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15 pages, 3317 KiB  
Article
Respiratory Virus-Specific and Time-Dependent Interference of Adenovirus Type 2, SARS-CoV-2 and Influenza Virus H1N1pdm09 During Viral Dual Co-Infection and Superinfection In Vitro
by Maria Alfreda Stincarelli, Rosaria Arvia, Bernardo Guidotti and Simone Giannecchini
Viruses 2024, 16(12), 1947; https://doi.org/10.3390/v16121947 - 19 Dec 2024
Viewed by 318
Abstract
Background. Understanding the interference patterns of respiratory viruses could be important for shedding light on potential strategies to combat these human infectious agents. Objective. To investigate the possible interactions between adenovirus type 2 (AdV2), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza [...] Read more.
Background. Understanding the interference patterns of respiratory viruses could be important for shedding light on potential strategies to combat these human infectious agents. Objective. To investigate the possible interactions between adenovirus type 2 (AdV2), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza A/H1N1 pandemic (H1N1pdm09) using the A549 cell line. Methods. Single infections, co-infections, and superinfections (at 3 and 24 h after the first virus infection) were performed by varying the multiplicity of infection (MOI). Virus replication kinetics and the mRNA expression of IFN-α, IL-1α and IL-6 were assessed by real-time qPCR. Results. Co-infection experiments showed different growth dynamics, depending on the presence of the specific virus and time. AdV2 replication remained stable or possibly enhanced in the presence of co-infection with each of the two H1N1pdm09 and SARS-CoV-2 viruses used. In contrast, SARS-CoV-2 replication was facilitated by H1N1pdm09 but hindered by AdV2, indicating possible different interactions. Finally, H1N1pdm09 replication exhibited variably effectiveness in the presence of AdV2 and SARS-CoV-2. Superinfection experiments showed that the replication of all viruses was affected by time and MOI. The mRNA expression of IFN-α, IL-1α and IL-6 showed divergent results depending on the virus used and the time of infection. Conclusions. Further investigation of co-infection or superinfection may be helpful in understanding the potential relationship involved in the outcome of viral respiratory infection in the human population. Full article
(This article belongs to the Section Human Virology and Viral Diseases)
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Figure 1

Figure 1
<p>Effect of co-infection on virus replication. A549 cells were co-infected with the combination of the two indicated viruses at multiplicity of infection (MOI) values of 0.1, 0.01 and 0.001. The upper panels report each individual viral replication at the indicated MOI. The lower panels report the viral replication of the indicate virus used at a fixed MOI of 0.01 in the presence of co-infection with one of the other viruses at three different MOIs (lower, equal and higher). The supernatant of the infected cells was collected after 24, 48 and 72 h post-infection (hpi) and used to extract RNA or DNA. One hundred nanograms of total RNA or DNA were amplified using primers and probes specific for AdV2, H1N1pdm09 and the genomic region of SARS-CoV-2, as reported in the <a href="#sec2-viruses-16-01947" class="html-sec">Section 2</a>. Amplification of a specific viral target in the co-infection is indicated with a different color (black and red) and using the same symbol as the related virus in the single infection. The kinetics of viral growth was obtained by comparing the ct values of each virus used in the co-infection with the ct values of the same virus used in the single infection at each time following infection. The values reported are the mean + standard deviation obtained in 3 independent experiments. Virus co-infection with significant differences from the single infection is highlighted in bold. * <span class="html-italic">p</span> &lt; 0.05, Student’s <span class="html-italic">t</span>-test).</p>
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<p>Effect of superinfection on viral replication. A549 cells were infected with a first virus at a multiplicity of infection (MOI) of 0.01. Then, after 3 hpi (<b>A</b>) or 24 hpi (<b>B</b>), a second infection was performed with viral inoculum at three indicated MOIs and prepared under the same conditions as described for the first infection. In (<b>A</b>,<b>B</b>), the upper panels show each individual virus replication at the indicated MOI, which was performed as described in the <a href="#sec2-viruses-16-01947" class="html-sec">Section 2</a>. In addition, a schematic of the superinfection virus addition and temporal sampling is shown. The lower panels report viral replication of the indicated virus used at a fixed MOI of 0.01 in the presence of co-infection with one of the other viruses performed at three different MOIs (lower, equal and higher). The supernatant of the infected cells was collected at 3, 24 and 48 hpi after infection (panel <b>A</b>, superinfection performed at 3 hpi after initial infection) or 24, 48 and 72 hpi after infection (panel <b>B</b>, superinfection performed at 24 hpi after initial infection) and used for RNA or DNA extraction. One hundred nanograms of total RNA or DNA was amplified using primers and probes specific for AdV2, H1N1pdm09 and the genomic region of SARS-CoV-2 as reported in the <a href="#sec2-viruses-16-01947" class="html-sec">Section 2</a>. Amplification of a specific viral target in the superinfection is shown in different colors (black and red) and with the same symbol as the corresponding virus in the song. The kinetic of viral growth was obtained comparing ct values of each virus used in superinfection to ct values of the same virus used in single infection at each time post-infection. Values shown are mean + standard deviation obtained in 3 independent experiments. Virus co-infection with significant difference compared to single infection is highlighted in bold. * <span class="html-italic">p</span> &lt; 0.05, Student’s <span class="html-italic">t</span>-test.</p>
Full article ">Figure 2 Cont.
<p>Effect of superinfection on viral replication. A549 cells were infected with a first virus at a multiplicity of infection (MOI) of 0.01. Then, after 3 hpi (<b>A</b>) or 24 hpi (<b>B</b>), a second infection was performed with viral inoculum at three indicated MOIs and prepared under the same conditions as described for the first infection. In (<b>A</b>,<b>B</b>), the upper panels show each individual virus replication at the indicated MOI, which was performed as described in the <a href="#sec2-viruses-16-01947" class="html-sec">Section 2</a>. In addition, a schematic of the superinfection virus addition and temporal sampling is shown. The lower panels report viral replication of the indicated virus used at a fixed MOI of 0.01 in the presence of co-infection with one of the other viruses performed at three different MOIs (lower, equal and higher). The supernatant of the infected cells was collected at 3, 24 and 48 hpi after infection (panel <b>A</b>, superinfection performed at 3 hpi after initial infection) or 24, 48 and 72 hpi after infection (panel <b>B</b>, superinfection performed at 24 hpi after initial infection) and used for RNA or DNA extraction. One hundred nanograms of total RNA or DNA was amplified using primers and probes specific for AdV2, H1N1pdm09 and the genomic region of SARS-CoV-2 as reported in the <a href="#sec2-viruses-16-01947" class="html-sec">Section 2</a>. Amplification of a specific viral target in the superinfection is shown in different colors (black and red) and with the same symbol as the corresponding virus in the song. The kinetic of viral growth was obtained comparing ct values of each virus used in superinfection to ct values of the same virus used in single infection at each time post-infection. Values shown are mean + standard deviation obtained in 3 independent experiments. Virus co-infection with significant difference compared to single infection is highlighted in bold. * <span class="html-italic">p</span> &lt; 0.05, Student’s <span class="html-italic">t</span>-test.</p>
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<p>Expression of cellular innate immune response gene transcription during co-infection at different endpoints. A549 cells were co-infected with the combination of the two indicated viruses at a multiplicity of infection (MOI) of 0.01. The infected cells were collected 3 and 24 h after infection and used to extract RNA. One hundred nanograms of total RNA were amplified using primers and probes specific for interleukin-1 alpha (IL-1α), interferon-alpha (IFN-α) and interleukin-6 (IL-6). The mRNA expression levels of interleukin-1 (IL-1α), interferon-alpha (IFN-α) and interleukin-6 (IL-6) as indicators of cellular innate immune response were measured at 3 and 24 h after infection. The expression of selected genes in three independent co-infected cultures was visualized as a fold change compared with sham-infected cultures and cells infected with a single virus using the ΔΔCt method. The mRNA expression of target genes was normalized to 18S gene expression. Values reported are the average obtained in 3 independent experiments. Cytokine mRNA expression between co-infection and single infection with significant differences (solid line <span class="html-italic">p</span> &lt; 0.05, dashed line <span class="html-italic">p</span> &lt; 0.01, Student’s <span class="html-italic">t</span>-test) is reported.</p>
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<p>Expression of cellular innate immune response gene transcription during superinfection at different endpoints. A549 cells were infected with a first virus at a multiplicity of infection (MOI) of 0.01. Then, after 3 or 24 h, the second infection was performed at a multiplicity of infection (MOI) of 0.01. Superinfection experiments performed at 3 hpi (<b>A</b>) and 24 hpi (<b>B</b>) with different combinations of H1N1, SARS-CoV-2 and AdV2 are reported. Infected cells were collected after 3 and 24 hpi and used to extract RNA. One hundred nanograms of total RNA were amplified using primers and probes specific for interleukin-1 (IL-1α), interferon-alpha (IFN-α), and interleukin-6 (IL-6) The mRNA expression levels of interleukin-1 (IL-1α), interferon-alpha (IFN-α), and interleukin-6 (IL-6) were measured at 3 and 24 hpi after the first infection. The expression of selected genes in three independent superinfected cultures was visualized as fold change compared with mock-infected cultures and cells infected with a single virus using the ΔΔCt method. Target gene expression was normalized to 18S gene expression. Values reported are the average obtained in 3 independent experiments. Cytokine mRNA expression between superinfection and single infection with significant differences (solid line <span class="html-italic">p</span> &lt; 0.05, dashed line <span class="html-italic">p</span> &lt; 0.01, Student’s <span class="html-italic">t</span>-test) is reported.</p>
Full article ">Figure 4 Cont.
<p>Expression of cellular innate immune response gene transcription during superinfection at different endpoints. A549 cells were infected with a first virus at a multiplicity of infection (MOI) of 0.01. Then, after 3 or 24 h, the second infection was performed at a multiplicity of infection (MOI) of 0.01. Superinfection experiments performed at 3 hpi (<b>A</b>) and 24 hpi (<b>B</b>) with different combinations of H1N1, SARS-CoV-2 and AdV2 are reported. Infected cells were collected after 3 and 24 hpi and used to extract RNA. One hundred nanograms of total RNA were amplified using primers and probes specific for interleukin-1 (IL-1α), interferon-alpha (IFN-α), and interleukin-6 (IL-6) The mRNA expression levels of interleukin-1 (IL-1α), interferon-alpha (IFN-α), and interleukin-6 (IL-6) were measured at 3 and 24 hpi after the first infection. The expression of selected genes in three independent superinfected cultures was visualized as fold change compared with mock-infected cultures and cells infected with a single virus using the ΔΔCt method. Target gene expression was normalized to 18S gene expression. Values reported are the average obtained in 3 independent experiments. Cytokine mRNA expression between superinfection and single infection with significant differences (solid line <span class="html-italic">p</span> &lt; 0.05, dashed line <span class="html-italic">p</span> &lt; 0.01, Student’s <span class="html-italic">t</span>-test) is reported.</p>
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19 pages, 7793 KiB  
Article
A Ratiometric Fluorescence Method Based on PCN-224-DABA for the Detection of Se(IV) and Fe(III)
by Mao-Ling Luo, Guo-Ying Chen, Wen-Jia Li, Jia-Xin Li, Tong-Qing Chai, Zheng-Ming Qian and Feng-Qing Yang
Biosensors 2024, 14(12), 626; https://doi.org/10.3390/bios14120626 - 19 Dec 2024
Viewed by 298
Abstract
In this study, 3,4-diaminobenzoic acid (DABA) was introduced into the porphyrin metal–organic framework (PCN-224) for the first time to prepare a ratiometric fluorescent probe (PCN-224-DABA) to quantitatively detect ferric iron (Fe(III)) and selenium (IV) (Se(IV)). The fluorescence attributed to the DABA of PCN-224-DABA [...] Read more.
In this study, 3,4-diaminobenzoic acid (DABA) was introduced into the porphyrin metal–organic framework (PCN-224) for the first time to prepare a ratiometric fluorescent probe (PCN-224-DABA) to quantitatively detect ferric iron (Fe(III)) and selenium (IV) (Se(IV)). The fluorescence attributed to the DABA of PCN-224-DABA at 345 nm can be selectively quenched by Fe(III) and Se(IV), but the fluorescence emission peak attributed to tetrakis (4-carboxyphenyl) porphyrin (TCPP) at 475 nm will not be disturbed. Therefore, the ratio of I345nm/I475nm with an excitation wavelength of 270 nm can be designed to determine Fe(III) and Se(IV). After the experimental parameters were systematically optimized, the developed method shows good selectivity and interference resistance for Fe(III) and Se(IV) detection, and has good linearity in the ranges of 0.01–4 μM and 0.01–15 μM for Fe(III) and Se(IV) with a limit of detection of 0.045 μM and 0.804 μM, respectively. Furthermore, the quenching pattern was investigated through the Stern–Volmer equation, and the results suggest that both Se(IV) and Fe(III) quenched on PCN-224-DABA can be attributed to the dynamic quenching. Finally, the constructed ratiometric fluorescent probe was applied in the spiked detection of lake water samples, which shows good applicability in real sample analysis. Moreover, the Fe(III) and Se(IV) contents in spinach and selenium-enriched rice were determined, respectively. Full article
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Figure 1
<p>Schematic of the preparation of PCN-224-DABA and its applications in the determination of Se(IV) and Fe(III).</p>
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<p>(<b>A</b>,<b>B</b>) SEM and (<b>C</b>) TEM images, and (<b>D</b>) the element mapping of PCN-224-DABA; (<b>E</b>) FT-IR spectra of (a) DABA, (b) TCPP, (c) PCN-224, and (d) PCN-224-DABA; XPS spectra of (<b>F</b>) PCN-224-DABA, (<b>G</b>) C 1s, (<b>H</b>) O 1s, (<b>I</b>) N 1s, and (<b>J</b>) Zr 3d.</p>
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<p>Fluorescence emission spectra of different systems at (<b>A</b>,<b>B</b>) pH = 1 and (<b>C</b>,<b>D</b>) pH = 2.</p>
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<p>Stern–Volmer diagram of (<b>A</b>) PCN-224-DABA + Se(IV) and (<b>B</b>) PCN-224-DABA + Fe(III); emission spectrum of PCN-224-DABA with different concentrations of (<b>C</b>) Se(IV) and (<b>D</b>) Fe(III).</p>
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<p>SEM images of PCN-224-DABA with (<b>A</b>) Tris-HCl (pH = 1), (<b>B</b>) Se(IV), (<b>F</b>) Tris-HCl (pH = 2.0), and (<b>G</b>) Fe(III); TEM images of PCN-224-DABA with (<b>C</b>–<b>E</b>) Se(IV) and (<b>H</b>,<b>I</b>) with Fe(III).</p>
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<p>(<b>A</b>) FT-IR and (<b>B</b>) XPS spectra of PCN-224-DABA (a), PCN-224-DABA + Se(IV) (b), and PCN-224-DABA + Fe(III) (c); XPS spectra of (<b>C</b>) N 1s, (<b>D</b>) C 1s, (<b>E</b>) O 1s, and (<b>F</b>) Zr 3d of PCN-224-DABA (a), PCN-224-DABA + Se(IV) (b), and PCN-224-DABA + Fe(III) (c); XPS spectra of (<b>G</b>) Se 3d and (<b>H</b>) Fe 2p.</p>
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<p>The effects of (<b>A</b>) pH, (<b>B</b>) temperature, and (<b>C</b>) reaction time on the detection of Se(IV); (<b>D</b>) fluorescence spectra of the reaction system with different concentrations of Se(IV) and (<b>E</b>,<b>F</b>) corresponding scatter plots.</p>
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<p>The effects of (<b>A</b>) pH, (<b>B</b>) temperature, and (<b>C</b>) reaction time on the detection of Fe(III); (<b>D</b>) fluorescence spectra of the reaction system with different concentrations of Fe(III) and (<b>E</b>,<b>F</b>) corresponding scatter plots.</p>
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<p>Selectivity and interference study of the ratiometric fluorescence method based on PCN-224-DABA for (<b>A</b>,<b>B</b>) Se(IV) and (<b>C</b>–<b>E</b>) Fe(III) detection.</p>
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19 pages, 9326 KiB  
Article
U-Net Driven High-Resolution Complex Field Information Prediction in Single-Shot Four-Step Phase-Shifted Digital Holography Using Polarization Camera
by Askari Mehdi, Yongjun Lim, Kwan-Jung Oh and Jae-Hyeung Park
Photonics 2024, 11(12), 1172; https://doi.org/10.3390/photonics11121172 - 12 Dec 2024
Viewed by 596
Abstract
We present a novel high-resolution complex field extraction technique utilizing U-Net-based architecture to effectively overcome the inherent resolution limitations of polarization cameras with micro-polarized arrays. Our method extracts high-resolution complex field information, achieving a resolution comparable to that of the original polarization camera. [...] Read more.
We present a novel high-resolution complex field extraction technique utilizing U-Net-based architecture to effectively overcome the inherent resolution limitations of polarization cameras with micro-polarized arrays. Our method extracts high-resolution complex field information, achieving a resolution comparable to that of the original polarization camera. Utilizing the parallel phase-shifting digital holography technique, we extracted high-resolution complex field information from four high-resolution phase-shifted interference patterns predicted by our network directly at the hologram plane. Extracting the object’s complex field directly at the hologram plane rather than the object’s plane, our method eliminates the dependency on numerical propagation during dataset acquisition, enabling reconstruction of objects at various depths without DC and conjugate noise. By training the network with real-valued interference patterns and using only a single pair of low- and high-resolution input and ground truth interference patterns, we simplify computational complexity and improve efficiency. Our simulations demonstrate the network’s robustness to variations in random phase distributions and transverse shifts in the input patterns. The effectiveness of the proposed method is demonstrated through numerical simulations, showing an average improvement of over 4 dB in peak-signal-to-noise ratio and 25% in intensity normalized cross-correlation metrics for object reconstruction quality. Full article
(This article belongs to the Special Issue Holographic Information Processing)
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<p>Schematic diagram of process flow of the proposed method.</p>
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<p>Decimation and interpolation scheme used in the training stage of the proposed method. The equation for the calculation of complex fields for the respective set of interference patterns is indicated below each group.</p>
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<p>Generation flow of training input and ground truth data.</p>
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<p>U-Net-based regression network architecture.</p>
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<p>(<b>a</b>) Training stage: a single image pair of low and high resolution from the training dataset is used. (<b>b</b>) Prediction stage: the same network is used to predict all four HR interference patterns.</p>
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<p>Amplitude and phase representation of complex field calculated from low-, predicted high-, and high-resolution phase-shifted interference patterns.</p>
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<p>Detailed flow diagram illustrating the proposed methodology step-by-step for predicting high-resolution complex field from the target images in given dataset.</p>
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<p>Low-, predicted high-, and high-resolution zero phase-shifted interference patterns with (<b>a</b>) different random phase distribution and (<b>b</b>) different transverse shifts applied to the same target image.</p>
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<p>Amplitude and phase of the object’s complex field and its image reconstruction in the following row for two test images in (<b>a</b>,<b>b</b>), and a comparison between low-, predicted high-, and high-resolution image reconstruction using the proposed method.</p>
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<p>Image reconstruction at different depths from the hologram plane for low, predicted high-, and high-resolution complex field information.</p>
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<p>Amplitude and phase of the object’s complex field and its image reconstruction in the following row for larger input image size generated from the FMNIST dataset and a comparison between low-, predicted high-, and high-resolution image reconstruction using the proposed method.</p>
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<p>Target input image in the first row of size 4416 × 4692. (<b>a</b>) Amplitude and phase of the object’s complex field and its image reconstruction in the top and bottom row for the USAF target resolution comparing low-, predicted high-, and high-resolution reconstructions with (<b>b</b>) zoomed-in images comparing low- and high-resolution (using proposed method) object reconstructions in red and yellow boxes for better visualization.</p>
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17 pages, 5586 KiB  
Article
Research on Fault Diagnosis Method of Reciprocating Compressor Based on RSSD and Optimized Parameter RCMDE
by Fengxia Lyu, Xueping Ding, Qianqian Li, Suzhen Chen, Siyi Zhang, Xinyue Huang and Wenqing Huang
Appl. Sci. 2024, 14(24), 11556; https://doi.org/10.3390/app142411556 - 11 Dec 2024
Viewed by 390
Abstract
As for the fault diagnosis process of a reciprocating compressor, vibration signals are often non-stationary, nonlinear, and multi-coupled, which makes it difficult to conduct effective fault information extraction. In this paper, a method based on optimized resonance-based sparse signal decomposition (RSSD) and refined [...] Read more.
As for the fault diagnosis process of a reciprocating compressor, vibration signals are often non-stationary, nonlinear, and multi-coupled, which makes it difficult to conduct effective fault information extraction. In this paper, a method based on optimized resonance-based sparse signal decomposition (RSSD) and refined composite multiscale dispersion entropy (RCMDE) is proposed. The quality factors in RSSD are optimized by atom search optimization (ASO) primarily, then the optimal quality factors are applied to the RSSD of reciprocating compressor fault signals. The noise interference in the original vibration signal can be effectively distinguished from the low resonance component after decomposition. The genetic algorithm (GA) is employed to optimize the core parameters of RCMDE. Finally, the RCMDE of the low-resonance component is extracted as the eigenvalue for pattern recognition. The experimental study illustrates that the spring failure, valve wear, and normal valve conditions of reciprocating compressors can be effectively distinguished by the proposed method. Full article
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<p>Flowchart of fault diagnosis.</p>
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<p>Time-domain contrast diagram of air valve simulation signal before and after adding noise: (<b>a</b>) Time domain of the simulation signal; (<b>b</b>) Time domain of the synthetic simulation signal; (<b>c</b>) The envelope spectrum of the synthetic simulation.</p>
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<p>The decomposition results of synthetic simulation signal: (<b>a</b>) The processing of result of ASO-RSSD; (<b>b</b>) The processing of result of RSSD.</p>
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<p>The envelope spectrum of three signals: (<b>a</b>) The envelope spectrum of the low-resonance component of ASO-RSSD; (<b>b</b>) The envelope spectrum of the original valve failure simulation signal; (<b>c</b>) The envelope spectrum of the low-resonance component of RSSD; (<b>d</b>) The envelope spectrum of the signal processed by VMD.</p>
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<p>The envelope spectrum of three signals: (<b>a</b>) The envelope spectrum of the low-resonance component of ASO-RSSD; (<b>b</b>) The envelope spectrum of the original valve failure simulation signal; (<b>c</b>) The envelope spectrum of the low-resonance component of RSSD; (<b>d</b>) The envelope spectrum of the signal processed by VMD.</p>
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<p>Fault diagnosis test bench for reciprocating compressor.</p>
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<p>Details of valves in three different states.</p>
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<p>Time-domain waveforms of vibration signals of reciprocating compressors under three working conditions: (<b>a</b>) Time-domain signal of normal valve; (<b>b</b>) Time-domain signal of valve wear; (<b>c</b>) Time-domain signal of spring failure.</p>
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<p>The RSSD results of vibration signals of reciprocating compressor under three working conditions: (<b>a</b>) RSSD results of the normal valve; (<b>b</b>) RSSD results of the valve wear; (<b>c</b>) RSSD results of the spring failure.</p>
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<p>Comparison of RCMDE with parameter optimization and RCMDE without parameter optimization of each working condition with scale factors 1~11: (<b>a</b>) RCMDE with parameter optimization; (<b>b</b>) RCMDE without parameter optimization; (<b>c</b>) Comparison of attribute value under scale factor 1 condition.</p>
Full article ">Figure 9 Cont.
<p>Comparison of RCMDE with parameter optimization and RCMDE without parameter optimization of each working condition with scale factors 1~11: (<b>a</b>) RCMDE with parameter optimization; (<b>b</b>) RCMDE without parameter optimization; (<b>c</b>) Comparison of attribute value under scale factor 1 condition.</p>
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<p>Fault identification results: (<b>a</b>) The recognition result of GA-optimized RCMDE; (<b>b</b>) The recognition result of RCMDE without GA optimization; (<b>c</b>) The recognition result of MSE; (<b>d</b>) The recognition result of MPE.</p>
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20 pages, 4121 KiB  
Article
Thermal Patterns at the Campi Flegrei Caldera Inferred from Satellite Data and Independent Component Analysis
by Francesco Mercogliano, Andrea Barone, Luca D’Auria, Raffaele Castaldo, Malvina Silvestri, Eliana Bellucci Sessa, Teresa Caputo, Daniela Stroppiana, Stefano Caliro, Carmine Minopoli, Rosario Avino and Pietro Tizzani
Remote Sens. 2024, 16(23), 4615; https://doi.org/10.3390/rs16234615 - 9 Dec 2024
Viewed by 528
Abstract
In volcanic regions, the analysis of Thermal InfraRed (TIR) satellite imagery for Land Surface Temperature (LST) retrieval is a valid technique to detect ground thermal anomalies. This allows us to achieve rapid characterization of the shallow thermal field, supporting ground surveillance networks in [...] Read more.
In volcanic regions, the analysis of Thermal InfraRed (TIR) satellite imagery for Land Surface Temperature (LST) retrieval is a valid technique to detect ground thermal anomalies. This allows us to achieve rapid characterization of the shallow thermal field, supporting ground surveillance networks in monitoring volcanic activity. However, surface temperature can be influenced by processes of different natures, which interact and mutually interfere, making it challenging to interpret the spatio-temporal variations in the LST parameter. In this paper, we use a workflow to detect the main thermal patterns in active volcanic areas by analyzing the Independent Component Analysis (ICA) results applied to satellite nighttime TIR imagery time series. We employed the proposed approach to study the surface temperature distribution at the Campi Flegrei caldera volcanic site (Southern Italy, Naples) during the 2013–2022 time interval. The results revealed the contribution of four main distinctive thermal patterns, which reflect the endogenous processes occurring at the Solfatara crater, the environmental processes affecting the Agnano plain, the unique microclimate of the Astroni crater, and the morphoclimatic aspects of the entire volcanic area. Full article
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<p>Developed workflow. Operative flowchart used in this work to identify the main thermal patterns of an investigated area.</p>
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<p>Campi Flegrei caldera. Painted relief map with the main structural features (black dashed lines) of the Campi Flegrei caldera redrawn from [<a href="#B65-remotesensing-16-04615" class="html-bibr">65</a>]. The blue box highlights the Area Of Interest (AOI) of this work. The geographic location map is reported in the upper right corner box.</p>
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<p>LST time series analysis for the investigated area from 2013 to 2022. Temporal variations of (<b>a</b>) the processed LST dataset, (<b>b</b>) the retrieved seasonal trend, and (<b>c</b>) the detrended LST dataset. Grey dots indicate the temperature values at each pixel of the considered area, while blue dots are the mean values; blue continuous lines express the interpolated trend using mean values.</p>
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<p>Mean LST map. Detrended mean LST map of the investigated area during the entire considered time period, 2013–2022, superimposed on the structural map redrawn from [<a href="#B65-remotesensing-16-04615" class="html-bibr">65</a>].</p>
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<p>Results of the L-curve method. Analysis of the residuals against the number of components (black crosses); the black dashed lines indicate different slope trends in the L-curve, while the red arrow shows the point where the L-curve has its maximum curvature. The residuals (<span class="html-italic">y</span>-axis) are computed as the sum of the squares of the differences between the input dataset and the decomposed one with respect to the number of considered components.</p>
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<p>Independent Component Analysis (ICA) results. Maps of the normalized spatial patterns of the four retrieved ICs superimposed on the AOI structural map redrawn from [<a href="#B65-remotesensing-16-04615" class="html-bibr">65</a>]. The mapped values indicate the correlation among the different subregions of the analyzed area: (<b>a</b>) first retrieved IC (IC1); (<b>b</b>) second retrieved IC (IC2); (<b>c</b>) third retrieved IC (IC3); and (<b>d</b>) fourth retrieved IC (IC4).</p>
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<p>Comparison of the retrieved IC with other datasets. Comparing the retrieved IC1 thermal field (blue dots) and its best-fit fourth-order polynomial trend (blue continuous line) with (<b>a</b>) the ground-based temperature trend (red continuous line), (<b>b</b>) the seismicity probability density function (green continuous line), (<b>c</b>) the cGPS-derived vertical deformation rate (orange dots), and its best-fit fourth-order polynomial trend (orange continuous line). (<b>d</b>) Comparison of the interpolated trend (blue continuous line) of the mean IC2 thermal field (blue dots) and the median water table level changes recorded at the Agnano plain (cyan continuous line). (<b>e</b>) Correlation plot between the retrieved IC4 spatial pattern and the related altitude; the orange line points out the best-fit linear regression line.</p>
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20 pages, 5610 KiB  
Article
Graph Neural Network (GNN) for Joint Detection–Decoder MAP–LDPC in Bit-Patterned Media Recording Systems
by Thien An Nguyen and Jaejin Lee
Electronics 2024, 13(23), 4811; https://doi.org/10.3390/electronics13234811 - 5 Dec 2024
Viewed by 528
Abstract
With its high area density, bit-patterned media recording (BPMR) is emerging as a leading technology for next-generation storage systems. However, as area density increases, magnetic islands are positioned closer together, causing significant two-dimensional (2D) interference. To address this, detection methods are used to [...] Read more.
With its high area density, bit-patterned media recording (BPMR) is emerging as a leading technology for next-generation storage systems. However, as area density increases, magnetic islands are positioned closer together, causing significant two-dimensional (2D) interference. To address this, detection methods are used to interpret the received signal and mitigate 2D interference. Recently, the maximum a posteriori (MAP) detection algorithm has shown promise in improving BPMR performance, though it requires extrinsic information to effectively reduce interference. In this paper, to solve the 2D interference and improve the performance of BPMR systems, a model using low-density parity-check (LDPC) coding was introduced to supply the MAP detector with the needed extrinsic information, enhancing detection in a joint decoding model we call MAP–LDPC. Additionally, leveraging similarities between LDPC codes and graph neural networks (GNNs), we replace the traditional sum–product algorithm in LDPC decoding with a GNN, creating a new model, MAP–GNN. The simulation results demonstrate that MAP–GNN achieves superior performance, particularly when using the deep learning-based GNN approach over conventional techniques. Full article
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<p>Estimated model of the equalizer and GPR target.</p>
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<p>Diagram of Serial MAP detection.</p>
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<p>Bipartite graph from matrix <b>H</b>.</p>
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<p>Principle of GNN according to message-passing mechanism.</p>
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<p>Diagram of the BPMR system in the simulation.</p>
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<p>GNN on bipartite graph.</p>
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<p>Structure of MLP.</p>
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<p>BER performance of the proposed model without feedback, media noise and TMR effect.</p>
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<p><b>H</b> matrix of (839/930) LDPC.</p>
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<p>BER performance of the BPMR systems when using feedback between detection and decoder.</p>
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<p>BER performance according to TMR effect at 13 dB.</p>
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<p>BER performance according to position fluctuation at 13 dB.</p>
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<p>BER performance with channel added 6% position fluctuation and 10% TMR effect.</p>
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<p>BER performance with channel added 8% position fluctuation and 12% TMR effect.</p>
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<p>BER performance with channel added 10% position fluctuation and 14% TMR effect.</p>
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16 pages, 2031 KiB  
Article
Downlink Non-Orthogonal Multiple Access Power Allocation Algorithm Based on Double Deep Q Network for Ensuring User’s Quality of Service
by Ying Lin, Xingbo Gong, Yongwei Xiong, Haomin Li and Xiangcheng Wang
Symmetry 2024, 16(12), 1613; https://doi.org/10.3390/sym16121613 - 5 Dec 2024
Viewed by 433
Abstract
Non-orthogonal multiple access (NOMA) provides higher spectral efficiency and access to more users than orthogonal multiple access. However, the issue of resource allocation in NOMA is dynamic and produces a high computation burden when using traditional methods. In this paper, a symmetry-aware double [...] Read more.
Non-orthogonal multiple access (NOMA) provides higher spectral efficiency and access to more users than orthogonal multiple access. However, the issue of resource allocation in NOMA is dynamic and produces a high computation burden when using traditional methods. In this paper, a symmetry-aware double deep Q network (DDQN) algorithm in deep reinforcement learning is employed to allocate power to users in NOMA while guaranteeing quality of service for the weakest users. The research process is divided into two parts. Firstly, users in the communication system are grouped using a method that synergistically considers gain difference and similarity, exploiting symmetrical properties within the user groups. Secondly, the DDQN algorithm is used to allocate power to multiple users in a NOMA system, which utilizes the inherent symmetry in the signal-to-interference noise ratio of each user as an objective function. By recognizing and leveraging these symmetrical patterns, the algorithm can dynamically adjust the power allocation to optimize system performance. Finally, the proposed algorithm is compared with conventional NOMA power allocation algorithms and shows significant improvements in system performance. The results of the convergence function show that the algorithm proposed in this paper can converge in approximately 1800 iterations, which effectively solves the problem of large arithmetic and complex processes existing in the traditional method. Full article
(This article belongs to the Section Computer)
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<p>Schematic diagram of system model.</p>
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<p>DDQN-based NOMA power allocation algorithm.</p>
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<p>Relationship between reward function, loss function, and the number of iterations.</p>
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<p>Relationship between the number of iterations and a user’s SINR in downlink two-user NOMA scenarios.</p>
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<p>Comparison of DDQN algorithm with Q-tab algorithm.</p>
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<p>Relationship between the number of iterations and SINR in NOMA system with 6-users.</p>
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<p>Variation of channel rate with power for NOMA and OMA systems.</p>
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<p>Channel capacity comparison of different algorithms.</p>
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<p>Convergence of the algorithm at different learning rates.</p>
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19 pages, 7948 KiB  
Article
New Approaches to Determining the D/H Ratio in Aqueous Media Based on Diffuse Laser Light Scattering for Promising Application in Deuterium-Depleted Water Analysis in Antitumor Therapy
by Anton V. Syroeshkin, Elena V. Uspenskaya, Olga V. Levitskaya, Ekaterina S. Kuzmina, Ilaha V. Kazimova, Hoang Thi Ngoc Quynh and Tatiana V. Pleteneva
Sci. Pharm. 2024, 92(4), 63; https://doi.org/10.3390/scipharm92040063 - 2 Dec 2024
Viewed by 493
Abstract
The development of affordable and reliable methods for quantitative determination of stable atomic nuclei in aqueous solutions and adjuvant agents used in tumor chemotherapy is an important task in modern pharmaceutical chemistry. This work quantified the deuterium/prothium isotope ratio in aqueous solutions through [...] Read more.
The development of affordable and reliable methods for quantitative determination of stable atomic nuclei in aqueous solutions and adjuvant agents used in tumor chemotherapy is an important task in modern pharmaceutical chemistry. This work quantified the deuterium/prothium isotope ratio in aqueous solutions through an original two-dimensional diffuse laser scattering (2D-DLS) software and hardware system based on chemometric processing of discrete interference patterns (dynamic speckle patterns). For this purpose, 10 mathematical descriptors (di), similar to QSAR descriptors, were used. Correlation analysis of bivariate “log di—D/H” plots shows an individual set of multi-descriptors for a given sample with a given D/H ratio (ppm). A diagnostic sign (DS) of differentiation was established: the samples were considered homeomorphic if 6 out of 10 descriptors differed by less than 15% (n ≥ 180). The analytical range (r = 0.987) between the upper (D/H ≤ 2 ppm) and lower (D/H = 180 ppm) limits for the quantification of stable hydrogen nuclei in water and aqueous solutions were established. Using the Spirotox method, a «safe zone» for protozoan survival was determined between 50 and 130 ppm D/H. Here, we discuss the dispersive (DLS, LALLS) and optical properties (refractive index, optical rotation angle) of the solutions with different D/H ratios that define the diffuse laser radiation due to surface density inhomogeneities. The obtained findings may pave the way for the future use of a portable, in situ diffuse laser light scattering instrument to determine deuterium in water and aqueous adjuvants. Full article
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<p>Schematic diagrams of human stable nuclide monitoring: (<b>a</b>) <sup>15</sup>N, <sup>2</sup>H и <sup>18</sup>O tracers; (<b>b</b>) D<sub>2</sub>O tracer.</p>
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<p>Principal schematic of the equipment for two-dimensional inverse diffuse scattering technique: 1—compact emitter, 2—laser processing module, 3—test sample, 4—collecting lens, 5—charge-coupled device (CCD), 6—USB cable, 7—personal computer.</p>
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<p>The diffuse laser scattering scheme (<b>a</b>) an optical field incident is scattered by an optical diffuser and imaged by a camera; (<b>b</b>) an area of the captured speckle pattern is created by the laser diode.</p>
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<p>The visualization of the technique for chemometric analysis of dynamic speckle images, presented as the dependence of descriptors d<sub>1</sub>, d<sub>2</sub>, d<sub>3</sub> on the time of accumulation of the DSpc data.</p>
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<p>The dependence of <span class="html-italic">Sp. Ambiguum</span> lifetime (survival rate) on deuterium concentration in water (<b>a</b>) under the following conditions: (<b>b</b>) at 36 °C (1), 32 °C (2) and 28 °C (3). (<b>c</b>) The “dose—response” relations in observed values of activation energy (values of observed activation energy) <sup>obs</sup>Ea.</p>
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<p>Properties of water with variations in D/H ratio: (<b>a</b>) signal-to-noise ratio (SNR) calculated from measurements for water samples: water bidistilled (SMOW-V) (1); deuterium oxide, 99.8 atom% D (2); water, deuterium-depleted, ≤1 ppm (3) by the LALLS data (<span class="html-italic">n</span> = 15; <span class="html-italic">p</span> = 0.95). SNR = <math display="inline"><semantics> <mrow> <mfrac> <mrow> <mover> <mrow> <mi mathvariant="normal">V</mi> </mrow> <mrow> <mo>¯</mo> </mrow> </mover> </mrow> <mrow> <mi mathvariant="normal">S</mi> <mi mathvariant="normal">D</mi> </mrow> </mfrac> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mover accent="false"> <mrow> <mi>V</mi> </mrow> <mo>¯</mo> </mover> </mrow> </semantics></math> is the average volume fraction (%) of water clusters, SD is standard deviation. The solid horizontal lines denote recommended uncertainty levels (values should be below the lines), and (<b>b</b>) the refractive index (RI) dependence on the deuterium content in water.</p>
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<p>Particle size distributions (PSD) of density heterogeneities (water clusters) in D/H different samples in units: (<b>a</b>) laser light scattering intensity; (<b>b</b>) volume concentration; (<b>c</b>) count rate and PDI.</p>
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<p>The relative frequency of occurrence as a function of optical rotation angle: (<b>a</b>) water, deuterium-depleted, ≤2 ppm; (<b>b</b>) water, bidistilled (SMOW-V); (<b>c</b>) deuterium oxide, 99.8 atom % D(2) (<span class="html-italic">n</span> = 1000; <span class="html-italic">p</span> = 0.95).</p>
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<p>The relative frequency of the occurrence of topological descriptor d<sub>2</sub> of the 2D-DLS method when assessing the intra-laboratory reproducibility of the results of chemometric processing of DSpc structures of Bd samples. RSD for each day: RSD = 3.6% (dark blue curve); RSD = 3.8% (light blue curve); RSD = 2.0% (black curve); RSD = 1.8% (red curve); and intra-laboratory reproducibility RSD = 3.4%.</p>
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<p>The two-dimensional diagram of the diffuse laser scattering method for water samples with different D/H ratios: water bidistilled (Bd, SMOW-V) and deuterium-depleted water (DDW, ≤2 ppm).</p>
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<p>Determining of the intra-laboratory reproducibility of water samples with different D/H ratio results using the 2D-DLS method for a range of laboratory samples with D/H variations from 1 ppm to 180 ppm: (<b>a</b>) the 2D-diagram; (<b>b</b>) the linear dependence in the “descriptor R-D/H, ppm” coordinates.</p>
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<p>Kinetic scheme of ligand-receptor <span class="html-italic">Sp. Ambiguum</span> interaction: C is cell, L is ligand, <span class="html-italic">n</span>-stoichiometric coefficient, C·L<sub>n</sub>—intermediate state (cell after interaction with the ligand), K<sub>eq</sub> is the equilibrium constant fast stage, f<sub>m</sub> is the rate constant of the cell transition to the dead state, DC is a dead cell. The inserts show photographs of ciliates at the stages of incubation in the medium and recorded of death.</p>
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26 pages, 4174 KiB  
Article
Multimodal Explainability Using Class Activation Maps and Canonical Correlation for MI-EEG Deep Learning Classification
by Marcos Loaiza-Arias, Andrés Marino Álvarez-Meza, David Cárdenas-Peña, Álvaro Ángel Orozco-Gutierrez and German Castellanos-Dominguez
Appl. Sci. 2024, 14(23), 11208; https://doi.org/10.3390/app142311208 - 1 Dec 2024
Viewed by 664
Abstract
Brain–computer interfaces (BCIs) are essential in advancing medical diagnosis and treatment by providing non-invasive tools to assess neurological states. Among these, motor imagery (MI), in which patients mentally simulate motor tasks without physical movement, has proven to be an effective paradigm for diagnosing [...] Read more.
Brain–computer interfaces (BCIs) are essential in advancing medical diagnosis and treatment by providing non-invasive tools to assess neurological states. Among these, motor imagery (MI), in which patients mentally simulate motor tasks without physical movement, has proven to be an effective paradigm for diagnosing and monitoring neurological conditions. Electroencephalography (EEG) is widely used for MI data collection due to its high temporal resolution, cost-effectiveness, and portability. However, EEG signals can be noisy from a number of sources, including physiological artifacts and electromagnetic interference. They can also vary from person to person, which makes it harder to extract features and understand the signals. Additionally, this variability, influenced by genetic and cognitive factors, presents challenges for developing subject-independent solutions. To address these limitations, this paper presents a Multimodal and Explainable Deep Learning (MEDL) approach for MI-EEG classification and physiological interpretability. Our approach involves the following: (i) evaluating different deep learning (DL) models for subject-dependent MI-EEG discrimination; (ii) employing class activation mapping (CAM) to visualize relevant MI-EEG features; and (iii) utilizing a questionnaire–MI performance canonical correlation analysis (QMIP-CCA) to provide multidomain interpretability. On the GIGAScience MI dataset, experiments show that shallow neural networks are good at classifying MI-EEG data, while the CAM-based method finds spatio-frequency patterns. Moreover, the QMIP-CCA framework successfully correlates physiological data with MI-EEG performance, offering an enhanced, interpretable solution for BCIs. Full article
(This article belongs to the Special Issue Electroencephalography (EEG) in Assessment of Engagement and Workload)
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<p>GIGAScience database experiment for MI-EEG classification (left vs. right hand). (<b>Left</b>) Trial timing: A marker appears onscreen; after two seconds, an instruction is shown to the patient, asking them to imagine moving either their left or right hand. The instruction stays onscreen for three seconds before disappearing. (<b>Right</b>) Spatial EEG montage: electrodes are placed starting at the left frontal nodes and continuing through a serpent pattern until they reach the back, at which point they go back to the front and down the center until they reach the CPZ node (10-10 system).</p>
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<p>EEG preprocessing scheme for MI-EEG classification.</p>
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<p>Shannon’s entropy for the GIGAScience database questionnaire answers. Questions were sorted by their entropy value in decreasing order. The dotted line shows the selected threshold (25th percentile) for selecting questions.</p>
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<p>MI-EEG classification models based on deep learning. Softmax activation is always used after the final dense layer for label prediction. Nodes symbolize the different layers with arrows showcasing their connections. Colors are used to differentiate between layer types while outline is used to differentiate specific layers within the same family.</p>
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<p>Experiment’s workflow using MEDL. Each model generates CAMs that are then used to enhance the original EEG input. Model and CAM-based performance measures, along with the questionnaire, are used to perform multimodal analysis via QMIP-CCA.</p>
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<p>MI-EEG GiGaScience classification results. Blue: accuracy; orange: AUC; green: Kappa.</p>
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<p>Inter-subject accuracy results. Subjects are sorted based on EEGNet performance.</p>
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<p>Models rankings vs. <span class="html-italic">t</span>-test <span class="html-italic">p</span>-values. Subjects are sorted based on EEGNet’s accuracy.</p>
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<p>Group-performing MI-EEG classification results. (<b>a</b>) Subjects with EEGNet accuracy above 80%. (<b>b</b>) Subjects with EEGNet accuracy between 60% and 80%. (<b>c</b>) Subjects with EEGNet accuracy below 60%.</p>
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<p>Class score percentage gain per MI class for EEGNet.</p>
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<p>Class score percentage gain per MI class for ShallowConvNet.</p>
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<p>Class score percentage gain per MI class for TCFusion.</p>
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<p>Topomaps of EEGNet. The top row shows the maps for the left-hand class, while the bottom row shows the same for the right-hand class. The topomaps are min–max-normalized horizontally.</p>
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<p>Topomaps of KREEGNet. The top row shows the maps for the left-hand class, while the bottom row shows the same for the right-hand class. The topomaps are min–max-normalized horizontally.</p>
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<p>Topomaps of ShallowConvNet. The top row shows the maps for the left-hand class, while the bottom row shows the same for the right-hand class. The topomaps are min–max-normalized horizontally.</p>
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<p>Topomaps of TCFusion. The top row shows the maps for the left-hand class, while the bottom row shows the same for the right-hand class. The topomaps are min–max-normalized horizontally.</p>
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<p>Violin plot of change in accuracy after CAM enhancements for different subject groups across DL models.</p>
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<p>Models rankings vs. <span class="html-italic">t</span>-test <span class="html-italic">p</span>-values after CAM enhancements.</p>
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<p>The QMIP-CCA relevance analysis results are derived from the multimodal GiGaScience dataset. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>) are studied. Linear CCA and our kernel-based CA enhancement are presented. Background colors for the questionnaire divide the questions into Pre-MI (red), Runs 1 through 5 (blue, purple, yellow, brown, and pink), and Post-MI (white). For the MI-EEG classification measures, colors show the corresponding DL model.</p>
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<p>The QMIP-CCA relevance analysis for the good performance group. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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<p>The QMIP-CCA relevance analysis for the mid-performance group. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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<p>The QMIP-CCA relevance analysis for the poor-performance group. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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<p>The QMIP-CCA relevance analysis for EEGNet. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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<p>The QMIP-CCA relevance analysis for ShallowConvNet. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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<p>The QMIP-CCA relevance analysis for TCFusion. Questionnaire (<b>left</b>) and MI-EEG classification performance measures (<b>right</b>).</p>
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24 pages, 6911 KiB  
Article
The Response of Runoff to Land Use Change in the Northeastern Black Soil Region, China
by Yonggang Hao, Peng Qi and Chong Du
Water 2024, 16(23), 3456; https://doi.org/10.3390/w16233456 - 1 Dec 2024
Viewed by 486
Abstract
With the intensification of climate change and human activities, the impacts of land use shifts on hydrological processes are becoming more pronounced, especially in regions with complex geographic, geological, and climatic conditions such as the Northeast Black Soil Region, China. This study quantitatively [...] Read more.
With the intensification of climate change and human activities, the impacts of land use shifts on hydrological processes are becoming more pronounced, especially in regions with complex geographic, geological, and climatic conditions such as the Northeast Black Soil Region, China. This study quantitatively examines the variations in various land use types from 1980 to 2020 by means of a land use transfer matrix, and it incorporates the multi-year average runoff value to mitigate the interference of short-term climate fluctuations on the runoff trend, thereby enhancing the representativeness and stability of the simulation outcomes. The SWAT (Soil and Water Assessment Tool) model is employed to simulate land use alterations in different periods. The findings indicate that the area of farmland increased by 5.34% and the area of grassland decreased by 5.36% over 40 years. The areas of forest land and wetland have fluctuated significantly due to policy interventions and population growth. This study discovers that LUCC has resulted in a marginal increase in annual water yield. For instance, the water yield of paddy fields in 2020 amounts to 92.26 mm/year, which is 0.52–9.42% higher than the historical scenario and exhibits a notable upward trend in summer. Spatial analysis discloses regional disparities, with substantial changes in the hydrological behavior of northern watersheds (such as the Huma River) and southeastern regions (such as the Toudao River). The augmentation of wetland and forest coverage has effectively mitigated peak runoff, especially during extreme rainfall events. Wetlands have manifested strong water regulation capabilities and alleviated the impact of floods. This study quantitatively discloses the complex response pattern of LUCC to runoff by introducing a multi-scale analysis approach, which furnishes a scientific basis for flood risk assessment, land use optimization, and water resource management, and demonstrates the potential for extensive application in other countries and regions with similar climatic and topographic conditions. Full article
(This article belongs to the Section Soil and Water)
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<p>Location and elevations of the River Basin in Northeast Black Soil Region of China, gauging stations, weather stations, rivers, and the study area.</p>
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<p>Land use in 1980, 1990, 2000, 2010, and 2020 in River Basin in Northeast Black Soil Region, China.</p>
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<p>Land use transfer matrix from 1980 to 2020. The lines illustrate the conversion between different land use types across time periods, highlighting the dynamics of land use change.</p>
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<p>Annual runoff at the downstream outlet of the Songhua River under different scenarios (S0, S1, S2, S3, and S4).</p>
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<p>Monthly distribution of multi-year average water yield in the River Basin of Northeast Black Soil Region, China, under different scenarios (S0, S1, S2, S3, and S4).</p>
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<p>Runoff coefficient distribution in River Basin in Northeast Black Soil Region, China.</p>
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<p>The six hydrological variables expressed as a proportion of the mean annual precipitation are: groundwater contribution to streamflow (GWQ), lateral flow contribution to streamflow (LATQ), percolation beyond the root zone (PERC), surface runoff generated within the watershed (SURQ), and soil water (SW). The six hydrological variables expressed as a proportion of the mean annual precipitation are: groundwater contribution to streamflow (GWQ), lateral flow contribution to streamflow (LATQ), percolation beyond the root zone (PERC), surface runoff generated within the watershed (SURQ), soil water content (SW), and water yield (WYLD).</p>
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<p>Spatial distribution of seasonal water yield under different scenarios (S0, S1, S2, S3, and S4). Each subfigure (<b>a</b>–<b>d</b>) represents the water yield for spring, summer, autumn, and winter.</p>
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<p>Spatial distribution of absolute changes in seasonal water yield under different scenarios (S0, S1, S2, S3, and S4).</p>
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16 pages, 3339 KiB  
Article
Characterization and Analysis of the Functional Differences of the Two Eclosion Hormones in Regulating Molting in the White Shrimp Litopenaeus vannamei
by Yunjiao Li, Zecheng Li, Hongmei Ran, Zihan Fan, Fan Yang, Hu Chen and Bo Zhou
Int. J. Mol. Sci. 2024, 25(23), 12813; https://doi.org/10.3390/ijms252312813 - 28 Nov 2024
Viewed by 400
Abstract
Litopenaeus vannamei, with an annual production of 5–6 million tons and a value of USD 50–60 billion, is a cornerstone of global aquaculture. However, molting-related losses of 5–20% significantly impact this industry, and the physiological mechanisms of molting remain unclear. This study [...] Read more.
Litopenaeus vannamei, with an annual production of 5–6 million tons and a value of USD 50–60 billion, is a cornerstone of global aquaculture. However, molting-related losses of 5–20% significantly impact this industry, and the physiological mechanisms of molting remain unclear. This study aims to elucidate the role of eclosion hormone (EH) in molting regulation and enhances the understanding of molting physiology in L. vannamei. This study investigated the role of (EH) in L. vannamei molting regulation. Two EH cDNAs, LvEH I and LvEH II, were identified, and their expression patterns across tissues and seven molting stages (A, B, C, D0, D1, D2, and D3) were analyzed. LvEH I was predominantly expressed in the gill, epidermis, and eyestalk, while LvEH II was mainly expressed in the eyestalk and brain. LvEH I was highly expressed in the eyestalk, epidermis, and gills at the D2 and D3 stages of molting, whereas LvEH II was highly expressed in both the D2 (brain) and D3 (eyestalk) stages. RNA interference (RNAi) targeting LvEH I revealed its critical role in molting, as silencing LvEH I disrupted the expression of molting-regulation genes, ETH, CCAP, CHH, EH II, CDA, and bursicon (Burs), significantly delaying the molting process. These findings highlight both LvEH I and LvEH II as indispensable for normal molting in L. vannamei and provide a foundation for developing effective molting management strategies to reduce industry losses. Full article
(This article belongs to the Section Molecular Endocrinology and Metabolism)
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<p>cDNA sequences, deduced amino acids, and three-dimensional structural characteristics of EH I (<b>A</b>) and EH II (<b>B</b>). The start and stop codons are marked with boxes, the primers are marked with arrows, the signal peptide is marked with bold black underlines, the mature peptide is marked with gray shading, and the structurally conserved cysteine residues are marked with bold. Yellow shading is used to mark the cleavage site. * indicates the termination signal.</p>
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<p>Multiple sequence alignment of EH I (<b>A</b>) and EH II (<b>B</b>).</p>
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<p>Phylogenetic tree of EH I (<b>A</b>) and EH II (<b>B</b>). The target sequences of this study are marked with black triangles.</p>
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<p>Relative expression of EH I (<b>A</b>) and EH II (<b>B</b>) in different tissues of <span class="html-italic">Litopenaeus vannamei</span>. The relative expression levels of EH I and II in 10 tissues were detected via qRT–PCR, and the statistics were calculated via the 2<sup>−ΔΔCT</sup> method and are expressed as the means ± standard errors of the means (n ≥ 3). Lowercase letters indicate significant differences, with different letters showing a significant difference between groups.</p>
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<p>Expression of <span class="html-italic">EH I</span> (<b>A</b>) and <span class="html-italic">EH II</span> (<b>B</b>) in tissues with significantly higher expression during different stages of molting (n = 3). Lowercase letters indicate significant differences, with different letters showing a significant difference between groups.</p>
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<p>Effects of ds<span class="html-italic">EH I</span> injection on <span class="html-italic">EH I</span> expression in gills (<b>A</b>), molting progression (<b>B</b>), and molting microscopic characteristics (<b>C</b>). * represents significant differences, and <span class="html-italic">p</span> &lt; 0.05. Arrows and bidirectional arrows are used to mark the space between the cuticle and epidermis.</p>
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<p>Effects of EH interference on the expression of molting-related genes in the nervous system (<b>A</b>) and gills (<b>B</b>). Due to the high expression of different molting-related genes in different parts of nervous systems, we use the whole nervous system as samples (including brain, eyestalk, circumesophageal ganglion, ventral nerve cord, etc.). * and ** represent significant differences and represent <span class="html-italic">p</span> &lt; 0.05 or <span class="html-italic">p</span> &lt; 0.01.</p>
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13 pages, 932 KiB  
Article
Metabolomic Profiling and Functional Characterization of Biochar from Vine Pruning Residues for Applications in Animal Feed
by Serena Reggi, Sara Frazzini, Maria Claudia Torresani, Marianna Guagliano, Cinzia Cristiani, Salvatore Roberto Pilu, Martina Ghidoli and Luciana Rossi
Animals 2024, 14(23), 3440; https://doi.org/10.3390/ani14233440 - 28 Nov 2024
Viewed by 593
Abstract
Biochar has gained interest as a feed ingredient in livestock nutrition due to its functional properties, circularity, potential to reduce environmental impact, and alignment with sustainable agro-zootechnical practices. The in vivo effects of biochar are closely tied to its physical characteristics, which vary [...] Read more.
Biochar has gained interest as a feed ingredient in livestock nutrition due to its functional properties, circularity, potential to reduce environmental impact, and alignment with sustainable agro-zootechnical practices. The in vivo effects of biochar are closely tied to its physical characteristics, which vary depending on the biomass used as feedstock and the production process. This variability can result in heterogeneity among biochar types used in animal nutrition, leading to inconsistent outcomes. The aim of this study was to characterize the metabolomic and functional properties of an aqueous biochar extract from vine pruning waste, in order to predict its potential in vivo effects as a functional feed ingredient. A metabolomic analysis of the biochar extracts was conducted using quadrupole time-f-light (QQTOF) high-performance liquid chromatography tandem mass spectrometry (HPLC MS/MS). Antimicrobial activity against E. coli F18+ and E. coli F4+ was assessed using standard growth inhibition assays, while quorum sensing in E. coli exposed to biochar extracts was evaluated using real-time PCR. Prebiotic activity was assessed by exposing selected Lactobacillus strains to the biochar extract, monitoring growth patterns to determine species-specific responses. The metabolomic profile revealed several distinct molecular classes, including multiple peaks for phenolic compounds. The extract significantly inhibited the growth of both E. coli pathotypes, reducing growth by 29% and 16% for the F4+ and F18+, respectively (p < 0.001). The relative expression of the genes involved in quorum sensing (MotA, FliA for biofilm formation, and FtsE, HflX for cell division) indicated that the observed inhibitory effects likely resulted from interference with flagellar synthesis, motility, and reduced cell division. The biochar extract also showed species-specific prebiotic potential. In conclusion, biochar derived from vine pruning waste represents a valuable feed ingredient with functional properties that may help to reduce antibiotic use in livestock production. Full article
(This article belongs to the Section Animal System and Management)
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Figure 1
<p>Assessment of growth inhibition by the VB extract against <span class="html-italic">E. coli</span>. (<b>a</b>) Growth inhibition of <span class="html-italic">E. coli</span> F4+. (<b>b</b>) Growth inhibition of <span class="html-italic">E. coli</span> F18+. Data are shown as means and standard deviations. Different superscript letters indicate significant differences at <span class="html-italic">p</span> &lt; 0.05 among different concentrations within the same time point.</p>
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<p>Relative expression of FliA, MotA, FtsE, and Hflx genes. (<b>a</b>) Relative expression for <span class="html-italic">E. coli</span> F18+ at 3 h of coculture with 100 μL/mL of the VB extract; (<b>b</b>) Relative expression for <span class="html-italic">E. coli</span> F4+ at 3 h of coculture with 100 μL/mL of the VB extract. * indicates <span class="html-italic">p</span> ≤ 0.05; ** indicates <span class="html-italic">p</span> ≤ 0.01; **** indicates <span class="html-italic">p</span> ≤ 0.0001.</p>
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<p>(<b>a</b>) <span class="html-italic">L. reuteri</span> growth in the presence of 0, 50, and 100 μL/mL of VB biochar over time; (<b>b</b>) <span class="html-italic">L. plantarum</span> growth in the presence of 0, 50, and 100 μL/mL of VB biochar over time. Different superscript letters indicate significant differences at <span class="html-italic">p</span> &lt; 0.05 among different concentrations within the same time point.</p>
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11 pages, 267 KiB  
Review
Assessing Fat Grafting in Breast Surgery: A Narrative Review of Evaluation Techniques
by Razvan-George Bogdan, Alina Helgiu, Anca-Maria Cimpean, Cristian Ichim, Samuel Bogdan Todor, Mihai Iliescu-Glaja, Ioan Catalin Bodea and Zorin Petrisor Crainiceanu
J. Clin. Med. 2024, 13(23), 7209; https://doi.org/10.3390/jcm13237209 - 27 Nov 2024
Viewed by 509
Abstract
Fat grafting has gained prominence in reconstructive and aesthetic surgery, necessitating accurate assessment methods for evaluating graft volume retention. This paper reviews various techniques for assessing fat and fat grafts, including their benefits and limitations. Three-dimensional (3D) scanning offers highly accurate, non-invasive volumetric [...] Read more.
Fat grafting has gained prominence in reconstructive and aesthetic surgery, necessitating accurate assessment methods for evaluating graft volume retention. This paper reviews various techniques for assessing fat and fat grafts, including their benefits and limitations. Three-dimensional (3D) scanning offers highly accurate, non-invasive volumetric assessments with minimal interference from breathing patterns. Magnetic resonance imaging (MRI) is recognized as the gold standard, providing precise volumetric evaluations and sensitivity to complications like oil cysts and necrosis. Computed tomography (CT) is useful for fat volume assessment but may overestimate retention rates. Ultrasonography presents a reliable, non-invasive method for measuring subcutaneous fat thickness. Other methods, such as digital imaging, histological analysis, and weight estimation, contribute to fat graft quantification. The integration of these methodologies is essential for advancing fat graft assessment, promoting standardized practices, and improving patient outcomes in clinical settings. Full article
18 pages, 6054 KiB  
Article
Revealing Long-Range Order in Brush-like Graft Copolymers Through In Situ Measurements of X-Ray Scattering During Deformation
by Akmal Z. Umarov, Evgeniia A. Nikitina, Alexey A. Piryazev, Ioannis Moutsios, Martin Rosenthal, Andrey O. Kurbatov, Yulia D. Gordievskaya, Elena Yu. Kramarenko, Erfan Dashtimoghadam, Mitchell R. Maw, Sergei S. Sheiko and Dimitri A. Ivanov
Polymers 2024, 16(23), 3309; https://doi.org/10.3390/polym16233309 - 27 Nov 2024
Viewed by 529
Abstract
Brush-like graft copolymers (A-g-B), in which linear A-blocks are randomly grafted onto the backbone of a brush-like B-block, exhibit intense strain-stiffening and high mechanical strength on par with load-bearing biological tissues such as skin and blood vessels. To elucidate molecular mechanisms underlying this [...] Read more.
Brush-like graft copolymers (A-g-B), in which linear A-blocks are randomly grafted onto the backbone of a brush-like B-block, exhibit intense strain-stiffening and high mechanical strength on par with load-bearing biological tissues such as skin and blood vessels. To elucidate molecular mechanisms underlying this tissue-mimetic behavior, in situ synchrotron X-ray scattering was measured during uniaxial stretching of bottlebrush- and comb-like graft copolymers with varying densities of poly(dimethyl siloxane) and poly(isobutylene) side chains. In an undeformed state, these copolymers revealed a single interference peak corresponding to the average spacing between the domains of linear A-blocks arranged in a disordered, liquid-like configuration. Under uniaxial stretching, the emergence of a distinct four-spot pattern in the small-angle region indicated the development of long-range order within the material. According to the affine deformation of a cubic lattice, the four-spot pattern’s interference maxima correspond to 110 reflections upon stretching along the [111] axis of the body-centered unit cell. The experimental findings were corroborated by computer simulations of dissipative particle dynamics that confirmed the formation of a bcc domain structure. Full article
(This article belongs to the Collection Progress in Polymer Applications)
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Graphical abstract

Graphical abstract
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<p>(<b>a</b>) Representative 2D scattering patterns obtained during uniaxial stretching of sample PDMS-PMMA_3. The extension direction is parallel to the z-axis. (<b>b</b>) Corresponding 1D diffraction profiles extracted from the patterns in (<b>a</b>), along the directions parallel and perpendicular to the stretching axis. The characteristic distances, including interdomain spacing (d<sub>3</sub>), form factor of the <b>A</b>-block domains (d<sub>2</sub>), and bottlebrush peak (d<sub>1</sub>), are indicated. The λ values are specified for each profile. (<b>c</b>) Stress–elongation curve for the same sample.</p>
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<p>(<b>a</b>) Representative 2D scattering patterns obtained during uniaxial stretching of sample PIB_PS_2. The extension direction is oriented at a 45° angle relative to the horizontal axis. (<b>b</b>) Corresponding 1D diffraction profiles extracted from the patterns in (<b>a</b>), along the directions parallel and perpendicular to the stretching axis. The λ values are specified for each profile. (<b>c</b>) Stress–elongation curve for the same sample.</p>
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<p>(<b>a</b>–<b>c</b>) Variation of the normalized values of d<sub>1</sub>, d<sub>2,</sub> and d<sub>3</sub>, respectively, as a function of λ during the stretching of sample PDMS-PMMA_3. The values of d<sub>3,‖</sub> are not measurable above λ of 1.75. The solid lines in (<b>a</b>) represent fits based on Equation (14).</p>
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<p>(<b>a</b>,<b>b</b>) Variation of the normalized values of d<sub>3</sub> and d<sub>2</sub>, respectively, as a function of λ during the stretching of sample PIB_PS_2. The solid lines in (<b>a</b>) represent fits based on Equation (14).</p>
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<p>Detailed view of the small-angle region: the distinctive four-spot pattern characteristic of the deformed brush copolymers. The azimuthal angle (φ) is defined as the angle between the direction of the SAXS maxima and the axis of stretching.</p>
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<p>Variation of the azimuthal angle (φ) as a function of the drawing ratio (λ) for the analyzed comb- and brush-like copolymers. The dashed line represents the analytical prediction based on Equation (15), illustrating the angle between the [111] direction and the normal to the (110) planes of a bcc lattice under the assumption of affine deformation.</p>
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<p>Schematic representation of the affine stretching of a <span class="html-italic">bcc</span> lattice along the [111] direction, illustrating the rotation of (110) planes induced by the applied deformation.</p>
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<p>(<b>a</b>) Snapshot of the system at <span class="html-italic">λ</span> = 1, suggesting a structural arrangement closely resembling a <span class="html-italic">bcc</span> lattice. The backbone and side chain beads are shown in 90% transparent colors. (<b>b</b>) The structure factor for various components within the bottlebrush melt, as well as the scattering intensity from the hydrophobic beads along a single direction, derived from simulation experiments.</p>
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<p>(<b>a</b>) The true stress dependence on <span class="html-italic">λ</span> = <span class="html-italic">L</span>/<span class="html-italic">L</span>_0. The black line corresponds to simulation results, and the red line corresponds to fits with Equation (9). (<b>b</b>) Scattering intensity profiles calculated for the hydrophobic beads along the stretching direction and perpendicular to it, with corresponding 2D SAXS patterns shown as insets. (<b>c</b>) Snapshots of the system at different drawing ratios <span class="html-italic">λ</span>.</p>
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<p>(<b>a</b>) Chemical structures of the synthesized <b>A</b>-g-<b>B</b> graft copolymers where <b>A</b> stands for poly(methyl methacrylate) or polystyrene and <b>B</b> denotes poly(dimethylsiloxane) or poly(isobutylene). (<b>b</b>) Self-assembly of the <b>A</b>-g-<b>B</b> graft copolymers in a physical network composed of nanometer-sized domains of <b>A</b> connected by the bottlebrush blocks. The variable structural parameters include the length of the bottlebrush backbone n<sub>BB</sub>, length of side chains n<sub>sc</sub>, length of the graft block n<sub>A</sub>, and distance between the grafted blocks n<sub>x</sub>. Upon self-assembly, the system forms domains of block <b>A</b> with a diameter d<sub>2</sub> separated by a distance d<sub>3</sub> and a diameter of the <b>B</b>-block equal d<sub>1</sub>.</p>
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28 pages, 9440 KiB  
Article
Analysis of Resistance in Magnetic Flux Leakage (MFL) Detectors for Natural Gas Pipelines
by Zenggang Zhang, Xiangjun Chen, Chuanmin Tai, Guansan Tian and Guozhao Han
Sensors 2024, 24(23), 7563; https://doi.org/10.3390/s24237563 - 27 Nov 2024
Viewed by 414
Abstract
This study systematically explores the sources and influencing factors of resistance encountered by magnetic flux leakage (MFL) detectors in natural gas pipelines through a theoretical analysis, experimental investigation, and numerical simulation. The research methodology involves the development of a fluid–structure interaction model using [...] Read more.
This study systematically explores the sources and influencing factors of resistance encountered by magnetic flux leakage (MFL) detectors in natural gas pipelines through a theoretical analysis, experimental investigation, and numerical simulation. The research methodology involves the development of a fluid–structure interaction model using ABAQUS 2023 finite element software, complemented by the design and implementation of a pull-testing platform for MFL detectors. This platform simulates detector operation under various interference conditions and quantifies the resulting frictional resistance. The findings reveal that the primary source of frictional resistance is the contact interaction between the MFL detector and the pipeline wall. Key factors influencing the magnitude of this resistance include the detector’s mass, the structural design and materials of the sealing cups and support plates, as well as the surface roughness of the pipeline. Both experimental results and numerical simulations demonstrate a pronounced increase in frictional resistance with heightened interference levels. The theoretical model exhibits strong agreement with experimental data, though deviations are observed under conditions of severe interference. This study provides a detailed understanding of frictional resistance patterns under diverse structural and operational scenarios, offering both theoretical guidance and practical recommendations for the design of low-resistance MFL detectors. Full article
(This article belongs to the Section Electronic Sensors)
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Figure 1
<p>Structure of the MFL detector.</p>
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<p>Schematic diagram of the working principle of a magnetic flux leakage (MFL) detector: (<b>a</b>) no defects and no magnetic flux leakage; (<b>b</b>) with defects and with magnetic flux leakage.</p>
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<p>Schematic diagram of the gravitational dynamics of the MFL detector: (<b>a</b>) Section View. (<b>b</b>) Plan View.</p>
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<p>Force analysis at the cup end.</p>
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<p>Diagram of cup end as a cantilever beam.</p>
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<p>Cup Structure Diagram.</p>
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<p>Graph of cup frictional force vs. interference fit.</p>
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<p>Structure of the straight Ppate.</p>
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<p>Shore Scleroscope.</p>
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<p>Geometric model of the driving section.</p>
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<p>Geometric model of the pipeline.</p>
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<p>Contact surface and target surface diagram.</p>
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<p>Mesh division diagram of the driving section and pipeline.</p>
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<p>Comparison of contact stress at the front and rear straight plates of the driving section.</p>
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<p>Comparison of contact stress at the front and rear cups of the driving section.</p>
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<p>The contact stress of the flat end as a function of interference fit: (<b>a</b>) flat end with 6 mm wall thickness; (<b>b</b>) flat end with 7 mm wall thickness; (<b>c</b>) flat end with 8 mm wall thickness; (<b>d</b>) flat end with 9 mm wall thickness; (<b>e</b>) flat end with 10 mm wall thickness.</p>
Full article ">Figure 16 Cont.
<p>The contact stress of the flat end as a function of interference fit: (<b>a</b>) flat end with 6 mm wall thickness; (<b>b</b>) flat end with 7 mm wall thickness; (<b>c</b>) flat end with 8 mm wall thickness; (<b>d</b>) flat end with 9 mm wall thickness; (<b>e</b>) flat end with 10 mm wall thickness.</p>
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<p>The contact stress of the flat end as a function of interference fit: (<b>a</b>) flat end with 6 mm wall thickness; (<b>b</b>) flat end with 7 mm wall thickness; (<b>c</b>) flat end with 8 mm wall thickness; (<b>d</b>) flat end with 9 mm wall thickness; (<b>e</b>) flat end with 10 mm wall thickness.</p>
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<p>Contact stress at the end of the leather bowl versus interference fit: (<b>a</b>) cup with 6 mm wall thickness; (<b>b</b>) cup with 7 mm wall thickness;(<b>c</b>) cup with 8 mm wall Thickness; (<b>d</b>) cup with 9 mm wall thickness; (<b>e</b>) cup with 10 mm wall thickness.</p>
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<p>Contact stress at the end of the leather bowl versus interference fit: (<b>a</b>) cup with 6 mm wall thickness; (<b>b</b>) cup with 7 mm wall thickness;(<b>c</b>) cup with 8 mm wall Thickness; (<b>d</b>) cup with 9 mm wall thickness; (<b>e</b>) cup with 10 mm wall thickness.</p>
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<p>Contact stress at the end of the leather bowl versus interference fit: (<b>a</b>) cup with 6 mm wall thickness; (<b>b</b>) cup with 7 mm wall thickness;(<b>c</b>) cup with 8 mm wall Thickness; (<b>d</b>) cup with 9 mm wall thickness; (<b>e</b>) cup with 10 mm wall thickness.</p>
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<p>Variation in frictional resistance in the driving section with the wall thickness of a 273 mm pipeline.</p>
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<p>(<b>a</b>) Experimental device diagram; (<b>b</b>) site plan diagram.</p>
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<p>(<b>a</b>) Experimental pipeline; (<b>b</b>) pipeline support diagram.</p>
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<p>Device diagram: (<b>a</b>) traction machine and steel wire rope; (<b>b</b>) hand-operated winch and tail rope; (<b>c</b>) tensile force gauge.</p>
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<p>Proportion of frictional force on different parts of the in-line inspection tool: (<b>a</b>) Φ273 mm × 10 mm pipe-section-starting friction force components; (<b>b</b>) Φ273 mm×7 mm pipe-section-starting friction force components; (<b>c</b>) Φ 273 mm × 6 mm pipe-section-running friction force components; (<b>d</b>) Φ273 mm × 10 mm pipe-section-starting friction force components; (<b>e</b>) Φ273 mm × 7 mm pipe-section-running friction force components; (<b>f</b>) Φ273 mm × 6 mm pipe-section-running friction force components.</p>
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<p>Proportion of frictional force on different parts of the in-line inspection tool: (<b>a</b>) Φ273 mm × 10 mm pipe-section-starting friction force components; (<b>b</b>) Φ273 mm×7 mm pipe-section-starting friction force components; (<b>c</b>) Φ 273 mm × 6 mm pipe-section-running friction force components; (<b>d</b>) Φ273 mm × 10 mm pipe-section-starting friction force components; (<b>e</b>) Φ273 mm × 7 mm pipe-section-running friction force components; (<b>f</b>) Φ273 mm × 6 mm pipe-section-running friction force components.</p>
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<p>Comparison of frictional force magnitude from the mathematical model, experimental data, and simulation.</p>
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