially in combination with 0.7 mg/L GA3 (Proliferation Rate, 4.7). An intermediate 2 h treatment with AgNO3, in combination with mT, was shown to be beneficial in improving the shoot proliferation and quality in the subsequent subculture in a gelled medium. As for shoot rooting, the shoots that were pre-treated in NH4NO3-free and mT-free MS medium gave the highest ex vitro rooting percentage in a cell tray (80%) and the highest number of roots per shoot (3.6). This optimized protocol opens the door to the massive micropropagation of valuable genotypes of black locust selected for delayed flowering. This is an outcome of extraordinary importance for beekeepers. Full article
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<p>Sequence of steps in the micropropagation of <span class="html-italic">Robinia pseudoacacia</span> selected genotypes: (<b>a</b>) Large cuttings with dormant axillary buds, maintained in greenhouse at 20 °C. (<b>b</b>) Developed shoots used for the preparation of explants. (<b>c</b>) Initial development of the buds of <span class="html-italic">R. pseudoacacia</span> two weeks after planting. (<b>d</b>) Abundant callus formation caused by the highest concentrations of mT. (<b>e</b>) Excellent shoot proliferation following the liquid treatments with 0.025 mg/L AgNO<sub>3</sub>. (<b>f</b>) Rooted shoots from 120-cell trays ‘Riza Power’, which were pre-treated in NH<sub>4</sub>NO<sub>3</sub>-free MS medium.</p>
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18 pages, 2442 KiB  
Article
Biocontrol Potential of Endophytic Bacillus velezensis LSR7 Against Rubber Red Root Rot Disease
by Xiangjia Meng, Haibin Cai, Youhong Luo, Xinyang Zhao, Yongwei Fu, Lifang Zou, Yi Zhou and Min Tu
J. Fungi 2024, 10(12), 849; https://doi.org/10.3390/jof10120849 - 9 Dec 2024
Viewed by 612
Abstract
To obtain an effective bacterial biocontrol strain against the fungal pathogen Ganoderma pseudoferreum, causing rubber tree red root rot disease, healthy rubber tree tissue from Baisha County, Hainan Province, was selected as the isolation source, and bacterial strains with strong antifungal effects against [...] Read more.
To obtain an effective bacterial biocontrol strain against the fungal pathogen Ganoderma pseudoferreum, causing rubber tree red root rot disease, healthy rubber tree tissue from Baisha County, Hainan Province, was selected as the isolation source, and bacterial strains with strong antifungal effects against G. pseudoferreum were screened. The strain was identified by molecular biology, in vitro root segment tests, pot growth promotion tests, and genome detection. The strain was further evaluated by biological function tests, genome annotation analysis, and plant defense-related enzyme activity detection. The results show that strain LSR7 had good antagonistic effects against G. pseudoferreum, and the inhibition rate reached 88.49%. The strain LSR7 was identified as Bacillus velezensis by genome sequencing. In a greenhouse environment, LSR7 prevents and treats red root rot disease in rubber trees and promotes the growth of rubber tree seedlings. LSR7 secreted cell wall hydrolases (protease, glucanase, and cellulase), amylases, and siderophores. LSR7 also formed biofilms, facilitating plant colonization. Genome prediction showed that LSR7 secreted multiple antifungal lipopeptides. LSR7 enhanced rubber tree resistance to G. pseudoferreum by increasing the activity of defense enzymes. Bacillus velezensis LSR7 has biocontrol potential and is a candidate strain for controlling red root rot disease in rubber trees. Full article
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<p>LSR7 antifungal activity against <span class="html-italic">G. pseudoferreum</span> (inhibition rate: 88.49%). Bacterial cultures (<b>A</b>) and sterile water (<b>B</b>) were inoculated on the three-point symmetry of a fungal plug.</p>
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<p>Evaluation of <span class="html-italic">B. velezensis</span> LSR7 for the biocontrol of red root rot in rubber trees. P<sub>3</sub>~P<sub>1</sub>: 10<sup>8</sup>~10<sup>6</sup> CFU/mL of LSR7 + <span class="html-italic">G. pseudoferreum</span>, CK: NB + <span class="html-italic">G. pseudoferreum</span>, CK<sub>0</sub>: Only NB. Tridemorph: positive control. Biocontrol effectiveness of <span class="html-italic">B. velezensis</span> LSR7 on the roots of <span class="html-italic">Hevea brasiliensis</span> against red root rot under different treatments. RT-qPCR amplification curves (<b>A</b>) and melting curve (<b>C</b>) of <span class="html-italic">G. pseudoferreum</span> cDNA under different treatments. Biocontrol efficiencies of <span class="html-italic">B. velezensis</span> LSR7 were calculated according to the expression values of <span class="html-italic">ACT</span>. Infection of rubber tree by <span class="html-italic">G. pseudoferreum</span> under different treatments (<b>B</b>). The effect of different concentrations of LSR7 on red root rot disease of <span class="html-italic">Hevea brasiliensis</span> was calculated by means of relative lesion area (<b>D</b>) and relative gene expression (<b>E</b>). Numerical values represent the mean ± standard deviation of the triplicate experiments. Means were tested using Duncan’s multiple range test using the SPSS version 23 software. Means followed by the same letter within the same column are not significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of LSR7 on the rubber tree seedling growth (<b>A</b>,<b>B</b>) (n = 20). Effect of LSR7 on the rubber tree seedling height (<b>C</b>), root length (<b>D</b>), root dry weight (<b>E</b>), stem dry weight (<b>F</b>), chlorophyll content (<b>G</b>), and number of root systems (<b>H</b>). Bars indicate the standard error of the mean. Columns marked with the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, according to Duncan’s multiple range test. Q<sub>1~</sub>Q<sub>4</sub>: 10<sup>6</sup>~10<sup>9</sup> CFU/mL of LSR7, CK: NB.</p>
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<p>Detection of cell wall-degrading enzymes and siderophore (n = 15): (<b>a</b>). protease, (<b>b</b>). siderophore, (<b>c</b>). cellulase, (<b>d</b>). amylase, (<b>e</b>). β-1,3-glucanase, and (<b>f</b>). chitinase.</p>
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<p>Genome annotation of LSR7 and prediction of biosynthesis gene clusters (BGCs). Genomic information and chemical structure of BGCs compared to those of known BGCs.</p>
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<p>(<b>A</b>) ANIb and DDH values of LSR7 with 12 <span class="html-italic">Bacillus</span> strains. a. LSR7; b. <span class="html-italic">B. amyloliquefaciens</span> DSM7; c. <span class="html-italic">B. velezensis</span> FZB42; d. <span class="html-italic">B. cereus</span> ATCC 10987; e. <span class="html-italic">B. mojavensis</span> KCTC 3706; f. <span class="html-italic">B. siamensis</span> KCTC 13613; g. <span class="html-italic">B. spizizenii</span> ATCC 6633; h. <span class="html-italic">B. subtilis</span> ATCC 6051a; i. <span class="html-italic">B. tequilensis</span> KCTC 13622; j. <span class="html-italic">B. thuringiensis</span> LM1212; k. <span class="html-italic">B. velezensis</span> NJN-6; l. <span class="html-italic">B. subtilis</span> strain DSM 10. (<b>B</b>) Comparison of the secondary metabolite biosynthesis gene clusters of <span class="html-italic">B</span>. <span class="html-italic">velezensis</span> LSR7 with <span class="html-italic">B</span>. <span class="html-italic">velezensis</span> FZB42, <span class="html-italic">B</span>. <span class="html-italic">velezensis</span> SQR9, <span class="html-italic">B</span>. <span class="html-italic">amyloliquefaciens</span> DSM7, and <span class="html-italic">B</span>. <span class="html-italic">subtilis</span> DSM10.</p>
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<p>Effect of BCF amended to molten agar at different concentrations on the mycelial growth of <span class="html-italic">G. pseudoferreum</span> (<b>A</b>,<b>B</b>) (n = 15). Antifungal activity of BCF treated with different concentrations of protease K against <span class="html-italic">G. pseudoferreum</span> (<b>C</b>,<b>D</b>). Bars indicate the standard error of the mean. Columns marked with the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, considering Duncan’s multiple range test (<b>B</b>,<b>D</b>) (n = 15).</p>
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<p>Antifungal activity of LSR7 lipopeptide metabolites extracted by different organic solvents against <span class="html-italic">G. pseudoferreum</span> (<b>A,B</b>) (n = 15). Bars indicate the standard error of the mean. Columns marked with the same letter are not significantly different at <span class="html-italic">p &lt;</span> 0.05, considering Duncan’s multiple range test (<b>B</b>).</p>
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<p>Changes in (<b>A</b>) PAL, (<b>B</b>) POD, (<b>C</b>) CAT, (<b>D</b>) SOD, and (<b>E</b>) PPO activities in rubber tree seedling roots after LSR7 treatment (n = 20). M<sub>4</sub>~M<sub>1</sub>: 10<sup>9</sup>~10<sup>6</sup> CFU/mL of LSR7; CK: Hoagland’s nutrient solution without LSR7.</p>
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15 pages, 418 KiB  
Article
Variational Autoencoders-Based Algorithm for Multi-Criteria Recommendation Systems
by Salam Fraihat, Qusai Shambour, Mohammed Azmi Al-Betar and Sharif Naser Makhadmeh
Algorithms 2024, 17(12), 561; https://doi.org/10.3390/a17120561 - 8 Dec 2024
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Abstract
In recent years, recommender systems have become a crucial tool, assisting users in discovering and engaging with valuable information and services. Multi-criteria recommender systems have demonstrated significant value in assisting users to identify the most relevant items by considering various aspects of user [...] Read more.
In recent years, recommender systems have become a crucial tool, assisting users in discovering and engaging with valuable information and services. Multi-criteria recommender systems have demonstrated significant value in assisting users to identify the most relevant items by considering various aspects of user experiences. Deep learning (DL) models demonstrated outstanding performance across different domains: computer vision, natural language processing, image analysis, pattern recognition, and recommender systems. In this study, we introduce a deep learning model using VAE to improve multi-criteria recommendation systems. Specifically, we propose a variational autoencoder-based model for multi-criteria recommendation systems (VAE-MCRS). The VAE-MCRS model is sequentially trained across multiple criteria to uncover patterns that allow for better representation of user–item interactions. The VAE-MCRS model utilizes the latent features generated by the VAE in conjunction with user–item interactions to enhance recommendation accuracy and predict ratings for unrated items. Experiments carried out using the Yahoo! Movies multi-criteria dataset demonstrate that the proposed model surpasses other state-of-the-art recommendation algorithms, achieving a Mean Absolute Error (MAE) of 0.6038 and a Root Mean Squared Error (RMSE) of 0.7085, demonstrating its superior performance in providing more precise recommendations for multi-criteria recommendation tasks. Full article
(This article belongs to the Special Issue Algorithms for Complex Problems)
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<p>Architecture of variational autoencoder model.</p>
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<p>The proposed VAE-MCRS model architecture. R: Rating, C: Criterion, m: Movie, i: User.</p>
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<p>Yahoo dataset sample.</p>
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