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15 pages, 449 KiB  
Article
Efficacy and Safety Assessment of Antifungal Prophylaxis with Posaconazole Using Therapeutic Drug Monitoring in Pediatric Patients with Oncohematological Disorders—A Single-Centre Study
by Karolina Liszka, Paweł Marschollek, Dawid Przystupski, Jowita Frączkiewicz, Monika Mielcarek-Siedziuk, Igor Olejnik, Zuzanna Gamrot, Natalia Haze, Agnieszka Kwella, Paulina Zalewska, Matylda Resztak, Marek Ussowicz and Krzysztof Kałwak
J. Fungi 2025, 11(1), 38; https://doi.org/10.3390/jof11010038 - 6 Jan 2025
Viewed by 324
Abstract
Introduction: Posaconazole is recommended for prophylaxis in pediatric immunocompromised patients. Due to its variability in bioavailability and drug-to-drug interactions, EBMT recommends regimens based on therapeutic drug monitoring (TDM). Materials and methods: In total, 171 oncohematological pediatric patients on posaconazole prophylaxis were included. Full [...] Read more.
Introduction: Posaconazole is recommended for prophylaxis in pediatric immunocompromised patients. Due to its variability in bioavailability and drug-to-drug interactions, EBMT recommends regimens based on therapeutic drug monitoring (TDM). Materials and methods: In total, 171 oncohematological pediatric patients on posaconazole prophylaxis were included. Full pharmacokinetic posaconazole profiles were assessed in 51 children. The efficacy and safety of posaconazole was evaluated by measuring the drug concentration, with dose modification attempted in patients with suboptimal results. The influence of modifying factors on the posaconazole plasma concentration (PPC) was investigated. Results: An insufficient PPC was the main issue, but no significant increase in prophylaxis failure was reported. The modification of the dosage resulted in the optimization of PPC in 50% of patients. No significant correlation between age, gender, diagnosis or the posaconazole dosage and the PPC was found. HCT, total parenteral nutrition and diarrhea were associated with a lower PPC. Hypoalbuminemia was related to both higher and lower PPC. The concomitant administration of specified drugs significantly impacted the PPC. Conclusions: TDM allows the identification of patients receiving non-optimal treatment and offers an opportunity to improve the efficacy and safety of the therapy. However, further research involving larger patient groups and longer observation periods are needed to determine the optimal dosing and target PPC in pediatric patients. Full article
(This article belongs to the Special Issue Advances in Antifungal Drugs, 2nd Edition)
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<p>Distribution of posaconazole concentrations across different age groups.</p>
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11 pages, 416 KiB  
Article
Epidemiology, Clinical, Radiological and Biological Characteristics, and Outcomes of Mucormycosis: A Retrospective Study at a French University Hospital
by Tom Cartau, Sylvain Chantepie, Angélique Thuillier-Lecouf, Bénédicte Langlois and Julie Bonhomme
J. Fungi 2024, 10(12), 884; https://doi.org/10.3390/jof10120884 - 19 Dec 2024
Viewed by 529
Abstract
Purpose: Mucormycosis is a rare but emerging and life-threatening infection caused by environmental mold, with a mortality rate of 30–70% despite progress in management. A better understanding could improve its management. Method: We conducted a single-center retrospective study of all cases of mucormycosis [...] Read more.
Purpose: Mucormycosis is a rare but emerging and life-threatening infection caused by environmental mold, with a mortality rate of 30–70% despite progress in management. A better understanding could improve its management. Method: We conducted a single-center retrospective study of all cases of mucormycosis observed over a decade at the University Hospital of Caen. Results: Between 2014 and 2024, 18 cases of mucormycosis were identified, predominantly in males (n = 11, 65%). Most patients had hematological malignancies (n = 16, 89%). Seven cases were proven, and eleven were classified as probable. The main locations of infection were pulmonary (n = 12, 67%). Since 2021, we have observed an increase in the number of cases, rising from three between 2014 and 2021 to fifteen between 2021 and 2024. Among the 12 patients with pulmonary mucormycosis, all presented with fever except 1, and 67% required oxygen therapy. Chest computed tomography scans revealed an inverse halo sign in one-third of the patients. The first-line treatment consisted of amphotericin B in seventeen patients, posaconazole in one patient, and isavuconazole in one patient. Surgery was performed on seven patients. In cases of cutaneous mucormycosis, all patients underwent surgery, and none died within three months after the diagnosis. Overall, the three-month mortality rate was 39%. Surgical management was associated with a reduction in mortality (0% vs. 64%, p = 0.013). Conclusions: This study highlights the role of PCR for early diagnosis and the key role of surgery in improving clinical outcomes while underscoring the need for better-adapted therapeutic protocols for these rare infections. Full article
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<p>Evolution of the number of probable and proven cases of mucormycosis between 2014 and 2024 diagnosed at the University Hospital of Caen.</p>
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27 pages, 6374 KiB  
Article
The Molecular Basis of the Intrinsic and Acquired Resistance to Azole Antifungals in Aspergillus fumigatus
by Parham Hosseini, Mikhail V. Keniya, Alia A. Sagatova, Stephanie Toepfer, Christoph Müller, Joel D. A. Tyndall, Anette Klinger, Edmond Fleischer and Brian C. Monk
J. Fungi 2024, 10(12), 820; https://doi.org/10.3390/jof10120820 - 26 Nov 2024
Viewed by 668
Abstract
Aspergillus fumigatus is intrinsically resistant to the widely used antifungal fluconazole, and therapeutic failure can result from acquired resistance to voriconazole, the primary treatment for invasive aspergillosis. The molecular basis of substrate specificity and innate and acquired resistance of A. fumigatus to azole [...] Read more.
Aspergillus fumigatus is intrinsically resistant to the widely used antifungal fluconazole, and therapeutic failure can result from acquired resistance to voriconazole, the primary treatment for invasive aspergillosis. The molecular basis of substrate specificity and innate and acquired resistance of A. fumigatus to azole drugs were addressed using crystal structures, molecular models, and expression in Saccharomyces cerevisiae of the sterol 14α-demethylase isoforms AfCYP51A and AfCYP51B targeted by azole drugs, together with their cognate reductase AfCPRA2 and AfERG6 (sterol 24-C-methyltransferase). As predicted by molecular modelling, functional expression of CYP51A and B required eburicol and not lanosterol. A crowded conformationally sensitive region involving the BC-loop, helix I, and the heme makes AfCYP51A T289 primarily responsible for resistance to fluconazole, VT-1161, and the agrochemical difenoconazole. The Y121F T289A combination was required for higher level acquired resistance to fluconazole, VT-1161, difenoconazole, and voriconazole, and confirms posaconazole, isavuconazole and possibly ravuconazole as preferred treatments for target-based azole-resistant aspergillosis due to such a combination of mutations. Full article
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<p>Ergosterol biosynthesis from lanosterol in the yeast <span class="html-italic">S. cerevisiae</span> (<b>left</b>) and the mould <span class="html-italic">A. fumigatus</span> (<b>right</b>).</p>
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<p>Alignment of BC-loop and helix I regions of CYP51 proteins. AfCYP51A and AfCYP51B were aligned with the AfCYP51 mutants (on grey background) and with CYP51s from <span class="html-italic">Cryptococcus neoformans</span> (CnCYP51), <span class="html-italic">Candida albicans</span> (CaCYP51), <span class="html-italic">Candida parapsilosis</span> (CpCYP51)<span class="html-italic">, Saccharomyces cerevisiae,</span> (ScCYP51), <span class="html-italic">Rhizopus arrhizus</span> (RaCYP51 F1 and F5 isoforms), <span class="html-italic">Pisum sativum</span> (garden pea, PsCYP51), <span class="html-italic">Fragaria vesca</span> (wild strawberry FvCYP51), <span class="html-italic">Nicotiana tabacum</span> (tobacco NtCYP51), Petunia hybrid ssp (PsspCYP51), <span class="html-italic">Sorghum bicolor</span> (Sorghum SbCYP51), <span class="html-italic">Triticum aestivum</span> (wheat TvCYP51), <span class="html-italic">Oryza sativa</span> (rice OsCYP51), and <span class="html-italic">Homo sapiens</span> (HsCYP51) using CLC Sequence Viewer 8.0 software (Aarhus, Denmark). The residues equivalent to Y121 and T289 (highlighted in turquoise) in AfCYP51A are intrinsically substituted with phenylalanine and alanine in plant Obtusifoliol 14α-demethylases, and the <span class="html-italic">R. arrhizus</span> CYP51 F5 isoforms (highlighted in yellow), respectively. RaCYP51 F5 and the plant CYP51s also substitute the residue immediately downstream of the alanine with another alanine (highlighted in magenta). The residues equivalent to AfCYP51A I303 (highlighted in dark grey) in helix I are substituted with T in CYP51 from plants, fungi, and humans.</p>
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<p>Superimposition and docking studies with the AfCYP51A (green) homology model. The AfCYP51A homology model (<b>A</b>,<b>C</b>,<b>D</b>) was obtained using the AfCYP51B crystal structure (<b>B</b>) as a template and superimposed with lanosterol in the HsCYP51 crystal structure (<b>D</b>). The heme, helix I, and BC-loop from crystal structures for ScCYP51 (turquoise) in complex with FLC (PDB ID: 4WMZ) and AfCYP51B (purple) in complex with VCZ (PDB: 4UYM) are also shown. (<b>A</b>) AfCYP51A model (green) superimposed on ScCYP51 in complex with FLC (turquoise). The 4-fluorine of the FLC difluorophenyl group is surrounded by V120/I139, F115/F134, T289/G310, and L290/V311 in AfCYP51/ScCYP51. ScCYP51 G310 aligns with the larger polar T289 in AfCYP51A. At the closest approach, FLC is 8.8 Å from L301 in the AfCYP51A helix I. AfCYP51A Y107 and Y121 align with ScCYP51 Y126 and Y140, respectively, which contribute to water-mediated hydrogen bond interactions with FLC in ScCYP51. (<b>B</b>) AfCYP51B crystal structure (purple) superimposed on the crystal structure of ScCYP51 in complex with FLC (turquoise). (<b>C</b>) AfCYP51A model (green) superimposed on the crystal structure of AfCYP51B in complex with VCZ (purple). (<b>D</b>) AfCYP51A homology model with heme, helix I, and helix C in green. Lanosterol from the HsCYP51 crystal structure (PDB ID: 6UEZ) is overlaid, and the top-scoring docked eburicol (Ebu (dock)) conformation is shown. Distances in the figures are provided in Å.</p>
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<p>AfCPRA2-6×His but not AfCPRA1-6×His is detected in <span class="html-italic">S. cerevisiae</span> strains expressing AfCYP51s. (<b>A</b>) Coomassie blue-stained SDS-PAGE gel (8% acrylamide) of 15 μg crude membrane protein samples, and (<b>B</b>) Western blot for the same amount of crude membrane protein samples. Proteins tagged with 6×His were detected by ECL using a peroxidase-conjugated mouse monoclonal Anti-6×His tag antibody. Samples: (M) PageRuler™ Plus prestained protein standards (Bio-Rad Laboratories, Auckland, New Zealand), (1) ADLS, (2) AfCPRA1-6×His not detected in strain A expressing AfCYP51A, (3) AfCPRA2-6×His detected in the strain AR expressing AfCYP51A, (4) AfCPRA1-6×His not detected in the strain B expressing AfCYP51B, (5) AfCPRA2-6×His detected in the strain BR expressing AfCYP51B. The AfCPRA2-6×His protein was detected as two bands (~70 kDa and a minor band at ~80 kDa) in Western blot lanes 3 and 5.</p>
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<p>AfCYP51 isoforms are expressed in <span class="html-italic">S. cerevisiae</span> with their cognate NADPH–cytochrome P450 reductase (AfCPRA2) and sterol 24-C-methyltransferase (AfERG6) enzymes. (<b>A</b>) Coomassie blue-stained SDS-PAGE gel (8% acrylamide) of 30 μg crude membrane protein samples, (<b>B</b>) Western blot ECL detection of CYP51-6×His-tagged proteins by a peroxidase-conjugated mouse anti-6×His monoclonal antibody or (<b>C</b>) ECL detection of AfERG6-FLAG-tagged proteins by a peroxidase-conjugated mouse Anti-FLAG M2-peroxidase antibody. Samples: (M) PageRuler™ Plus prestained protein standards, crude membrane protein samples from strains (1) ADΔΔ, (2) ADLS, (3) ARE, and (4) BRE. (<span class="html-fig-inline" id="jof-10-00820-i001"><img alt="Jof 10 00820 i001" src="/jof/jof-10-00820/article_deploy/html/images/jof-10-00820-i001.png"/></span>) Coomassie-stained AfCPRA2 without 6×His tag expressed from <span class="html-italic">PDR15</span> locus of ARE and BRE samples, (<span class="html-fig-inline" id="jof-10-00820-i002"><img alt="Jof 10 00820 i002" src="/jof/jof-10-00820/article_deploy/html/images/jof-10-00820-i002.png"/></span>) CYP51-6×His, (<span class="html-fig-inline" id="jof-10-00820-i003"><img alt="Jof 10 00820 i003" src="/jof/jof-10-00820/article_deploy/html/images/jof-10-00820-i003.png"/></span>) AfERG6-FLAG.</p>
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<p>Sterol compositions of recombinant <span class="html-italic">S. cerevisiae</span> strains in the absence (ctrl) or presence of VCZ at a concentration that reduced growth rate by ~50%. Y2411 = ADΔΔ; Y2300 = ADLS); Y2746 = ARE, Y2747 = BRE; Y2751 = ARE T289A; Y2753 = ARE I301T.</p>
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<p>Expression of AfCYP51A-6×His mutant constructs in <span class="html-italic">S. cerevisiae</span>. (<b>A</b>) Coomassie blue-stained SDS-PAGE gel (8% acrylamide) of 15 μg crude membrane protein samples, and (<b>B</b>) Western blot ECL detection of 6×His-tagged proteins for equivalent loadings of each crude membrane protein sample. Proteins tagged with 6×His were detected by ECL using a peroxidase-conjugated mouse monoclonal Anti-6×His tag antibody. Samples: (M) PageRuler™ Plus prestained protein standards; crude membrane protein samples from strains (1) ADΔΔ, (2) ARE, (3) Y121F, (4) T289A, (5) Y121F T289A, and (6) I301T.</p>
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<p>Absolute absorbance spectrum and Coomassie blue-stained SDS-PAGE gel (8% acrylamide) of Ni-NTA-purified AfCYP51A-6×His (<b>A</b>) and AfCYP51B-6×His (<b>B</b>). Protein fractions (25 μg) were separated by SDS-PAGE to assess the quality of each sample. (M) PageRuler™ Plus prestained protein standards, (1) crude membrane protein from strain A, (2) AfCYP51A-6×His-purified protein, (3) crude membrane protein from strain B, (4) AfCYP51B-6×His-purified protein.</p>
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<p>Carbon monoxide difference spectrum of Ni affinity-purified AfCYP51A-6×His (continuous line) and AfCYP51B-6×His (dash line).</p>
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<p>Type I binding of (<b>A</b>) eburicol and (<b>B</b>) lanosterol by AfCYP51B-6×His (5 μM) and related saturation curves for (<b>C</b>) eburicol and (<b>D</b>) lanosterol. Absolute absorbance spectra are shown in the thumbnails; (a) reference, (b) complex with substrate.</p>
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<p>Type II binding of azole drugs to AfCYP51A-6×His and AfCYP51B-6×His. Each azole drug was titrated against 1 μM enzyme. The saturation curve for each azole drug was fitted using the Hill equation. The type II difference spectra and saturation curve of AfCYP51A were determined for the binding of FLC (<b>A</b>), VCZ (<b>B</b>), and PCZ (<b>C</b>). The type II difference spectra and saturation curve of AfCYP51B were determined for the binding of FLC (<b>D</b>), VCZ (<b>E</b>), PCZ (<b>F</b>), VT-1161 (<b>G</b>), and DCZ (<b>H</b>). The binding parameters obtained are presented in <a href="#jof-10-00820-t005" class="html-table">Table 5</a>. Absolute absorbance spectra are shown in the thumbnails. (a) Reference, (b) complex with inhibitor.</p>
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21 pages, 5144 KiB  
Article
A Comprehensive Analysis of the Lipidomic Signatures in Rhizopus delemar
by Basharat Ali, Anshu Chauhan, Mohit Kumar, Praveen Kumar, Hans Carolus, Celia Lobo Romero, Rudy Vergauwen, Ashutosh Singh, Atanu Banerjee, Amresh Prakash, Shivaprakash M. Rudramurthy, Patrick Van Dijck, Ashraf S. Ibrahim and Rajendra Prasad
J. Fungi 2024, 10(11), 760; https://doi.org/10.3390/jof10110760 - 1 Nov 2024
Viewed by 1519
Abstract
Certain species of Mucorales have been identified as causative agents of mucormycosis, a rare yet often lethal fungal infection. Notably, these fungi exhibit intrinsic resistance to common azole drugs, which target lipids. Given the pivotal role of lipids in drug resistance and their [...] Read more.
Certain species of Mucorales have been identified as causative agents of mucormycosis, a rare yet often lethal fungal infection. Notably, these fungi exhibit intrinsic resistance to common azole drugs, which target lipids. Given the pivotal role of lipids in drug resistance and their contribution to innate resistance to azoles, this study provides a comprehensive overview of key lipid classes, including sphingolipids (SLs), glycerophospholipids (GPLs), and sterols, in Rhizopus delemar 99-880, a well-characterized reference strain among Mucorales. Using shotgun lipidomics as well as liquid- and gas-chromatography-based mass spectrometric analyses, we identified the lipid intermediates and elucidated the biosynthetic pathways of SLs, PGLs, and sterols. The acidic SLs were not found, probably because the acidic branch of the SL biosynthesis pathway terminates at α-hydroxy phytoceramides, as evident by their high abundance. Intermediates in the neutral SL pathway incorporated higher levels of 16:0 fatty acid compared to other pathogenic fungi. A strikingly high phosphatidylethanolamine (PE)/phosphatdylcholine (PC) ratio was observed among GPLs. Ergosterol remains the major sterol, similar to other fungi, and our analysis confirms the existence of alternate ergosterol biosynthesis pathways. The total lipidomic profile of R. delemar 99-880 offers insights into its lipid metabolism and potential implications for studying pathogenesis and drug resistance mechanisms. Full article
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<p>(<b>a</b>) Susceptibility of <span class="html-italic">R. delemar</span> to SL inhibitors MYR and AbA. Approx. 10<sup>3</sup> spores were spotted on YPD plates with different concentrations of MYR and AbA. Plates were imaged after incubation at 30 °C for 48 h. (<b>b</b>) Pie chart represents proportion of different SL intermediates in <span class="html-italic">R. delemar</span>.</p>
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<p>LCBs detected in <span class="html-italic">R. delemar</span>: DHS, DHS-1-P(d18:0), PHS(t18:0) and SPH, SPH-1-P(d18:1). Bar graphs represent relative proportion of these bases out of total SL content. Structures represent top three major bases, each with different backbone.</p>
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<p>SL classes and molecular species of the neutral branch of SL biosynthesis pathway in <span class="html-italic">R. delemar</span>. (<b>a</b>) Heatmap represents the relative representation of different molecular species of dhCer, Cer, and αOH-Cer. (<b>b</b>) Top five species of each class were quantified and are represented by bar graphs. (<b>c</b>) Structures represent the major molecular species of each class.</p>
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<p>Fungal-specific SL intermediates (<b>a</b>) with d18:2(Δ8-Cer); and (<b>b</b>) with d19:2 backbone (9Me,Δ8-Cer). Bars depict the top molecular species for each backbone type. The structure of one representative species is depicted at the bottom of (<b>a</b>,<b>b</b>) panels.</p>
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<p>Five major species of αOH-GlcCer with d18:2 and d19:2 backbones acylated to fatty acids of varying chain lengths (<span class="html-italic">x</span>-axis). Structures of two major α-OH GlcCer species are drawn. GlcCer(d18:2/16:0(OH)) on the left has a backbone of 18 carbons with double bonds at C4 and C8 position, glucose at C1 position and hydroxyl group at C2 position of the 16C fatty acid chain. Similarly, on the right side, GlcCer(d19:2/16:0(OH)) is the major species with methyl group at C9 position of the sphingoid base.</p>
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<p>(<b>a</b>) PCer and αOH-PCer, two major classes in the acidic branch and their molecular species. (<b>b</b>) Bar graphs represents the relative amounts of top five molecular species for each class. (<b>c</b>) At the bottom, structures of major species in each class are shown.</p>
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<p>PL landscape of <span class="html-italic">R. delemar</span> with relative distribution of PL classes.</p>
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<p>Major PL and Lyso-lipid species of different PL classes detected in <span class="html-italic">R delemar</span>. (<b>a</b>) Heatmap represents relative abundance of molecular species in each class with varying numbers of carbons and double bonds in both acyl chains. (<b>b</b>) Top molecular species from PC, PE, and PI were quantified and are represented by bar graphs. (<b>c</b>) Structures represent major molecular species from each class.</p>
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<p>Major PL classes detected in <span class="html-italic">R delemar</span> and their Lyso-species. (<b>a</b>) Heatmap represents relative abundance of molecular species in each class with varying numbers of carbons and double bonds in both acyl chains. (<b>b</b>) Abundant molecular species from PA, PG, and PS were quantified and are represented by bar graphs. (<b>c</b>) Structures represent major molecular species from each class.</p>
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<p>Major sterol intermediates in <span class="html-italic">R. delemar</span> as detected by GCMS. Only the detected intermediates are shown as bar graphs. Data on <span class="html-italic">Y</span>-axis represent % of each sterol intermediate of total sterol content.</p>
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<p>Putative lipid biosynthesis pathways in <span class="html-italic">R. delemar</span>. Relative abundance of each detected intermediate is depicted by different colors. (<b>a</b>) SL biosynthesis pathway based on the intermediates detected in our analyses. Description of SL class in circles is given by short abbreviations followed by characteristic backbone present. (<b>b</b>) PL biosynthesis pathway and the major classes are given in circles. (<b>c</b>) Sterol biosynthesis pathway as described in other fungi. Sterol intermediates in the circles are the abundant ones detected in our analysis. The intermediates in the central panel form the main pathway while the right and the left are alternative pathways.</p>
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14 pages, 296 KiB  
Article
Candidemia in Pediatric-Clinic: Frequency of Occurrence, Candida Species, Antifungal Susceptibilities, and Effects on Mortality (2020–2024)
by Kamuran Şanlı, Esra Arslantaş, Ayşe Nur Ceylan, Beyza Öncel, Duygu Özkorucu and Ayşe Özkan Karagenç
Diagnostics 2024, 14(20), 2343; https://doi.org/10.3390/diagnostics14202343 - 21 Oct 2024
Viewed by 994
Abstract
Objective: Invasive candidiasis is defined as an important infection that increases the duration of patients’ hospital stay, costs, mortality and morbidity. In this study, we aimed to investigate the frequency of candidiasis in blood cultures of pediatric hematology patients, Candida species, antifungal susceptibilities, [...] Read more.
Objective: Invasive candidiasis is defined as an important infection that increases the duration of patients’ hospital stay, costs, mortality and morbidity. In this study, we aimed to investigate the frequency of candidiasis in blood cultures of pediatric hematology patients, Candida species, antifungal susceptibilities, and their effects on mortality. Materials and Methods: Patients with Candida growth in their blood cultures at follow-up in the pediatric hematology clinic of our hospital between 2020 and 2024 were included in the study. Age, gender, primary diseases and risk levels, subtypes and antifungal susceptibilities of Candida grown in blood cultures, the presence of neutropenia in patients, the antifungals used for prophylaxis and treatment, the duration of infection, other bacteria grown additionally during the fungal infection period, the local infection source and the patients’ discharge status were obtained from medical records. These constituted the study data. Results: Blood cultures were requested for 594 patients from the Pediatric hematology Clinic, and Candida was grown in only 37 (6.7%) of them. A total of 43.2% of them were the Candida parapsilosis complex, 29.7% were Candida albicans and 8.1% were the Candida haemulonii complex. Antifungal susceptibilities were over 90% for anidulafungin, micafungin, caspofungin, posaconazole, itraconazole and amphotericin B, followed by 86.7% for fluconazole and 84.4% for voriconazole. The mean age of the patient group was 6.8 years, 50.5% of whom were female and 40.5% of whom were male. The Candida infections developed on the 12.1th day of the neutropenia process on average. The mean invasive Candida infection period was 7 days. A total of 18.9% had a second bacterial infection and 13.5% had a local infection. A total of 51.4% had a single antifungal, 18.9% had two antifungals and 2.1% had more than two antifungals. A total of 35.1% of the patients with invasive candidiasis died. The primary diagnosis of the disease, Patient risk level, and the female gender were important factors affetting mortality. Conclusions: In a pediatric hematology clinic, the non-albicans group in invasive candidiasis infections was notable, with the C. parapsilosis complex occurring most frequently. There was still a high sensitivity to echinocandin antifungals and a decreased sensitivity to triazoles. It was found that the factor of the clinical diagnosis, being in the high-risk group and being female had significant effects on the survival rate of patients with candidiasis infections. Full article
(This article belongs to the Section Diagnostic Microbiology and Infectious Disease)
11 pages, 2181 KiB  
Article
First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates
by Michael Arabatzis, Philoktitis Abel, Eleni Sotiriou and Aristea Velegraki
J. Fungi 2024, 10(9), 664; https://doi.org/10.3390/jof10090664 - 21 Sep 2024
Viewed by 835
Abstract
Acremonium and the recently separated acremonium-like genera, such as Sarocladium, are emerging causes of opportunistic disease in humans, mainly post-traumatic infections in immunocompetent hosts, but also invasive infections in immunocompromised patients, such as those undergoing transplantation. Acremonium egyptiacum has emerged as the [...] Read more.
Acremonium and the recently separated acremonium-like genera, such as Sarocladium, are emerging causes of opportunistic disease in humans, mainly post-traumatic infections in immunocompetent hosts, but also invasive infections in immunocompromised patients, such as those undergoing transplantation. Acremonium egyptiacum has emerged as the major pathogenic Acremonium species in humans, implicated mainly in nail but also in disseminated and organ specific infections. In this first study of acremonium-like clinical isolates in Greece, 34 isolates were identified and typed by sequencing the internal transcribed spacer, and their antifungal susceptibility was determined by a modified CLSI standard M38 3rd Edition method for filamentous fungi. A. egyptiacum was the primary species (18 isolates) followed by Sarocladium kiliense (8), Acremonium charticola, Gliomastix polychroma, Proxiovicillium blochii, Sarocladium terricola, Sarocladium zeae, and Stanjemonium dichromosporum (all with one isolate). Two isolates, each with a novel ITS sequence, possibly represent undescribed species with an affinity to Emericellopsis. All three A. egyptiacum ITS barcode types described to date were identified, with 3 being the major type. Flutrimazole, lanoconazole, and luliconazole presented the lower minimum inhibitory concentration (MIC) values against A. egyptiacum, with a geometric mean (GM) MIC of 2.50, 1.92, and 1.57 μg/mL, respectively. Amphotericin B, itraconazole, posaconazole, voriconazole, terbinafine, amorolfine, and griseofulvin MICs were overall high (GM 12.79–29.49 μg/mL). An analysis of variance performed on absolute values showed that flutrimazole, lanoconazole, and luliconazole were equivalent and notably lower than those of all the other drugs tested against A. egyptiacum. Antifungal susceptibility of the three different A. egyptiacum genotypes was homogeneous. Overall, the high MICs recorded for all systemically administered drugs, and for some topical antifungals against the tested A. egyptiacum and other acremonium-like clinical isolates, justify the routine susceptibility testing of clinical isolates. Full article
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<p>Neighbor-joining tree generated from complete internal transcribed spacer-derived sequences of 18 clinical strains and reference sequences of <span class="html-italic">Acremonium egyptiacum</span> strains. Strains belonging to each one of the three ITS barcode types described so far clustered together with the respective reference strains described before. Numbers above branches are bootstrap values.</p>
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<p>A confirmed (repeated isolation and positive direct microscopy) toenail white superficial onychomycosis case in a 40-year-old woman, caused by a type 3 <span class="html-italic">Acremonium egyptiacum</span> isolate. (<b>a</b>) White area on the surface of the first toenail. (<b>b</b>) Direct microscopy of nail clippings showing a branching hyphal structure (original magnification 400×). (<b>c</b>) First isolation directly from nail clippings on Sabouraud dextrose agar, showing multiple <span class="html-italic">A. egyptiacum</span> colony forming units, after incubation at 32 °C for 8 days. (<b>d</b>) Microscopy showing slimy heads on phialides (original magnification 400×).</p>
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12 pages, 899 KiB  
Article
Non-Zoonotic Transmission of Sporotrichosis: A Translational Study of Forty-Three Cases in a Zoonotic Hyperendemic Area
by Juliana Nahal, Rowena Alves Coelho, Fernando Almeida-Silva, Andréa Reis Bernardes-Engemann, Anna Carolina Procópio-Azevedo, Vanessa Brito de Souza Rabello, Rayanne Gonçalves Loureiro, Dayvison Francis Saraiva Freitas, Antonio Carlos Francesconi do Valle, Priscila Marques de Macedo, Manoel Marques Evangelista Oliveira, Margarete Bernardo Tavares da Silva, Rosely Maria Zancopé-Oliveira, Rodrigo Almeida-Paes, Maria Clara Gutierrez-Galhardo and Maria Helena Galdino Figueiredo-Carvalho
J. Fungi 2024, 10(9), 610; https://doi.org/10.3390/jof10090610 - 27 Aug 2024
Viewed by 1035
Abstract
Over the past two decades, zoonotic sporotrichosis transmitted by naturally infected cats has become hyperendemic in Rio de Janeiro, Brazil. Sporothrix brasiliensis is the main agent involved. However, there are other forms of transmission of sporotrichosis. The aim of this study was to [...] Read more.
Over the past two decades, zoonotic sporotrichosis transmitted by naturally infected cats has become hyperendemic in Rio de Janeiro, Brazil. Sporothrix brasiliensis is the main agent involved. However, there are other forms of transmission of sporotrichosis. The aim of this study was to evaluate and associate the epidemiological, clinical and therapeutic data and the susceptibility of Sporothrix spp. to antifungal drugs in 43 non-zoonotic sporotrichosis cases. Forty-three clinical strains of Sporothrix were identified by partial sequencing of the calmodulin gene. An antifungal susceptibility test of amphotericin B, terbinafine, itraconazole, posaconazole and isavuconazole was performed according to the broth microdilution method. Most patients were male (55.8%). Regarding the source of infection, 21 patients (48.8%) reported trauma involving plants and/or contact with soil. Sporothrix brasiliensis was the predominant species (n = 39), followed by S. globosa (n = 3) and S. schenckii (n = 1). Sporothrix brasiliensis was associated with all the sources of infection, reinforcing previous data showing the presence of this species in environmental sources, as well as with all the clinical forms, including severe cases. One clinical strain of Sporothrix brasiliensis was classified as a non-wild-type strain for amphotericin B and another for itraconazole. S. schenckii was classified as non-WT for all the antifungals tested. In this context, it is important to emphasize that non-zoonotic sporotrichosis still occurs in the state of Rio de Janeiro, with S. brasiliensis as the main etiological agent, primarily associated with infections acquired after traumatic inoculation with plants and/or soil contact, followed by S. globosa and S. schenckii. In addition, non-WT strains were found, indicating the need to monitor the antifungal susceptibility profile of these species. It is crucial to investigate other natural sources of S. brasiliensis to better understand this fungal pathogen and its environment and host cycle. Full article
(This article belongs to the Special Issue Fungal Infections of Implantation (Subcutaneous Mycoses), 2nd Edition)
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<p>Phylogenetic tree based on partial sequencing of the gene encoding calmodulin with 43 clinical strains and 25 (*) sequences from GenBank. Maximum likelihood method. Significance verified using the bootstrap confidence test with 1000 repetitions indicated in the nodes formed in the phylogenetic tree.</p>
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20 pages, 824 KiB  
Review
Treatments and the Perspectives of Developing a Vaccine for Chagas Disease
by Priscila Silva Grijó Farani, Kathryn Marie Jones and Cristina Poveda
Vaccines 2024, 12(8), 870; https://doi.org/10.3390/vaccines12080870 - 1 Aug 2024
Viewed by 1719
Abstract
Chagas disease (CD) treatment and vaccine development are critical due to the significant health burden caused by the disease, especially in Latin America. Current treatments include benznidazole and nifurtimox, which are most effective in the acute phase of the disease but less so [...] Read more.
Chagas disease (CD) treatment and vaccine development are critical due to the significant health burden caused by the disease, especially in Latin America. Current treatments include benznidazole and nifurtimox, which are most effective in the acute phase of the disease but less so in the chronic phase, often with significant side effects. Here, using the available literature, we summarize the progress in vaccine development and new treatments that promise to reduce CD incidence and improve the quality of life for those at risk, particularly in endemic regions. New treatment options, such as posaconazole and fexinidazole, are being explored to improve efficacy and reduce adverse effects. Vaccine development for CD remains a high priority. The complex life stages and genetic diversity of Trypanosoma cruzi present challenges, but several promising vaccine candidates are under investigation. These efforts focus on stimulating a protective immune response through various innovative approaches. Full article
(This article belongs to the Section Vaccines against Tropical and other Infectious Diseases)
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<p>Chagas vaccine development. Image created with the assistance of BioRender.</p>
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19 pages, 1799 KiB  
Article
Hard Gelatin Capsules with Alginate-Hypromellose Microparticles as a Multicompartment Drug Delivery System for Sustained Posaconazole Release
by Katarzyna Kruk and Katarzyna Winnicka
Int. J. Mol. Sci. 2024, 25(13), 7116; https://doi.org/10.3390/ijms25137116 - 28 Jun 2024
Viewed by 1225
Abstract
Microparticles as a multicompartment drug delivery system are beneficial for poorly soluble drugs. Mucoadhesive polymers applied in microparticle technology prolong the contact of the drug with the mucosa surface enhancing drug bioavailability and extending drug activity. Sodium alginate (ALG) and hydroxypropyl methylcellulose (hypromellose, [...] Read more.
Microparticles as a multicompartment drug delivery system are beneficial for poorly soluble drugs. Mucoadhesive polymers applied in microparticle technology prolong the contact of the drug with the mucosa surface enhancing drug bioavailability and extending drug activity. Sodium alginate (ALG) and hydroxypropyl methylcellulose (hypromellose, HPMC) are polymers of a natural or semi-synthetic origin, respectively. They are characterized by mucoadhesive properties and are applied in microparticle technology. Spray drying is a technology employed in microparticle preparation, consisting of the atomization of liquid in a stream of gas. In this study, the pharmaceutical properties of spray-dried ALG/HPMC microparticles with posaconazole were compared with the properties of physical mixtures of powders with equal qualitative and quantitative compositions. Posaconazole (POS) as a relatively novel antifungal was utilized as a model poorly water-soluble drug, and hard gelatin capsules were applied as a reservoir for designed formulations. A release study in 0.1 M HCl showed significantly prolonged POS release from microparticles compared to a mixture of powders. Such a relationship was not followed in simulated vaginal fluid (SVF). Microparticles were also characterized by stronger mucoadhesive properties, an increased swelling ratio, and prolonged residence time compared to physical mixtures of powders. The obtained results indicated that the pharmaceutical properties of hard gelatin capsules filled with microparticles were significantly different from hard gelatin capsules with mixtures of powders. Full article
(This article belongs to the Special Issue Functional Polymeric Materials: From Synthesis to Applications)
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<p>In vitro POS release from capsules containing MP1 and Mix1 formulations in 0.1 M HCl (<span class="html-italic">n</span> = 3).</p>
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<p>In vitro POS release from MP2 and Mix2 formulations in SVF (n = 3). (<b>a</b>)—capsules, (<b>b</b>)—after spilling out of the capsules into the release baskets.</p>
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<p>Mucoadhesive properties of formulations MP1, MP2, Mix1, and Mix2 (maximum detachment force F<sub>max</sub> and work of adhesion W<sub>ad</sub>).</p>
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<p>Swelling ratio of microparticles MP1 and MP2 and mixtures of powders Mix1 and Mix2 described as the volume of medium absorbed [µL/mg] (in 0.1 M HCl (<b>a</b>) and in SVF (<b>b</b>)).</p>
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<p>DSC thermogram of ALG, POS, HPMC, MP1, and Mix1 formulations.</p>
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25 pages, 937 KiB  
Review
Commercial Methods for Antifungal Susceptibility Testing of Saprophytic Molds: Can They Be Used to Detect Resistance?
by Paschalis Paranos, Ana Espinel-Ingroff and Joseph Meletiadis
J. Fungi 2024, 10(3), 214; https://doi.org/10.3390/jof10030214 - 14 Mar 2024
Cited by 1 | Viewed by 1997
Abstract
Commercial tests are often employed in clinical microbiology laboratories for antifungal susceptibility testing of filamentous fungi. Method-dependent epidemiological cutoff values (ECVs) have been defined in order to detect non-wild-type (NWT) isolates harboring resistance mechanisms. We reviewed the literature in order to find studies [...] Read more.
Commercial tests are often employed in clinical microbiology laboratories for antifungal susceptibility testing of filamentous fungi. Method-dependent epidemiological cutoff values (ECVs) have been defined in order to detect non-wild-type (NWT) isolates harboring resistance mechanisms. We reviewed the literature in order to find studies where commercial methods were used to evaluate for in vitro susceptibility of filamentous fungi and assess their ability to detect NWT isolates according to the available ECVs. Data were found for the gradient concentration strips Etest and MIC Test Strips (MTS), broth microdilution Sensititre YeastOne (SYO), Micronaut-AM and the agar dilution VIPcheck assays. Applying itraconazole, voriconazole and posaconazole Etest ECVs for A. fumigatus, Etest was able to detect 90.3% (84/93), 61.2% (90/147) and 86% (31/36) of isolates with known cyp51A mutations, respectively. Moreover, Etest also was able to detect 3/3 fks mutants using caspofungin ECVs and 2/3 micafungin mutant isolates. Applying the voriconazole and posaconazole SYO ECVs, 57.7% (67/116) and 100% (47/47) of mutants with known cyp51A substitutions were classified as NWT, respectively. VIPcheck detected 90.3% (159/176), 80.1% (141/176) and 66% (141/176)of mutants via itraconazole, voriconazole and posaconazole, respectively, whereas Micronaut-AM detected 88% (22/25). In conclusion, Etest posaconazole and itraconazole, as well as micafungin and caspofungin ECVs, detected A. fumigatus mutants. On the other hand, while the posaconazole SYO ECV was able to detect cyp51A mutants, similar data were not observed with the SYO voriconazole ECV. Full article
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<p>Commercial tests for antifungal susceptibility testing of filamentous fungi.</p>
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12 pages, 803 KiB  
Article
Antifungal Susceptibility of Saccharomyces cerevisiae Isolated from Clinical Specimens
by Aleksandra Górzyńska, Kamila Kondracka, Agnieszka Korzeniowska-Kowal and Urszula Nawrot
Pathogens 2024, 13(3), 248; https://doi.org/10.3390/pathogens13030248 - 14 Mar 2024
Cited by 2 | Viewed by 4504
Abstract
(1) Background: Despite being considered a non-pathogenic yeast, recently, a growing occurrence of Saccharomyces cerevisiae infections has been noted. There is little knowledge about the drug susceptibility of this species. Therefore, the objective of this research was to expand it and determine the [...] Read more.
(1) Background: Despite being considered a non-pathogenic yeast, recently, a growing occurrence of Saccharomyces cerevisiae infections has been noted. There is little knowledge about the drug susceptibility of this species. Therefore, the objective of this research was to expand it and determine the drug susceptibility profile of a local collection of clinical isolates of this species. (2) Methods: This study contained 55 clinical isolates identified as Saccharomyces cerevisiae using the MALDI-TOF method. The susceptibility of Saccharomyces cerevisiae was tested to 10 antifungals (amphotericin B, flucytosine, fluconazole, voriconazole, posaconazole, micafungin, anidulafungin, caspofungin, and itraconazole) using MICRONAUT-AT tests and manogepix, a new drug, using the microdilution method according to EUCAST. (3) Results: Overall, most strains were classified as sensitive to amphotericin B and flucytosine (MIC ranges of ≤0.03–1 and ≤0.06–0.125, respectively) and also to echinocandins. However, five isolates expressed high MIC values for all of the tested azoles, indicating cross-resistance. The MIC range for manogepix was 0.001–0.125 mg/L, with an MIC50 of 0.03 mg/L and an MIC90 of 0.06 mg/L. (4) Conclusions: The occurrence of resistance to azoles may be a concerning problem and therefore should be investigated further. However, the new antifungal manogepix appears to be an interesting new therapeutic option for treating such infections. Full article
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<p>The distribution of MIC values of nine antimycotics for <span class="html-italic">Saccharomyces cerevisiae</span> strains obtained through the use of MICRONAUT-AT tests.</p>
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<p>Susceptibility of clinical isolates of <span class="html-italic">S. cerevisiae</span> to manogepix.</p>
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20 pages, 2868 KiB  
Article
Associations between Genomic Variants and Antifungal Susceptibilities in the Archived Global Candida auris Population
by Yue Wang and Jianping Xu
J. Fungi 2024, 10(1), 86; https://doi.org/10.3390/jof10010086 - 22 Jan 2024
Cited by 3 | Viewed by 2901
Abstract
Candida auris is a recently emerged human fungal pathogen that has posed a significant threat to public health. Since its first identification in 2009, this fungus has caused nosocomial infections in over 47 countries across all inhabited continents. As of May 2023, the [...] Read more.
Candida auris is a recently emerged human fungal pathogen that has posed a significant threat to public health. Since its first identification in 2009, this fungus has caused nosocomial infections in over 47 countries across all inhabited continents. As of May 2023, the whole-genome sequences of over 4000 strains have been reported and a diversity of mutations, including in genes known to be associated with drug resistance in other human fungal pathogens, have been described. Among them, 387 strains contained antifungal-susceptibility information for which different methods might be used depending on the drugs and/or investigators. In most reports on C. auris so far, the number of strains analyzed was very small, from one to a few dozen, and the statistical significance of the relationships between these genetic variants and their antifungal susceptibilities could not be assessed. In this study, we conducted genome-wide association studies on individual clades based on previously published C. auris isolates to investigate the statistical association between genomic variants and susceptibility differences to nine antifungal drugs belonging to four major drug categories: 5-fluorocytosine, amphotericin B, fluconazole, voriconazole, itraconazole, posaconazole, anidulafungin, caspofungin, and micafungin. Due to the small sample sizes for Clades II, V, and VI, this study only assessed Clades I, III, and IV. Our analyses revealed 15 single nucleotide polymorphisms (SNPs) in Clade I (10 in coding and 5 in noncoding regions), 24 SNPs in Clade III (11 in coding and 13 in noncoding regions), and 13 SNPs in clade IV (10 in coding and 3 in noncoding regions) as statistically significantly associated with susceptibility differences to one or more of the nine antifungal drugs. While four SNPs in genes encoding lanosterol 14-α-demethylase (ERG11) and the catalytic subunit of 1,3-beta-D-glucan synthase (FKS1) were shared between clades, including the experimentally confirmed Ser639Phe/Pro missense substitutions in FKS1 for echinocandin resistance, most of the identified SNPs were clade specific, consistent with their recent independent origins. Interestingly, the majority of the antifungal resistance-associated SNPs were novel, and in genes and intergenic regions that have never been reported before as associated with antifungal resistance. While targeted study is needed to confirm the role of each novel SNP, the diverse mechanisms of drug resistance in C. auris revealed here indicate both challenges for infection control and opportunities for the development of novel antifungal drugs against this and other human fungal pathogens. Full article
(This article belongs to the Special Issue New Perspectives for Candidiasis 2.0)
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<p>Histograms depicting the distributions of MICs (μg/mL) among strains for each clade against different drugs. Y-axis depicts the counts while x-axis depicts the MIC values, with 10<sup>−2</sup>, 10<sup>−1</sup>, 10<sup>0</sup>, 10<sup>1</sup>, and 10<sup>2</sup> on the x-axis being equivalent to 0.01, 0.1, 1, 10, and 100 μg/mL.</p>
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<p>QQ plots and Manhattan plots showing genome-wide SNPs associated with antifungal-susceptibility differences among strains within Clade I. The left panel displays the QQ plots for five GWAS analyses, while the right panel presents the Manhattan plots. Plots are arranged from top to bottom in the following order: FLU, AMB, CAS, MFG, and AFG. The QQ plots display the expected −log10 (<span class="html-italic">p</span>-value) on the X-axis and the observed −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The Manhattan plots are depicted with scaffold position on the X-axis and the −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The significant <span class="html-italic">p</span>-value threshold for the SNPs is represented by green lines on the Manhattan plots.</p>
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<p>QQ plots and Manhattan plots showing genome-wide SNPs associated with antifungal-susceptibility differences among strains within Clade III. The left panel displays the QQ plots for five GWAS analyses, while the right panel presents the Manhattan plots. Plots are arranged from top to bottom in the following order: FLU, CAS (FarmCPU; BLINK), MFG (FarmCPU; BLINK), and AFG (FarmCPU; BLINK). The QQ plots display the expected −log10 (<span class="html-italic">p</span>-value) on the X-axis and the observed −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The Manhattan plots are depicted with scaffold position on the X-axis and the −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The significant <span class="html-italic">p</span>-value threshold for the SNPs is represented by green lines on the Manhattan plots.</p>
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<p>QQ plots and Manhattan plots showing genome-wide SNPs associated with antifungal-susceptibility differences among strains within Clade IV. The left panel displays the QQ plots for three GWAS analyses, while the right panel presents the Manhattan plots. Plots are arranged from top to bottom in the following order: VOR, CAS (FarmCPU; BLINK), and MFG. The QQ plots display the expected −log10 (<span class="html-italic">p</span>-value) on the X-axis and the observed −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The Manhattan plots are depicted with scaffold position on the X-axis and the −log10 (<span class="html-italic">p</span>-value) on the Y-axis. The significant <span class="html-italic">p</span>-value threshold for the SNPs is represented by green lines on the Manhattan plots.</p>
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36 pages, 433 KiB  
Review
High-Risk Neutropenic Fever and Invasive Fungal Diseases in Patients with Hematological Malignancies
by Giovanni Mori, Sara Diotallevi, Francesca Farina, Riccardo Lolatto, Laura Galli, Matteo Chiurlo, Andrea Acerbis, Elisabetta Xue, Daniela Clerici, Sara Mastaglio, Maria Teresa Lupo Stanghellini, Marco Ripa, Consuelo Corti, Jacopo Peccatori, Massimo Puoti, Massimo Bernardi, Antonella Castagna, Fabio Ciceri, Raffaella Greco and Chiara Oltolini
Microorganisms 2024, 12(1), 117; https://doi.org/10.3390/microorganisms12010117 - 6 Jan 2024
Cited by 1 | Viewed by 3343
Abstract
Invasive fungal diseases (IFDs) still represent a relevant cause of mortality in patients affected by hematological malignancies, especially acute myeloid leukaemia (AML) and myelodysplastic syndrome (MDS) undergoing remission induction chemotherapy, and in allogeneic hematopoietic stem cell transplantation (allo-HSCT) recipients. Mold-active antifungal prophylaxis (MAP) [...] Read more.
Invasive fungal diseases (IFDs) still represent a relevant cause of mortality in patients affected by hematological malignancies, especially acute myeloid leukaemia (AML) and myelodysplastic syndrome (MDS) undergoing remission induction chemotherapy, and in allogeneic hematopoietic stem cell transplantation (allo-HSCT) recipients. Mold-active antifungal prophylaxis (MAP) has been established as a standard of care. However, breakthrough IFDs (b-IFDs) have emerged as a significant issue, particularly invasive aspergillosis and non-Aspergillus invasive mold diseases. Here, we perform a narrative review, discussing the major advances of the last decade on prophylaxis, the diagnosis of and the treatment of IFDs in patients with high-risk neutropenic fever undergoing remission induction chemotherapy for AML/MDS and allo-HSCT. Then, we present our single-center retrospective experience on b-IFDs in 184 AML/MDS patients undergoing high-dose chemotherapy while receiving posaconazole (n = 153 induction treatments, n = 126 consolidation treatments, n = 60 salvage treatments). Six cases of probable/proven b-IFDs were recorded in six patients, with an overall incidence rate of 1.7% (6/339), which is in line with the literature focused on MAP with azoles. The incidence rates (IRs) of b-IFDs (95% confidence interval (95% CI), per 100 person years follow-up (PYFU)) were 5.04 (0.47, 14.45) in induction (n = 2), 3.25 (0.0013, 12.76) in consolidation (n = 1) and 18.38 (3.46, 45.06) in salvage chemotherapy (n = 3). Finally, we highlight the current challenges in the field of b-IFDs; these include the improvement of diagnoses, the expanding treatment landscape of AML with molecular targeted drugs (and related drug–drug interactions with azoles), evolving transplantation techniques (and their related impacts on IFDs’ risk stratification), and new antifungals and their features (rezafungin and olorofim). Full article
18 pages, 5326 KiB  
Article
Surfactin and Capric Acid Affect the Posaconazole Susceptibility of Candida albicans Strains with Altered Sterols and Sphingolipids Biosynthesis
by Daria Derkacz, Monika Grzybowska, Liliana Cebula and Anna Krasowska
Int. J. Mol. Sci. 2023, 24(24), 17499; https://doi.org/10.3390/ijms242417499 - 15 Dec 2023
Viewed by 1436
Abstract
Infections caused by Candida spp. pose a continuing challenge for modern medicine, due to widespread resistance to commonly used antifungal agents (e.g., azoles). Thus, there is considerable interest in discovering new, natural compounds that can be used in combination therapy with conventional antibiotics. [...] Read more.
Infections caused by Candida spp. pose a continuing challenge for modern medicine, due to widespread resistance to commonly used antifungal agents (e.g., azoles). Thus, there is considerable interest in discovering new, natural compounds that can be used in combination therapy with conventional antibiotics. Here, we investigate whether the natural compounds surfactin and capric acid, in combination with posaconazole, enhance the growth inhibition of C. albicans strains with alterations in sterols and the sphingolipids biosynthesis pathway. We demonstrate that combinations of posaconazole with surfactin or capric acid correspond with the decreased growth of C. albicans strains. Moreover, surfactin and capric acid can independently contribute to the reduced adhesion of C. albicans strains with altered ergosterol biosynthesis to abiotic surfaces (up to 90% reduction in adhesion). A microscopic study of the C. albicans plasma membrane revealed that combinations of those compounds do not correspond with the increased permeabilization of the plasma membrane when compared to cells treated with posaconazole alone. This suggests that the fungistatic effect of posaconazole in combination with surfactin or capric acid is related to the reduction in adhesion of C. albicans. Full article
(This article belongs to the Section Molecular Microbiology)
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<p>Chemical structure of posaconazole (PSZ).</p>
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<p>Chemical structure of surfactin (SU (<b>A</b>)) and capric acid (CA (<b>B</b>)).</p>
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<p>Growth (%) of <span class="html-italic">C. albicans</span> strains with the deletion of <span class="html-italic">ERG11</span> gene or with amino acid substitutions in Erg11p in the presence of PSZ (0–0.125 µg/mL) with or without the addition of SU (0–32 µg/mL). The <span class="html-italic">C. albicans</span> SC5314 (WT (<b>A</b>)), KS058 (<span class="html-italic">erg11Δ/Δ</span> (<b>B</b>)), 10C1B1I1 (<span class="html-italic">ERG11<sup>K143R</sup></span> (<b>C</b>)), 27A5A33A (<span class="html-italic">ERG11<sup>Y132F,F145L</sup></span> (<b>D</b>)) and 9B4B34A (<span class="html-italic">ERG11<sup>Y132F,K143R</sup></span> (<b>E</b>)) strains were cultured stationary for 24 h at a temperature of 28 °C. The experiment was performed in 3 replicates and obtained data were analyzed using Student’s t-test (*, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001). The data for <span class="html-italic">C. albicans</span> KS058, 10C1B1I1, 27A5A33A and 9B4B34A strains were compared to those obtained for <span class="html-italic">C. albicans</span> SC5314 (WT) in certain concentrations of PSZ or SU.</p>
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<p>Growth (%) of <span class="html-italic">C. albicans</span> strains with deletion of genes involved in sphingolipids (SLs) biosynthesis in the presence of PSZ (0–0.125 µg/mL) with or without addition of SU (0–32 µg/mL). The <span class="html-italic">C. albicans</span> SN95 (WT (<b>A</b>)), <span class="html-italic">fen1Δ/Δ (</span><b>B</b>), <span class="html-italic">fen12Δ/Δ</span> (<b>C</b>) and <span class="html-italic">fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span> (<b>D</b>) strains were cultured stationary for 24 h at a temperature of 28 °C. The experiment was performed in 3 replicates and obtained data were analyzed using Student’s t-test (*, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001). The data for <span class="html-italic">C. albicans fen1Δ/Δ</span>, <span class="html-italic">fen12Δ/Δ</span> and <span class="html-italic">fen1Δ/Δ</span> and <span class="html-italic">fen12Δ/Δ</span> strains were compared to those obtained for <span class="html-italic">C. albicans</span> SN95 (WT) in certain concentrations of PSZ or SU.</p>
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<p>Growth (%) of <span class="html-italic">C. albicans</span> strains with the deletion of the <span class="html-italic">ERG11</span> gene or with amino acid substitutions in Erg11p in the presence of PSZ (0–0.125 µg/mL) with or without the addition of capric acid (0–90.60 µg/mL). The <span class="html-italic">C. albicans</span> SC5314 (WT (<b>A</b>)), KS058 (<span class="html-italic">erg11Δ/Δ</span> (<b>B</b>)), 10C1B1I1 (<span class="html-italic">ERG11<sup>K143R</sup></span> (<b>C</b>)), 27A5A33A (<span class="html-italic">ERG11<sup>Y132F,F145L</sup></span> (<b>D</b>)) and 9B4B34A (<span class="html-italic">ERG11<sup>Y132F,K143R</sup></span> (<b>E</b>)) strains were cultured stationary for 24 h at a temperature of 28 °C. The experiment was performed in 3 replicates and obtained data were analyzed using Student’s t-test (*, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001). The data for <span class="html-italic">C. albicans</span> KS058, 10C1B1I1, 27A5A33A and 9B4B34A strains were compared to those obtained for <span class="html-italic">C. albicans</span> SC5314 (WT) in certain concentrations of PSZ or SU.</p>
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<p>Growth (%) of <span class="html-italic">C. albicans</span> strains with the deletion of genes involved in sphingolipids (SLs) biosynthesis in the presence of PSZ (0–0.125 µg/mL) with or without the addition of capric acid (0–90.60 µg/mL). The <span class="html-italic">C. albicans</span> SN95 (WT (<b>A</b>)), <span class="html-italic">fen1Δ/Δ</span> (<b>B</b>), <span class="html-italic">fen12Δ/Δ</span> (<b>C</b>) and <span class="html-italic">fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span> (<b>D</b>) strains were cultured stationary for 24 h at a temperature of 28 °C. The experiment was performed in 3 replicates and obtained data were analyzed using Student’s t-test (*, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001). The data for <span class="html-italic">C. albicans fen1Δ/Δ</span>, <span class="html-italic">fen12Δ/Δ</span> and <span class="html-italic">fen1Δ/Δ;fen12Δ/Δ</span> strains were compared to those obtained for <span class="html-italic">C. albicans</span> SN95 (WT) in certain concentrations of PSZ or SU.</p>
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<p>Growth curves of <span class="html-italic">C. albicans</span> strains with deletion of <span class="html-italic">ERG11</span> gene or with amino acid substitutions in Erg11p under control conditions (YPD), in the presence of PSZ (0.0156 µg/mL) with or without the addition of surfactin (4 µg/mL; PSZ = 0.0156 µg/mL) or capric acid (45.3 µg/mL; PSZ = 0.0078 µg/mL). The <span class="html-italic">C. albicans</span> SC5314 (WT (<b>A</b>)), KS058 (<span class="html-italic">erg11Δ/Δ</span> (<b>B</b>)), 10C1B1I1 (<span class="html-italic">ERG11<sup>K143R</sup></span> (<b>C</b>)), 27A5A33A (<span class="html-italic">ERG11<sup>Y132F,F145L</sup></span> (<b>D</b>)) and 9B4B34A (<span class="html-italic">ERG11<sup>Y132F,K143R</sup></span> (<b>E</b>)) strains were cultured for 24 h (or 48 h in the case of KS058 strain) at a temperature of 28 °C, with shaking (120 rpm). The experiment was performed in 3 replicates and the figure represents mean absorbance (λ = 600 nm) ± SD.</p>
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<p>Growth curves of <span class="html-italic">C. albicans</span> strains with deletion of genes involved in sphingolipids (SLs) biosynthesis in the presence of PSZ (0.0156 µg/mL) with or without the addition of surfactin (4 µg/mL) or capric acid (22.7 µg/mL or for <span class="html-italic">fen1Δ/Δ</span> and <span class="html-italic">fen12Δ/Δ</span> strain 11.35 µg/mL). The <span class="html-italic">C. albicans</span> SN95 (WT <span class="html-italic">(</span><b>A</b>)), <span class="html-italic">fen1Δ/Δ</span> (<b>B</b>), <span class="html-italic">fen12Δ/Δ</span> (<b>C</b>) and <span class="html-italic">fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span> (<b>D</b>) strains were cultured for 24 h (or 48 h in case of <span class="html-italic">fen1Δ/Δ</span> and <span class="html-italic">fen12Δ/Δ</span> strain) at a temperature of 28 °C, with shaking (120 rpm). The experiment was performed in 3 replicates and the figure represents mean absorbance (λ = 600 nm) ± SD.</p>
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<p>The adhesion (%) of <span class="html-italic">C. albicans</span> strains with altered ergosterol (SC5314 (WT), KS058, 10C1B1I1, 27A5A33A and 9B4B34A (<b>A</b>)) or sphingolipids biosynthesis (SN95 (WT), <span class="html-italic">fen1Δ/Δ</span>, <span class="html-italic">fen12Δ/Δ</span> and <span class="html-italic">fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span>) to abiotic surface under control conditions (PBS) or in the presence of surfactin (SU, 4 μg/mL) or capric acid (CA = 45.3 μg/mL for strains at (<b>A</b>); 22.7 μg/mL for strains at (<b>B</b>) or 11.35 μg/mL for <span class="html-italic">C. albicans fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span> strain). The data obtained for <span class="html-italic">C. albicans</span> strains incubated with SU or CA were compared to those under control conditions. The experiment was performed in 6 replicates and obtained data were analyzed using Student’s t-test (*, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001).</p>
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<p>The permeabilization of the plasma membrane (PM) of <span class="html-italic">C. albicans</span> strains SC5314 (WT), KS058, 10C1B1I1, 27A5A33A and 9B4B34A after 24 h of culturing with or without the presence of PSZ (0.0156 μg/mL), PSZ with SU (0.0156 with 4 μg/mL, respectively), or PSZ with CA (0.0078 with 45.3 μg/mL, respectively). The cells were stained with propidium iodide (PI, 4 μg/mL) for 5 min and then analyzed for PM permeabilization. The figure contains the representative microphotographs (scalebar = 50 µm). For every strain under each condition, at least 150 cells were analyzed.</p>
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<p>The permeabilization of the plasma membrane (PM) of <span class="html-italic">C. albicans</span> strains SN95 (WT), <span class="html-italic">fen1Δ/Δ</span>, <span class="html-italic">fen12Δ/Δ</span> and <span class="html-italic">fen1Δ/Δ</span>;<span class="html-italic">fen12Δ/Δ</span> after 24 h culture with or without the presence of PSZ (0.0156 μg/mL), PSZ with SU (0.0156 with 4 μg/mL, respectively) or PSZ with CA (0.0156 with 22.7 μg/mL or 0.0156 μg/mL with 11.35 μg/mL for <span class="html-italic">fen1Δ/Δ</span> and <span class="html-italic">fen12Δ/Δ</span> strain, respectively). The cells were stained with propidium iodide (PI, 4 μg/mL) for 5 min and then analyzed for PM permeabilization. The figure contains representative microphotographs (scalebar = 50 µm). For every strain under each condition, at least 150 cells were analyzed.</p>
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16 pages, 2370 KiB  
Article
Phenotypical Screening of an MMV Open Box Library and Identification of Compounds with Antiviral Activity against St. Louis Encephalitis Virus
by Giuliana Eboli Sotorilli, Humberto Doriguetto Gravina, Ana Carolina de Carvalho, Jacqueline Farinha Shimizu, Marina Alves Fontoura, Talita Diniz Melo-Hanchuk, Artur Torres Cordeiro and Rafael Elias Marques
Viruses 2023, 15(12), 2416; https://doi.org/10.3390/v15122416 - 13 Dec 2023
Viewed by 1455
Abstract
St. Louis encephalitis virus (SLEV) is a neglected mosquito-borne Flavivirus that may cause severe neurological disease in humans and other animals. There are no specific treatments against SLEV infection or disease approved for human use, and drug repurposing may represent an opportunity to [...] Read more.
St. Louis encephalitis virus (SLEV) is a neglected mosquito-borne Flavivirus that may cause severe neurological disease in humans and other animals. There are no specific treatments against SLEV infection or disease approved for human use, and drug repurposing may represent an opportunity to accelerate the development of treatments against SLEV. Here we present a scalable, medium-throughput phenotypic cell culture-based screening assay on Vero CCL81 cells to identify bioactive compounds that could be repurposed against SLEV infection. We screened eighty compounds from the Medicines for Malaria Venture (MMV) COVID Box library to identify nine (11%) compounds that protected cell cultures from SLEV-induced cytopathic effects, with low- to mid-micromolar potencies. We validated six hit compounds using viral plaque-forming assays to find that the compounds ABT-239, Amiodarone, Fluphenazine, Posaconazole, Triparanol, and Vidofludimus presented varied levels of antiviral activity and selectivity depending on the mammalian cell type used for testing. Importantly, we identified and validated the antiviral activity of the anti-flavivirus nucleoside analog 7DMA against SLEV. Triparanol and Fluphenazine reduced infectious viral loads in both Vero CCL81 and HBEC-5i cell cultures and, similar to the other validated compounds, are likely to exert antiviral activity through a molecular target in the host. Full article
(This article belongs to the Section Viral Immunology, Vaccines, and Antivirals)
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Figure 1

Figure 1
<p>Medium-throughput screening pipeline to identify antiviral compounds against St. Louis encephalitis virus infection. (1) The MMV COVID Box library, which comprises eighty compounds with known or predicted activity against SARS-CoV-2, was screened at 20 µM using a phenotypical assay of SLEV infection in cell culture. Briefly, hit compounds were selected based on their ability to reduce the CPE induced by SLEV infection in Vero CCL81 cells, which was quantified by a high-content fluorescence microscope detecting Hoechst-stained nuclei in cell cultures. Nine hit compounds were selected due to inhibition of at least 40% of the CPE induced by viral infection at 72 h post-infection. (2) Six compounds were resupplied for the confirmatory assay. Dose–response curves were created for Vero CCL81 cell cultures for the calculation of EC<sub>50</sub> and CC<sub>50</sub> values. (3) Hit validation was performed using Vero and the human cell lines HBEC-5i and HUH-7. The antiviral activity was confirmed by plaque-forming assays. (4) The pipeline led to the identification of Triparanol and Fluphenazine with antiviral activity against SLEV infection.</p>
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<p>Identification of cytoprotective compounds against SLEV infection in the MMV COVID Box. (<b>A</b>) Correlation of two screening runs of the compound library at 20 µM for the ability to reduce the CPE induced by SLEV infection in Vero cells after 72 h. The positive (non-infected cells treated with vehicle) and negative (SLEV-infected cells treated with vehicle) groups are represented by dark blue and red, respectively. 7DMA was used as a positive control for treatment and tested at 40 µM. Of the eighty compounds screened, nine inhibited at least 40% of CPE and were classified as hit compounds. The cut-off and range adopted to select the hit compounds are highlighted in gray. (<b>B</b>) Chemical structure of hit compounds from the MMV COVID Box and the treatment positive control 7DMA. * 7-deaza-2′-C-methyladenosine (7DMA) was included within the set of compounds as a treatment positive control for CPE inhibition, due to its reported antiviral activity against other flaviviruses. (<b>C</b>) EC<sub>50</sub>, CC<sub>50</sub>, and Selectivity Index (SI) values for confirmed hit compounds, including 7DMA as a positive control. Values of EC<sub>50</sub>/CC<sub>50</sub> were calculated from technical replicates of the dose–response curve ranging from 100 µM to 0.32 µM of drug concentration.</p>
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<p>Hit compound validation of antiviral activity against SLEV in Vero CCL81 cells. (<b>A</b>) Compound cytotoxicity was assessed through MTT assay. (<b>B</b>) Viral load measured by plaque assay. (<b>C</b>) Plaque assays of the most promising hits in Vero cells. A serial dilution ranging from 10<sup>−1</sup> to 10<sup>−6</sup> was performed on each sample. The antiviral activity of compounds promoted the reduction in lysis plates in comparison to positive control (vehicle-treated group). ** <span class="html-italic">p</span> &lt; 0.01, **** <span class="html-italic">p</span> &lt; 0.0001 relative to the virus-infected, vehicle-treated control group. Data represent two independent experiments (<span class="html-italic">n</span> = 6).</p>
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<p>Hit compound validation of antiviral activity against SLEV in Huh-7 and HBEC-5i cells. Cytotoxicity and antiviral activity of hit compounds were measured by MTT assay and plaque assay in (<b>A</b>,<b>B</b>) Huh-7 and (<b>C</b>,<b>D</b>) HBEC-5i cell lines, respectively. The experiments were performed after 48 h of infection at MOI of 0.1. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001 relative to the virus-infected, vehicle-treated control group. Data represent two independent experiments (<span class="html-italic">n</span> = 6).</p>
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<p>Triparanol and Fluphenazine have antiviral activity against SLEV infection in HBEC-5i cells. Cytotoxicity and antiviral activity of Triparanol (<b>A</b>,<b>B</b>) and Fluphenazine (<b>C</b>,<b>D</b>) at lower concentrations ranging from 20 µM to 2.5 µM were measured by MTT assay and plaque assay in HBEC-5i cells. The experiments were performed after 48 h of infection at MOI of 0.1. * <span class="html-italic">p</span>  &lt;  0.05, ** <span class="html-italic">p</span>  &lt;  0.01, *** <span class="html-italic">p</span>  &lt;  0.001 relative to the virus-infected, vehicle-treated control group. Data represent two independent experiments (<span class="html-italic">n</span> = 6).</p>
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<p>Interaction network of compounds with validated antiviral activity against SLEV. (<b>A</b>) Circle-shaped nodes indicate reported protein targets of ABT-239, Amiodarone, Fluphenazine, Posaconazole, Triparanol, and Vidofludimus according to Metacore. Targets were manually categorized and color-coded based on their association with respective drugs. Red nodes represent shared targets for two or more compounds. (<b>B</b>) Biological process enrichment analysis of overlapped targets. (<b>C</b>) Cellular compartment enrichment analysis of overlapped targets.</p>
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