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9 pages, 741 KiB  
Article
Positive Correlation of Social Rank and Hair Cortisol Concentration in Group-Housed Pregnant Cows
by Shigeru Ninomiya, Ayumi Nishi, Ririka Nakamura and Mitsuhiro Shibata
Animals 2025, 15(1), 13; https://doi.org/10.3390/ani15010013 - 24 Dec 2024
Viewed by 10
Abstract
In intensive beef production systems, social dominance relationships among cattle and human-cattle relationships constantly affect cattle welfare. However, these factors have not been investigated to assess their long-term effects on cattle welfare. In this study, the relations of hair cortisol concentrations of group-housed [...] Read more.
In intensive beef production systems, social dominance relationships among cattle and human-cattle relationships constantly affect cattle welfare. However, these factors have not been investigated to assess their long-term effects on cattle welfare. In this study, the relations of hair cortisol concentrations of group-housed pregnant cows with their social rank and avoidance distance when approached by humans were analysed. Thirty-two Japanese black cows were used in this study. Examinations were conducted six times throughout two years, and each cow was subjected to one–three examinations. Hair sampling was conducted on each examination day. The hair cortisol concentrations were measured using a cortisol enzyme immunoassay kit. Social behaviour recordings were made about 6 h on each examination day. The numbers of occurrences of butt, threat, chase, and avoidance behaviours of each animal were recorded using continuous recording methods, and the social rank score for each animal was calculated from the data. Avoidance distances from humans approaching were measured for 23 test cows during the first three examination days. Measurements were taken 5–10 min after the start of morning feeding. The relations between the hair cortisol concentration and social rank score or avoidance distance were analysed using a mixed-effects model or correlation analysis. Significant positive correlation was found between the social rank score and hair cortisol concentration (F1, 48 = 4.54, p = 0.038). No significant correlation was found between the cows’ responsiveness to humans and their hair cortisol concentration (r = −0.004, p = 0.99, n = 23). The findings suggest that low-ranking cows had lower cortisol levels. Full article
(This article belongs to the Section Animal Welfare)
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Figure 1

Figure 1
<p>The construction of the examination pen. The dotted line indicated headlocks. The width of the pen differed according to the number of housed cows.</p>
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<p>Relationship between social rank score and hair cortisol concentration.</p>
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<p>Relationship between avoidance distance and hair cortisol concentration.</p>
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19 pages, 5637 KiB  
Article
Gel Cleaning in Heritage: Comparison of the Water Release among Gels and Traditional Pads
by Antonio Sansonetti, Cristiano Riminesi, Sónia Mironiouk, Noemi Proietti, Valeria Di Tullio, Roberto Nisticò, Barbara Sacchi and Carmen Canevali
Gels 2024, 10(11), 708; https://doi.org/10.3390/gels10110708 - 2 Nov 2024
Viewed by 864
Abstract
Water release is a crucial aspect when considering cleaning effects on water-sensitive materials. In conservation practice, a water-based cleaning method which limits water release is very often needed. Unfortunately, this is not accompanied by an appropriate measure of the effectively released water. In [...] Read more.
Water release is a crucial aspect when considering cleaning effects on water-sensitive materials. In conservation practice, a water-based cleaning method which limits water release is very often needed. Unfortunately, this is not accompanied by an appropriate measure of the effectively released water. In this paper, water release has been measured by comparing traditional cleaning formulations, such as paper pulp and sepiolite, with several gar gel formulations, used by both Italian and European conservators. The assessment has been carried out by the gravimetric method, using three different stone material specimens as reference: Noto calcarenite, Manciano sandstone and Black Bergamo limestone, whose porosity values and distributions are known. Moreover, water distribution has been evaluated by portable NMR tests. Different commercial agar gel products (Bresciani, CTS, Sigma), having different concentrations (3, 4, and 5%), application modes (rigid at room T or fluid warm gels, with and without inserting Japanese tissue paper), and geometry (horizontal in gravity force direction or vertical), have been compared to obtain a full scenario among different water release mechanisms present in real conservation works. The paper faces the important issue of preparing reproducible chemical or water pads as well, useful for further research aimed at comparing cleaning effects in heritage conservation. The most interesting quantitative results can be summarized as follows. The water release measured from paper pulp and sepiolite was found to be 2 to 4 times higher than from any tested agar gel. Water release decreases by increasing agar concentration; an increase in the agar concentration by 1% induces a decrease in water release in the range 16.98–66.88 g depending on the stone; the increase from 4% to 5% is more obvious with respect to that from 3% to 4%. It is possible to assess the effect of the presence of Japanese paper, which is able to reduce the water release from 18 to 76%, depending on the stone and on the agar used. The gravimetric results were also used in the preliminary calibration tests of a contact probe named System Unit Salinity Index (SUSI), recently patented and useful in providing humidity and salinity indexes in a given porous material. Full article
(This article belongs to the Special Issue Gel Materials for Heritage Conservation)
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Figure 1
<p>(<b>a</b>) Water released on Noto calcarenite. (<b>b</b>) Water released on Manciano sandstone. (<b>c</b>) Water released on Bergamo Black limestone.</p>
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<p>(<b>a</b>) Water released on Noto calcarenite. (<b>b</b>) Water released on Manciano sandstone. (<b>c</b>) Water released on Bergamo Black limestone.</p>
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<p>Amount of water absorbed for surface unit vs. time in min (CTS Agar 3% on Noto calcarenite, Manciano sandstone, and Black limestone).</p>
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<p>(<b>a</b>) Water released on Noto Calcarenite by gels as a function of Bresciani Agar percentage (3%, 4%, 5%). (<b>b</b>) Water released on Manciano Sandstone by gels as a function of Bresciani Agar percentage (3%, 4%, 5%). (<b>c</b>) Water released on Black limestone by Gels as a function of Bresciani Agar percentage (3%, 4%, 5%).</p>
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<p>(<b>a</b>) Water released on Noto Calcarenite by gels as a function of Bresciani Agar percentage (3%, 4%, 5%). (<b>b</b>) Water released on Manciano Sandstone by gels as a function of Bresciani Agar percentage (3%, 4%, 5%). (<b>c</b>) Water released on Black limestone by Gels as a function of Bresciani Agar percentage (3%, 4%, 5%).</p>
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<p>(<b>a</b>) Noto calcarenite water release in vertical and horizontal geometry by CTS Agar 3% gel. (<b>b</b>) Manciano sandstone water release in vertical and horizontal geometry by CTS Agar 3% gel.</p>
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<p>(<b>a</b>) Noto calcarenite water release by Bresciani Agar 4%, applied as warm fluid and as rigid gel. (<b>b</b>) Manciano sandstone water release by Bresciani Agar 4%, applied as warm fluid and as rigid gel.</p>
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<p>(<b>a</b>) Noto calcarenite. Comparison of water release with and without the Japanese paper. CTS Agar 3% and Bresciani Agar 3%. (<b>b</b>) Manciano sandstone. Comparison of water release with and without the Japanese paper. CTS Agar 3% and Bresciani Agar 3%. (<b>c</b>) Black limestone. Comparison of water release with and without the Japanese paper. CTS Agar 3% and Bresciani Agar 3%.</p>
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<p>¹H NMR depth profiles for Noto stone (<b>a</b>), Manciano stone (<b>b</b>), and Black limestone (<b>c</b>) after the application of Sepiolite, Agar CTS, and Agar Bresciani at 3% concentration for 30 min.</p>
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<p>(<b>a</b>) Noto calcarenite Moisture content (MC%) after water release by traditional and CTS Agar 3%. (<b>b</b>) Comparison of the moisture content (MC%) released on the three different stones. (<b>c</b>) Comparison of the water released by CTS Agar 3% on the three different stones.</p>
Full article ">Figure 8 Cont.
<p>(<b>a</b>) Noto calcarenite Moisture content (MC%) after water release by traditional and CTS Agar 3%. (<b>b</b>) Comparison of the moisture content (MC%) released on the three different stones. (<b>c</b>) Comparison of the water released by CTS Agar 3% on the three different stones.</p>
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<p>From left to right: Noto calcarenite, Manciano sandstone, Bergamo black limestone with rigid Bresciani agar gel 3%.</p>
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<p>Synoptic scheme of the overall comparison among gels.</p>
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<p>(<b>a</b>) SUSI© system consisting of: scalar network analyzer (SNA), notebook (NB), and EFD-P probe; (<b>b</b>) the solid line is the frequency response for the unloaded resonant probe, the dotted line is the behavior for the probe in contact with the material under investigation (humidity and salt quantity not specified).</p>
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12 pages, 2597 KiB  
Article
Identification and Characterization of Germ Cell Genes Vasa and Nanos-2 in the Ovary and Testis of White Crappie (Pomoxis annularis) and the Ovary of Black Crappie (P. nigromaculatus)
by Sujan Bhattarai, Nilima N. Renukdas, Anita M. Kelly, Amit Kumar Sinha, Sanjay Joshi and Dayan A. Perera
Fishes 2024, 9(10), 394; https://doi.org/10.3390/fishes9100394 - 30 Sep 2024
Viewed by 771
Abstract
The vasa gene, encoding an ATP-dependent RNA helicase, and the nanos-2 gene, an RNA-binding protein, are essential for germ cell origination, migration, maintenance, and development in vertebrates and invertebrates. The expression levels of the vasa and nanos-2 genes have not yet been investigated [...] Read more.
The vasa gene, encoding an ATP-dependent RNA helicase, and the nanos-2 gene, an RNA-binding protein, are essential for germ cell origination, migration, maintenance, and development in vertebrates and invertebrates. The expression levels of the vasa and nanos-2 genes have not yet been investigated or reported in crappie species. These two genes were partially sequenced and characterized, and their expression patterns were analyzed using reverse-transcription quantitative polymerase chain reaction (RT-qPCR) according to age and sex. The vasa sequences of white crappie (WC) females and males showed significant similarity with the vasa homologs of largemouth bass (Micropterus salmoides; 93.1–93.98%) and smallmouth bass (M. dolomieu; 91.95–92.77%), indicating its conserved nature within the Family Centrarchidae. The vasa sequence of black crappie (BC) females showed significant similarity with the vasa homologs of white crappie (91.67%), largemouth bass (96.10%), smallmouth bass (96.10%), spotted scat (Scatophagus argus; 97.37%), mandarin fish (Siniperca chutasi; 96.15%), Japanese sea bass (Lateolabrax japonicus; 94.87%), lumpfish (Cyclopterus lumpus; 91.95%), southern bluefin tuna (Thunnus maccoyii; 94.74%), large yellow croaker (Larimichthys crocea; 92.21%), and Nile tilapia (Oreochromis niloticus; 92.21%). The nanos-2 sequences of WC females, WC males, and BC females showed significant similarity with the nanos-2 of largemouth bass (92.92–96.36%), smallmouth bass (92.92–96.36%), and mandarin fish (92.66–94.34%). The expression of vasa in BC females was significantly higher at age-2 than at age-1, while WC males and females presented no significant age-related differences. Neither species had a significant difference in nanos-2 gene expression with age. The expression levels of vasa and nanos-2 were significantly higher in WC males than females. Full article
(This article belongs to the Section Genetics and Biotechnology)
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Figure 1

Figure 1
<p>Multiple DNA sequence alignment of (<b>A</b>) <span class="html-italic">vasa</span> gene and (<b>B</b>) <span class="html-italic">nanos-2</span> gene by comparing available DNA sequences from a database of different fish species using Clustal Omega program. The red box indicates the highly conserved portion of the sequences. Asterisks (*) indicate sequence conservation among all input sequences.</p>
Full article ">Figure 1 Cont.
<p>Multiple DNA sequence alignment of (<b>A</b>) <span class="html-italic">vasa</span> gene and (<b>B</b>) <span class="html-italic">nanos-2</span> gene by comparing available DNA sequences from a database of different fish species using Clustal Omega program. The red box indicates the highly conserved portion of the sequences. Asterisks (*) indicate sequence conservation among all input sequences.</p>
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<p>Multiple DNA sequence alignment of (<b>A</b>) <span class="html-italic">vasa</span> and (<b>B</b>) <span class="html-italic">nanos-2</span> gene sequences from white crappie (<span class="html-italic">Pomoxis annularis</span>) and black crappie (<span class="html-italic">P. nigromaculatus</span>) using Clustal Omega program. Asterisks (*) indicate sequence conservation between two species.</p>
Full article ">Figure 2 Cont.
<p>Multiple DNA sequence alignment of (<b>A</b>) <span class="html-italic">vasa</span> and (<b>B</b>) <span class="html-italic">nanos-2</span> gene sequences from white crappie (<span class="html-italic">Pomoxis annularis</span>) and black crappie (<span class="html-italic">P. nigromaculatus</span>) using Clustal Omega program. Asterisks (*) indicate sequence conservation between two species.</p>
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<p>RT-qPCR analysis of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> gene expression in age-1 vs. age-2: (<b>A</b>) female white crappie, (<b>B</b>) male white crappie, and (<b>C</b>) female black crappie. <span class="html-italic">GAPDH</span> was used as the control. The expression levels of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> for the age-1 group were set to 1. Each bar represents the mean ± standard error (SE) from three individuals. Asterisk (*) indicates significant differences (<span class="html-italic">p</span> ≤ 0.05) between age-1 and age-2 female BC, determined via <span class="html-italic">t</span>-test.</p>
Full article ">Figure 3 Cont.
<p>RT-qPCR analysis of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> gene expression in age-1 vs. age-2: (<b>A</b>) female white crappie, (<b>B</b>) male white crappie, and (<b>C</b>) female black crappie. <span class="html-italic">GAPDH</span> was used as the control. The expression levels of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> for the age-1 group were set to 1. Each bar represents the mean ± standard error (SE) from three individuals. Asterisk (*) indicates significant differences (<span class="html-italic">p</span> ≤ 0.05) between age-1 and age-2 female BC, determined via <span class="html-italic">t</span>-test.</p>
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<p>RT-qPCR analysis of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> gene expression levels in female vs. male white crappie. <span class="html-italic">GAPDH</span> was used as the control. The expression levels of <span class="html-italic">vasa</span> and <span class="html-italic">nanos-2</span> for females were set to 1. Each bar represents the mean ± standard error (SE) from three individuals. Asterisk (**) indicates significant differences (<span class="html-italic">p</span> ≤ 0.01) between age-2 females vs. age-2 males, determined via <span class="html-italic">t</span>-test.</p>
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21 pages, 4548 KiB  
Article
Exposure of Cattle Breeding Herds to Naturally Co-Contaminated Zearalenone and Deoxynivalenol: The Relevance of a Urinary Mycotoxin Monitoring System for Herd Health and Food Safety
by Oky Setyo Widodo, Seiichi Uno, Emiko Kokushi, Osamu Yamato, M. Fariz Fadillah Mardianto, Urara Shinya, Yuto Kano, Chiho Kawashima, Yasuo Fushimi, Tetsushi Ono, Masayasu Taniguchi and Mitsuhiro Takagi
Toxins 2024, 16(9), 402; https://doi.org/10.3390/toxins16090402 - 18 Sep 2024
Viewed by 1076
Abstract
The widespread presence of Fusarium mycotoxins in animal feed is a global issue, not only for the health of livestock but also for ensure the safety of food as an end product. High concentrations of zearalenone (ZEN) and deoxynivalenol (DON) have been detected [...] Read more.
The widespread presence of Fusarium mycotoxins in animal feed is a global issue, not only for the health of livestock but also for ensure the safety of food as an end product. High concentrations of zearalenone (ZEN) and deoxynivalenol (DON) have been detected in the diets of Japanese Black (JB) and Holstein Friesian (HF) breeding herds. Consequently, we monitored serum biochemical parameters over a long time in both herds, focusing on anti-Müllerian hormone (AMH) levels and acute-phase inflammation. Additionally, urinary 8-hydroxy-2′-deoxyguanosine (8-OHdG) and progesterone levels were measured in the HF herd. The JB herd, a ZEN-dominant model with low DON contamination, demonstrated ZEN levels that exceeded the Japanese limit in the purchased total mixed rations (TMR). Conversely, the HF herd, which primary consumes DON-dominant feed with low ZEN contamination, had high DON levels in the dent corn silage. Specifically, the JB herd’s TMR contained 1.79 mg/kg ZEN and 0.58 mg/kg DON, whereas the HF herd’s silage had 15.3 mg/kg DON (dried sample) and 0.1 mg/kg ZEN. Enzyme-linked immunoassay were used to measure urinary ZEN-DON levels following confirmation through liquid chromatography-tandem mass spectrometry. Urinary ZEN-DON levels measured were significantly correlated (p < 0.05, r > 0.6) in both herds. In the HF herd, AMH levels increased (p = 0.01) and serum amyloid A (SAA) levels decreased (p = 0.02) when contaminated and at the end of the monitoring period. Additionally, urinary ZEN and DON levels were significantly correlated with SAA levels (ZEN: p = 0.00, r = 0.46; DON: p = 0.03, r = 0.33), with an increase in ZEN and DON levels resulting in higher SAA levels. The JB herd showed no significant differences. Additionally, in the HF herd, 8-OHdG/Cre levels increased significantly during major contamination periods (p < 0.05). Clinical data from the HF herd indicated an increase in mastitis cases and treatment rates during periods of major contamination. Abortion rates in the HF herd decreased from 22.9% (before monitoring) to 8.9% (during the high contamination period) and finally to 1% (at the end of the monitoring period), with corresponding increases in progesterone levels. ZEN-DON contamination adversely affects breeding cattle’s productivity, reproductive performance, and health. Therefore, monitoring urinary ZEN-DON is valuable for detecting contaminants and ensuring the safety of food products. Full article
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Figure 1
<p>Urinary co-contamination levels in the JB and HF breeding herds, measured by an ELISA and LC-MS/MS. Cre: creatinine; ND: not detected; Total ZEN = ZEN/Cre + α-ZEL/Cre + β-ZEL/Cre; Total DON = DON/Cre + Ac-DON/Cre.</p>
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<p>(<b>a</b>) AMH levels (trend lines, mean, and SEM) in both JB and HF breeding herds; (<b>b</b>) SAA levels (trend lines, mean, and SEM) in both JB and HF breeding herds; (<b>c</b>) Changes in both urinary ZEN and SAA levels in the HF breeding herd; (<b>d</b>) Changes in both urinary DON and SAA levels in the HF breeding herd.</p>
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<p>The patterns of blood biochemical analyses (mean ± SEM) of the examined cattle. GOT: glutamate-oxaloacetate transaminase; GGT: gamma-glutamyl transpeptidase; FFA: free fatty acids; T-Cho: total cholesterol; BUN: blood urea nitrogen; GLU: glucose; Ca: calcium; IP: inorganic phosphorus; Mg: magnesium; TG: triglycerides; Vit.A: vitamin A; Vit.E: vitamin E; 3HB: 3-hydroxybutyrate; TP: total protein; Alb: albumin; AG: albumin/globulin ratio.</p>
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<p>(<b>a</b>) The mean value of urinary 8-OHdG/Cre levels in the HF breeding herd (3 times dilution); (<b>b</b>) The mean value of urinary 8-OHdG/Cre levels in a non-contaminated breeding herd (20 times dilution); (<b>c</b>) Progesterone levels in the HF breeding herd at each sampling period; *: significant differences (<span class="html-italic">p</span> &lt; 0.05). Different color dots represent the urinary 8-OHdG/Cre levels in different cows.</p>
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<p>The clinical information of the JB and HF breeding herds. (<b>a</b>) The cow conception rate (CCR), feeding modification, and the date of artificial insemination (AI) in the JB breeding herd; (<b>b</b>) the CCR and abortion rate in the HF breeding herd; (<b>c</b>) the SCC, mastitis cases, and treatment rates in the HF breeding herd; N/A: the data record was not available. MA: mycotoxin adsorbent; ↓↓: the urine indicates a high level of ZEN and DON; ↓: the urine indicates a high level of DON.</p>
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<p>Flow chart of the urinary ZEN-DON monitoring system by ELISA for initial detection and LC-MS/MS for confirmation; DW: distilled water.</p>
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<p>An illustration of the experimental design. The design includes monthly changes of highest and lowest temperatures in degrees Celsius (°C) for the JB and HF breeding herds, as well as comprehensive information on sampling time and the biomarkers analyzed in feed, blood, and urine samples. A harmful mark indicates the first time mycotoxin contamination was detected in feed on both herds (July 2022); TMR: total mixed ratio; WCS: whole crop silage; Italian r.: Italian ryegrass; Mix*: mixture of TMR, WCS, and Italian ryegrass; ZEN: zearalenone; α-ZEL: α-zearalenol; β-ZEL: β-zearalenol; DON: deoxynivalenol; 3-Ac-DON: 3-acetyldeoxynivalenol; AMH: anti-Müllerian hormone; SAA: serum amyloid A; 8-OHdG: 8-hydroxy-2′-deoxyguanosine.</p>
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8 pages, 4508 KiB  
Communication
Genetic Characterization of the Co-Invasive Rodent Parasite Heterakis spumosa (Nematoda, Heterakidae)
by Srisupaph Poonlaphdecha, Alexis Ribas, Kittipong Chaisiri, Serge Morand, Abigail Hui En Chan and Urusa Thaenkham
Animals 2024, 14(18), 2674; https://doi.org/10.3390/ani14182674 - 14 Sep 2024
Viewed by 1200
Abstract
Heterakis spumosa, a parasitic worm infecting rodents, is globally prevalent in black rats, brown rats, and house mice. It is hypothesized to originate from Asia due to its widespread presence in Southeast Asia in various Murinae. Previous molecular studies focused on European, [...] Read more.
Heterakis spumosa, a parasitic worm infecting rodents, is globally prevalent in black rats, brown rats, and house mice. It is hypothesized to originate from Asia due to its widespread presence in Southeast Asia in various Murinae. Previous molecular studies focused on European, African, and Japanese specimens, but none included samples from the putative native range. Rodents were collected between 2008 and 2015 across various localities in Southeast Asia and Europe, identified by morphology or genetic barcoding. Viscera were examined or preserved for later inspection. DNA was extracted from H. spumosa. PCR amplification targeting the mtCOI gene and ITS1 region was conducted in this study using newly designed primers (based on Heterakis reference sequences). PCR amplicons were subsequently sequenced and analyzed. In this study, the phylogenetic analysis using ITS1 sequences revealed that Heterakis samples from Thai and Laotian rodents belong to the species H. spumosa, exhibiting low genetic variation compared to samples from other regions. Genetic distance calculations using mtCOI sequences confirmed the marked distinction of H. spumosa from other Heterakis species. Our phylogenetic analyses using partial mtCOI and ITS1 sequences have significantly enhanced our comprehension of the genetic diversity and evolutionary history of the nematode H. spumosa. Full article
(This article belongs to the Section Wildlife)
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Graphical abstract

Graphical abstract
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<p>Maximum likelihood (Kimura 2 parameter model) phylogeny using the nuclear ITS1 region as the genetic marker. The numbers at the nodes indicate bootstrap support obtained through 1000 replications (ML/NJ). Only bootstrap values &gt;50 are shown. Reference NCBI sequences are shown with their accession numbers. The representative sequences for <span class="html-italic">H. spumosa</span> and <span class="html-italic">H. gallinarum</span> are highlighted in ‘red’ and ‘blue’, respectively, with the host, location, and host ID given in parentheses.</p>
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<p>Maximum likelihood (Tamura Nei + Gamma distribution parameter model) phylogeny using the mtCOI gene as the genetic marker. The numbers at the nodes indicate bootstrap support obtained through 1000 replications (ML/NJ). Only bootstrap values &gt;50 are shown. Reference NCBI sequences are shown with their accession numbers. The representative sequences for <span class="html-italic">H. spumosa</span> and <span class="html-italic">H. gallinarum</span> are highlighted in ‘red’ and ‘blue’, respectively, with the host, location, and host ID given in parentheses. The clade divisions of <span class="html-italic">H. spumosa</span> are labeled accordingly.</p>
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27 pages, 3540 KiB  
Article
Maternal Undernutrition Affects Fetal Thymus DNA Methylation, Gene Expression, and, Thereby, Metabolism and Immunopoiesis in Wagyu (Japanese Black) Cattle
by Ouanh Phomvisith, Susumu Muroya, Konosuke Otomaru, Kazunaga Oshima, Ichiro Oshima, Daichi Nishino, Taketo Haginouchi and Takafumi Gotoh
Int. J. Mol. Sci. 2024, 25(17), 9242; https://doi.org/10.3390/ijms25179242 - 26 Aug 2024
Viewed by 1424
Abstract
We aimed to determine the effects of maternal nutrient restriction (MNR) on the DNA methylation and gene expression patterns associated with metabolism and immunopoiesis in the thymuses of fetal Wagyu cattle. Pregnant cows were allocated to two groups: a low-nutrition (LN; 60% nutritional [...] Read more.
We aimed to determine the effects of maternal nutrient restriction (MNR) on the DNA methylation and gene expression patterns associated with metabolism and immunopoiesis in the thymuses of fetal Wagyu cattle. Pregnant cows were allocated to two groups: a low-nutrition (LN; 60% nutritional requirement; n = 5) and a high-nutrition (HN; 120% nutritional requirement, n = 6) group, until 8.5 months of gestation. Whole-genome bisulfite sequencing (WGBS) and RNA sequencing were used to analyze DNA methylation and gene expression, while capillary electrophoresis–Fourier transform mass spectrometry assessed the metabolome. WGBS identified 4566 hypomethylated and 4303 hypermethylated genes in the LN group, with the intergenic regions most frequently being methylated. Pathway analysis linked hypoDMGs to Ras signaling, while hyperDMGs were associated with Hippo signaling. RNA sequencing found 94 differentially expressed genes (66 upregulated, 28 downregulated) in the LN group. The upregulated genes were tied to metabolic pathways and oxidative phosphorylation; the downregulated genes were linked to natural killer cell cytotoxicity. Key overlapping genes (GRIA1, CACNA1D, SCL25A4) were involved in cAMP signaling. The metabolomic analysis indicated an altered amino acid metabolism in the MNR fetuses. These findings suggest that MNR affects DNA methylation, gene expression, and the amino acid metabolism, impacting immune system regulation during fetal thymus development in Wagyu cattle. Full article
(This article belongs to the Section Molecular Immunology)
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Figure 1
<p>Heatmap showing the hierarchical clustering of differential methylation in the genomic regions for LN (salmon pink) and HN (green blue) fetal thymuses, comparing DNA methylation levels between LN and HN (<span class="html-italic">q</span> &lt; 0.01). There were 4566 hypoDMGs and 4303 hyperDMGs in the LN group and the HN group. The row represents the gene, and the column denotes the sample. Red: hypermethylated genes; green: hypomethylated genes. The darkness of each color corresponds to the magnitude of the difference vs. the mean value.</p>
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<p>Chromosomal distribution of DMRs in the LN and HN thymuses. ChrUn, unplaced chromosome. Hypermethylation and hypomethylation DMGs in LN fetal thymuses are indicated in blue and red, respectively.</p>
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<p>Scatter plot of KEGG pathway enrichment, depicting the top 20 significant pathways associated with DMRs. (<b>A</b>) Genes associated with all hypoDMRs. (<b>B</b>) Genes associated with all hyperDMRs. The <span class="html-italic">y</span>-axis represents the pathway terms, and the <span class="html-italic">x</span>-axis represents fold enrichment (the proportion of differentially methylated genes (DMGs) vs. all genes annotated with a specific pathway term). The size of the dots indicates the number of genes, and the color reflects the −log10(<span class="html-italic">q</span>-value).</p>
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<p>Results of the RNA sequencing analysis of the low-nutrition (LN) and high-nutrition (HN) groups. Heatmap of the hierarchical clustering of the 94 DEGs for LN (salmon pink) and HN (green blue) fetal thymuses (<span class="html-italic">q</span> &lt; 0.05). The row represents the gene, and the column represents the sample. Red: upregulated genes; green: downregulated genes. The darkness of each color corresponds to the magnitude of the difference from the mean value.</p>
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<p>Chromosomal distribution of DEGs in the thymuses of LN and HN fetuses. ChrUn, unplaced chromosome.</p>
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<p>Sankey plot, illustrating the connections of overlapping genes identified using RNA-seq and DNA methylation analysis with the leading KEGG pathways. (<b>A</b>) denotes overlapping genes, obtained using DNA methylation and RNA-seq, that are linked to the KEGG pathways in (<b>B</b>). (<b>C</b>) The <span class="html-italic">y</span>-axis shows the names of genes and pathway terms, and the <span class="html-italic">x</span>-axis shows the ratio of the number of genes associated with terms to the number of genes in the pathway background. The dot size indicates the number of genes, and the color reflects the −log10(<span class="html-italic">q</span>-value). (<b>D</b>) ID and matched names for the KEGG pathway terms.</p>
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<p>Results of the functional enrichment analysis on the protein–protein interaction (PPI) networks for six target genes. The node colors represent the enrichment of PPI pathways, with each color corresponding to a specific pathway. Significant enriched pathways (<span class="html-italic">q</span> &lt; 0.05) are highlighted. BPs: biologic processes; CC: cellular component.</p>
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<p>Heatmap of the hierarchical clustering of the top 50 metabolites present at differing concentrations in LN (salmon pink) and HN (green blue) fetal thymuses. The rows represent the metabolites, and the columns represent the samples. The metabolites present at relatively low concentrations are displayed in green, and those present at relatively high concentrations are displayed in red. The darkness of each color corresponds to the magnitude of the difference vs. the mean value. UDP-glc/UDP-gal, UDP-glucose/UDP-galactose; UDP-GlcNAc, UDP-N-acetylglucosamine; dCMP, deoxycytidine monophosphate; 1H-IPA, 1H-imidazole-4-propionic acid; dHM, 3-(3,4-dihydroxyphenyl)-2-methylalanine; GlcNAc-P, N-acetylglucosamine 1-phosphate; MIA, 1-methyl-4-imidazoleacetic acid; Ru5P, ribulose 5-phosphate; EAP, ethanolamine phosphate; and Ala-Ala, alanine–alanine.</p>
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<p>Theoretical framework comprising the pathways associated with the DMGs and DEGs associated with molecular function networks and metabolism in the thymuses of LN fetuses. (<b>1</b>) cAMP, Ras, cGMP–PGK, insulin, cortisol, and GABAergic synapse pathways, which are associated with hypoDMG, and Wnt and sphingolipid signaling pathways, which are associated with hyperDMG. (<b>2</b>) Pathways associated with upregulated genes, encompassing metabolic pathways, oxidative phosphorylation (OXPHOS), glutathione (GSH) metabolism, and reactive oxygen species (ROS). (<b>3</b>) Reprogramming of the mitochondrial metabolism via OXPHOS may be facilitated by MRPS2 and SLC25A4, with the oxidation of amino acids (His, histidine; Ser, serine; Ala, alanine; Phe, phenylalanine; and Thr, threonine) in the Krebs cycle generating ATP to support immune regulation. (<b>4</b>) cAMP-response element-binding protein 1 (CREB1) regulates energy production via mitochondrial OXPHOS and cAMP-response elements (CREs), thereby promoting immune cell development and, in particular, the generation of activated CD4 cells. Prolonged CD4 expression is associated with the suppression of immune pathways, including Fc gamma R-mediated phagocytosis, C-type lectin receptor signaling, and natural killer cell-mediated cytotoxicity. Up and down arrows indicate upregulation/hypomethylation and downregulation/hypermethylation, respectively, and the red arrows represent promoter hypermethylation. Pathways with a black background did not differ between the two groups.</p>
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23 pages, 9712 KiB  
Article
The Student Empowerment through Narrative, Storytelling, Engagement, and Identity Framework for Student and Community Empowerment: A Culturally Affirming Pedagogy
by Kirin Macapugay and Benjamin Nakamura
Genealogy 2024, 8(3), 94; https://doi.org/10.3390/genealogy8030094 - 23 Jul 2024
Viewed by 2098
Abstract
For people from communities experiencing poverty and oppression, education, particularly higher education, is a means to ensure upward socioeconomic mobility. The access to and attainment of education are issues of social and economic justice, built upon foundational experiences in primary and secondary settings, [...] Read more.
For people from communities experiencing poverty and oppression, education, particularly higher education, is a means to ensure upward socioeconomic mobility. The access to and attainment of education are issues of social and economic justice, built upon foundational experiences in primary and secondary settings, and impacted by students’ cultural and socio-political environments. 6. The 2020 murder of George Floyd, the Black Lives Matter movement, ongoing discourse around immigration, and COVID-19-related hate targeting people of Asian American descent prompted national calls to dismantle social and systemic racism, spurring diversity, equity, inclusion, and accessibility (DEIA) initiatives, particularly in education. However, these efforts have faced opposition from teachers who have told students that all lives matter, and racism does not exist in many American classrooms Loza. These comments negate students’ experiences, suppress cultural and identity affirmation, and negatively impact student wellness and academic performance. Forged in this polarized environment, two longtime community organizers and educators, an indigenous person living away from her ancestral lands and a multiracial descendant of Japanese Americans interned during WWII, whose identities, experiences, and personal narratives shape the course of their work in and outside of the physical classroom, call on fellow educators to exercise y (2018) component of the archeology of self, a “profound love, a deep, ethical commitment to caring for the communities where one works”, by adopting a framework to encourage this profound love in students, acting not just as a teacher, but as a sensei. The word sensei is commonly understood in reference to a teacher of Japanese martial arts. The honorific sensei, however, in kanji means one who comes before, implying intergenerational connection. Sensei is an umbrella expression used for elders who have attained a level of mastery within their respective crafts—doctors, teachers, politicians, and spiritual leaders may all earn the title of sensei. The sensei preserves funds of knowledge across generations, passing down and building upon knowledge from those who came before. The Student Empowerment through Narrative, Storytelling, Engagement, and Identity (SENSEI) framework provides an asset-based, culturally affirming approach to working with students in and beyond the classroom. The framework builds on tools and perspectives, including Asset-based Community Development (ABCD), the Narrative Theory, Yosso’s cultural community wealth, cultural continuity, thrivance, community organizing tenets, and storytelling SENSEI provides a pedagogy that encourages students to explore, define, and own their identities and experiences and grow funds of knowledge, empowering them to transform their own communities from within. The SENSEI framework begins by redefining a teacher as not simply one who teaches in a classroom but rather one who teaches valuable life lessons that transcend colonial conceptualizations of the teacher. In colonized contexts, teachers function to maintain hegemony and assert dominance over marginalized populations. In the SENSEI framework, teachers are those who disrupt colonial patterns and function to reclaim the strengths and voices of the communities they serve. In the SENSEI framework, students are not relegated to those enrolled in classrooms. As with a sensei, a student exists to counter hegemony by embracing and enacting their cultural wealth Educators must help counter harmful narratives and encourage students to identify the strengths that lie within themselves and their communities. Collective forms of narrative that value identity can ensure the continuity of a community or a people. The stories of students’ histories, traditional practices, and resilience can help disrupt harms, many that have lasted for generations, so they may not just survive, but thrive. Full article
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<p>The four interrelated components of the SENSEI framework.</p>
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<p>A photograph of the larger school campus that would eventually combine previous gang sites in one location. After the campus was established, the empty space next to the grass slope became an outdoor student-led garden as part of a horticulture elective course. In the back of the campus where the empty wall is faintly depicted is where the student mural would be established. The photograph is from the authors’ personal collection.</p>
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<p>Students begin collectively painting a mural on the school campus. Here, a campus mentor is dialoguing with students to increase the empathy lenses of others whose lived experiences differ from their own. The photograph is from the authors’ personal collection.</p>
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<p>Dignitaries receiving recognition at the ribbon-cutting ceremony. This formal storytelling moment captured the counternarratives and engrained them into the collective knowledge of the region. The photographs is from the authors’ personal collection.</p>
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<p>Local print and televised news media capturing stories from the principal, students, and families. The photograph is from the authors’ personal collection.</p>
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<p>Local print and televised news media capturing stories from the principal, students, and families. The photographs is from the authors’ personal collection.</p>
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<p>School staff serving food to families at potluck lunch during the ribbon-cutting ceremony. The photograph is from the authors’ personal collection.</p>
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<p>A student giving a speech during the ribbon-cutting ceremony describing the systemic barriers he faced as a student in the K-12 system of schooling, the challenges he overcame, and ways in which this school campus offered an empowering and different experience. The photograph is from the authors’ personal collection.</p>
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<p>One co-author and one of the community college social work classes who produced advocacy letters in 2020. The photograph is from the authors’ personal collection.</p>
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<p>Elder residents of a lower-income rental community speaking at their City Hall, organized with several volunteer community organizers, including a co-author, in 2017. The photograph is from the authors’ personal collection.</p>
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<p>Participants from the San Diego City College’s PEER, students who experienced housing insecurity themselves and now work in organizations addressing homelessness (2022), sharing their experiences during a conference on homelessness prevention. The photograph is from the authors’ personal collection.</p>
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<p>A PEER graduate and participants sharing stories and narratives during a housing conference in Southern California in 2023. The photograph is from the authors’ personal collection.</p>
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<p>Asian American Pacific Islander Mental Health forum, co-organized by co-author, San Diego Mira Mesa Public Library, 2023. Photograph from authors’ personal collection.</p>
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<p>Asian American Pacific Islander Mental Health forum, co-organized by co-author, San Diego Skyline Public Library, 2022. Photograph from authors’ personal collection.</p>
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<p>A co-author’s community college social work class presenting an asset map of the neighborhood they live in, assessing where opportunities may lay to strengthen services and access in their community (2023). The photograph is from the authors’ personal collection.</p>
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<p>Attendees sharing in pairs and trios at a 2024 Asian Pacific Americans in Higher Education (APAHE) workshop facilitated by the authors. The room was packed, with many students sitting on the floor when physical seats were not available. The photograph is from the authors’ personal collection.</p>
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<p>Attendees sharing in large group at a 2023 Asian Pacific Americans in Higher Education (APAHE) workshop facilitated by the authors. The photograph is from the authors’ personal collection.</p>
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<p>Attendees sharing collective ideas for culturally affirming institutions at a 2023 Asian Pacific Americans in Higher Education (APAHE) workshop facilitated by the authors. The photograph is from the authors’ personal collection.</p>
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12 pages, 579 KiB  
Article
The Effect of the Addition of Selected Juices on the Content of Aluminum in Tea Infusions and Health Risk Assessment in the Polish Population
by Artur Mazurek and Marzena Włodarczyk-Stasiak
Appl. Sci. 2024, 14(12), 5173; https://doi.org/10.3390/app14125173 - 14 Jun 2024
Viewed by 669
Abstract
Tea is a plant rich in compounds that positively impact human health. Still, it also contains large amounts of aluminum, which is toxic to humans and passes into the infusion during brewing. The presented research aims to determine the effect of adding lemon, [...] Read more.
Tea is a plant rich in compounds that positively impact human health. Still, it also contains large amounts of aluminum, which is toxic to humans and passes into the infusion during brewing. The presented research aims to determine the effect of adding lemon, Japanese quince, and quince juice to infusions of various types of teas on their aluminum content. It should be emphasized that research on the impact of Japanese quince and quince juices has not yet been published. Exposure to exceeding the safe level of aluminum consumption from tea infusions was also assessed. It has been shown that adding juices that lower the pH of infusions increases the aluminum content by up to 150%. The main factor influencing the increase in the aluminum content in tea infusions with additives is the lowering of the pH value, and other ingredients present in the juices do not have a significant impact. The health risk assessment indicates the possibility of adverse health effects from aluminum consumption, especially from black and green tea infusions with the addition of Japanese quince and lemon juices. It has been shown that quince juice can be recommended as an addition to tea infusions because it causes the smallest increase in aluminum content in the infusion among the juices tested. Full article
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<p>Mean and SD pH value and aluminum concentration (mg/L) in black leaf tea infusions depending on the volume of lemon juice added during brewing. Different letters (a, b, c, etc.) show a significant difference with <span class="html-italic">p</span> &lt; 0.05.</p>
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15 pages, 2571 KiB  
Article
A New Species of Biscogniauxia Associated with Pine Needle Blight on Pinus thunbergii in China
by Changxia Qiao, Ruiwen Zhao, Dewei Li and Xiaolei Ding
Forests 2024, 15(6), 956; https://doi.org/10.3390/f15060956 - 30 May 2024
Viewed by 948
Abstract
In June 2020, needle blight symptoms on Pinus thunbergii were discovered in Bazhong City, Sichuan Province, China. Fungal isolates were obtained from the pine needles of P. thunbergii. After examining morphological characteristics and conducting multi-locus (ITS, ACT, TUB2 and RPB2) [...] Read more.
In June 2020, needle blight symptoms on Pinus thunbergii were discovered in Bazhong City, Sichuan Province, China. Fungal isolates were obtained from the pine needles of P. thunbergii. After examining morphological characteristics and conducting multi-locus (ITS, ACT, TUB2 and RPB2) phylogenetic analyses, the isolates SC1–SC5 were determined to be a new species, Biscogniauxia sinensis. Genealogical Concordance Phylogenetic Species Recognition with a pairwise homoplasy index test was used to further verify the results of the phylogenetic analyses. The morphology and phylogenetic relationships between this new species and other related Biscogniauxia species were discussed. To our knowledge, this is also the first report of Biscogniauxia sinensis associated with pine needle blight on P. thunbergii in China. The needle damage of P. thunbergii associated with Biscogniauxia sinensis will detrimentally affect the carbon absorption and photosynthetic efficiency of P. thunbergii, further reduce the absorption of nutrients by Japanese black pine and may lead to the imbalance of pine forest conditions, which will have a negative impact on the forest ecological system. Full article
(This article belongs to the Section Forest Health)
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<p>Phylogenetic relationship of SC1, SC2, SC3, SC4 and SC5 with related taxa in <span class="html-italic">Biscogniauxia</span> derived from ITS. The tree is rooted with <span class="html-italic">Annulohypoxylon cohaerens</span> (YMJ 310). The values on the branches are Bayesian posterior probability (BI-PP) ≥ 0.90 and the ML bootstrap value (BS) ≥ 70, respectively. Isolates in this study are highlighted in red and holotype isolates are in bold.</p>
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<p>Phylogenetic relationship of five isolates (SC1, SC2, SC3, SC4 and SC5) with related taxa in Biscogniauxia derived from completed squences of ITS, <span class="html-italic">ACT</span>, <span class="html-italic">TUB</span> and <span class="html-italic">RPB2</span>. The tree is rooted with <span class="html-italic">Annulohypoxylon cohaerens</span> (YMJ 310) and <span class="html-italic">Hypoxylon rubiginosum</span> (YMJ 24). The values on the branches are Bayesian posterior probability (BI-PP) ≥ 0.90 and the ML bootstrap value (BS) ≥ 70, respectively. Isolates in this study are highlighted in red and holotype isolates are in bold.</p>
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<p>Pairwise homoplasy index test among <span class="html-italic">Biscogniauxia sinensis</span> and their closely related taxa.</p>
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<p>Morphological characteristics of <span class="html-italic">Biscogniauxia sinensis</span> from <span class="html-italic">Pinus thunbergii. (</span><b>A</b>) Diseased needles in the field. (<b>B</b>) Conidiomata on needles. (<b>C</b>–<b>E</b>) Conidiophores, conidiogenous cells and conidia. (<b>F</b>) Conidia. (<b>G</b>) Cultures on PDA from above (right) and reverse (left). (<b>H</b>) Cultures on OA from above (left) and reverse (right). Scale bars: (<b>B</b>) = 500 µm; (<b>C</b>–<b>G</b>) = 10 µm.</p>
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14 pages, 3660 KiB  
Article
Investigating the Effectiveness of Novel Repellent Labels Produced from Invasive Plant Species
by Klemen Možina, Zala Mavrič and Urška Vrabič-Brodnjak
Coatings 2024, 14(5), 642; https://doi.org/10.3390/coatings14050642 - 19 May 2024
Viewed by 1150
Abstract
Although N,N-diethyl-3-methylbenzamide (DEET) remains the most effective repellent against mosquitoes and ticks, concerns about skin irritation, rashes, and neurological problems in children have driven the search for natural alternatives. The aim of this research was to develop, manufacture, and test prototype stickers derived [...] Read more.
Although N,N-diethyl-3-methylbenzamide (DEET) remains the most effective repellent against mosquitoes and ticks, concerns about skin irritation, rashes, and neurological problems in children have driven the search for natural alternatives. The aim of this research was to develop, manufacture, and test prototype stickers derived from invasive plant species in Europe. These labels contained a coating with encapsulated repellents made from essential oils to protect against mosquito bites and similar blood-sucking insects. Six samples of invasive plant species in Europe such as Japanese knotweed (Fallopia japonica), goldenrod (Solidago gigantea), and black locust (Robinia pseudoacacia) were coated with two essential oil mixtures (of geranium, lavender, and eucalyptus) and were encapsulated on solid carriers for prolonged evaporation. Analysis of the structural properties (weight, thickness, density, and specific volume) were carried out on the coated label samples. Analysis of surface properties (roughness and porosity), capillary absorption, and a comparison of time and evaporation of essential oils were also carried out. Scanning electron microscopy was performed on the samples and the solid carrier with different mixtures of essential oils. The Japanese knotweed sample, coated with a blend of geranium, lavender, and eucalyptus essential oils, showed the highest efficacy and stability. Full article
(This article belongs to the Special Issue Sustainable Coatings for Functional Textile and Packaging Materials)
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<p>The sample mass reduction according to analysis time.</p>
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<p>Time course of mass loss during the release of the repellent in 24 h.</p>
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<p>Capillary absorption capacity of labels according to Klemm method on coated samples.</p>
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<p>SEM micrographs of the surfaces of the investigated papers (<b>S1</b>–<b>S6</b>) at 100× and 1000× magnification.</p>
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<p>SEM micrographs of the surfaces of the investigated papers (<b>S1</b>–<b>S6</b>) at 100× and 1000× magnification.</p>
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<p>SEM micrographs of the surfaces of the investigated papers (<b>S1</b>–<b>S3</b>), with solid carrier contents of 10, 15, and 20%, at 1000× magnification.</p>
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<p>SEM micrographs of the surfaces of the SYLOID<sup>®</sup> XDP 3100 support, without EOs and with M1 and M1, at 1000× magnification.</p>
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18 pages, 5035 KiB  
Article
Depth of Interbreed Difference in Postmortem Bovine Muscle Determined by CE-FT/MS and LC-FT/MS Metabolomics
by Susumu Muroya, Yuta Horiuchi, Kazuki Iguchi, Takuma Higuchi, Shuji Sakamoto, Koichi Ojima and Kazutsugu Matsukawa
Metabolites 2024, 14(5), 261; https://doi.org/10.3390/metabo14050261 - 1 May 2024
Viewed by 1819
Abstract
Japanese Brown (JBR) cattle have moderately marbled beef compared to the highly marbled beef of Japanese Black (JBL) cattle; however, their skeletal muscle properties remain poorly characterized. To unveil interbreed metabolic differences over the previous results, we explored the metabolome network changes before [...] Read more.
Japanese Brown (JBR) cattle have moderately marbled beef compared to the highly marbled beef of Japanese Black (JBL) cattle; however, their skeletal muscle properties remain poorly characterized. To unveil interbreed metabolic differences over the previous results, we explored the metabolome network changes before and after postmortem 7-day aging in the trapezius muscle of the two cattle breeds by employing a deep and high-coverage metabolomics approach. Using both capillary electrophoresis (CE) and ultra-high-performance liquid chromatography (UHPLC)–Fourier transform mass spectrometry (FT/MS), we detected 522 and 384 annotated peaks, respectively, across all muscle samples. The CE-based results showed that the cattle were clearly separated by breed and postmortem age in multivariate analyses. The metabolism related to glutathione, glycolysis, vitamin K, taurine, and arachidonic acid was enriched with differentially abundant metabolites in aged muscles, in addition to amino acid (AA) metabolisms. The LC-based results showed that the levels of bile-acid-related metabolites, such as tauroursodeoxycholic acid (TUDCA), were high in fresh JBR muscle and that acylcarnitines were enriched in aged JBR muscle, compared to JBL muscle. Postmortem aging resulted in an increase in fatty acids and a decrease in acylcarnitine in the muscles of both cattle breeds. In addition, metabolite set enrichment analysis revealed that JBR muscle was distinctive in metabolisms related to pyruvate, glycerolipid, cardiolipin, and mitochondrial energy production, whereas the metabolisms related to phosphatidylethanolamine, nucleotide triphosphate, and AAs were characteristic of JBL. This suggests that the interbreed differences in postmortem trapezius muscle are associated with carnitine/acylcarnitine transport, β-oxidation, tricarboxylic acid cycle, and mitochondrial membrane stability, in addition to energy substrate and AA metabolisms. These interbreed differences may characterize beef quality traits such as the flavor intensity and oxidative stability. Full article
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<p>Hierarchical clustering analysis (<b>A</b>) and principal component analysis (PCA) (<b>B</b>) results using CE-FT/MS metabolomics profiles in the postmortem <span class="html-italic">trapezius</span> muscle of Japanese Brown (JBR; JBR1-3) and Japanese Black (JBL; JBL1-3) cattle. The muscle samples at a specific time point (day 0 and 7) were allocated to each breed. (<b>A</b>) In the heatmap, the row displays the metabolite, and the column represents the sample. Metabolites with relatively low and high levels are displayed in light blue and brown, respectively. The brightness of each color corresponds to the magnitude of the difference when compared to the average value. (<b>B</b>) In the PCA score plot, the muscle samples of day 0 (circle) and day 7 (triangle) are indicated for JBR (green) and JBL (red) cattle.</p>
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<p>PCA score plots of CE-FT/MS metabolomics data of the <span class="html-italic">trapezius</span> muscle of JBR (in green) and JBL (in red) cattle on day 0 (<b>A</b>) and day 7 (<b>B</b>).</p>
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<p>Volcano plot of CE-FT/MS metabolomics results of the <span class="html-italic">trapezius</span> muscle of JBR and JBL cattle on day 0 (<b>A</b>) and day 7 (<b>B</b>). The metabolites highly contributing to JBR and JBL (fold change &gt; 1.5, <span class="html-italic">p</span> &lt; 0.10) are indicated.</p>
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<p>MSEA results for the metabolomic difference between JBR and JBL on day 0 (<b>A</b>) and 7 (<b>B</b>) postmortem. Enrichment ratio is computed by (observed hits)/(expected hits). Different metabolisms between the days at <span class="html-italic">p</span> &lt; 0.05 are indicated in light red.</p>
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<p>PCA score plots of LC-FT/MS metabolomics data of the <span class="html-italic">trapezius</span> muscle of JBR (in green) and JBL (in red) cattle on day 0 (<b>A</b>) and day 7 (<b>B</b>).</p>
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<p>Volcano plot of LC-FT/MS metabolomics results of the <span class="html-italic">trapezius</span> muscle of JBR and JBL cattle on day 0 (<b>A</b>) and day 7 (<b>B</b>). The metabolites highly contributing to JBR and JBL (fold change &gt; 1.5, <span class="html-italic">p</span> &lt; 0.10) are indicated.</p>
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<p>Result of MSEA for metabolomic differences between days 0 and 7 postmortem in JBR (<b>A</b>) and JBL (<b>B</b>) cattle. Enrichment ratio is computed by (observed hits)/(expected hits). The different metabolisms between the two breeds are indicated in light red.</p>
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<p>PCA score plots of LC-FT/MS metabolomics data of the <span class="html-italic">trapezius</span> muscle on day 0 (in red) and day 7 (in green) in JBR (<b>A</b>) and JBL (<b>B</b>) cattle.</p>
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<p>Volcano plot of LC-FT/MS metabolomics results of the <span class="html-italic">trapezius</span> muscle of JBR (<b>A</b>) and JBL (<b>B</b>) cattle. The metabolites highly contributing to day 0 and day 7 (fold change &gt; 1.5, <span class="html-italic">p</span> &lt; 0.10) are indicated.</p>
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<p>Hypothetical scheme of interbreed differences in the postmortem metabolism of the <span class="html-italic">trapezius</span> muscle between JBR and JBL cattle. The metabolites that differed between the JBR and JBL muscles on day 0 and day 7 are indicated in blue and red, respectively. ↑ and ↓ indicate a high and low level in JBR muscle compared to JBL muscle, respectively. VL; long and very long-chain FAs (VLCFAs), Cart; carnitine.</p>
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15 pages, 252 KiB  
Article
“Educational Facials”: A Healing Tool for the Beautiful Struggle
by Kari Kokka and Michelle Cody
Educ. Sci. 2024, 14(3), 303; https://doi.org/10.3390/educsci14030303 - 13 Mar 2024
Cited by 1 | Viewed by 1922
Abstract
Critical educators of Color often work to support their students to work toward justice. However, because we live and work in a society imbued with white supremacy, cisheteropatriarchy, and additional systems of oppression, students and colleagues may resist efforts toward equity and racial [...] Read more.
Critical educators of Color often work to support their students to work toward justice. However, because we live and work in a society imbued with white supremacy, cisheteropatriarchy, and additional systems of oppression, students and colleagues may resist efforts toward equity and racial justice, especially in mathematics education with women of Color instructors. In this paper, two mathematics educators, a Japanese American woman and a Black woman, elaborate a theory of educational facials, first coined by the second author in 2015. The theory of educational facials is an analytic tool for healing from and navigating harmful school climates. The authors operationalize the theory of educational facials as a lens to investigate examples from their own experiences negotiating unhealthy environments. The article shares descriptions of types of educational facials (e.g., do-it-yourself empowerment educational facial) and concludes with discussion of systemic change to promote healthy, liberatory, justice-oriented school spaces. Full article
11 pages, 6862 KiB  
Communication
Ultrasonography and Postmortem Magnetic Resonance Imaging of Bilateral Ocular Disease in a Heifer
by Takeshi Tsuka, Yuji Sunden, Takehito Morita, Md Shafiqul Islam and Osamu Yamato
Ruminants 2024, 4(1), 125-135; https://doi.org/10.3390/ruminants4010008 - 8 Mar 2024
Viewed by 1348
Abstract
Bovine ocular diseases are typically characterized by the concurrent appearances of both macroscopic and intraocular abnormalities. This study examines the diagnostic efficacy of a combination of ultrasonography and magnetic resonance imaging (MRI) for the bilateral ocular disease observed in a 9-month-old Japanese Black [...] Read more.
Bovine ocular diseases are typically characterized by the concurrent appearances of both macroscopic and intraocular abnormalities. This study examines the diagnostic efficacy of a combination of ultrasonography and magnetic resonance imaging (MRI) for the bilateral ocular disease observed in a 9-month-old Japanese Black heifer. This case presented with bilateral strabismus and a white-colored lens structure in the right eye. A combination of ultrasonography and MRI revealed formations of corn-like and V-shaped membranous structures within the vitreous cavities of the left and right eyeballs, respectively. In the right eye, a cataract was suspected on both ultrasonogram and MRI. This case involved bilateral retinal detachments and strabismus similar to the signs of an autosomal recessive hereditary ocular disease; however, the cataract in the right eye differed from that hereditary disease. Finally, in genetic analysis, a known mutation of the WFDC1 gene was not detected. Ultrasonography is superior to MRI in demonstrating intraocular pathological changes. On the other hand, MRI is helpful for evaluating invasiveness of the ocular lesions to the peripheral structures. Thus, the combined use of these imaging modalities is recommended for diagnosing various bovine ocular diseases. Full article
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<p>Macroscopic appearances of the left eye (<b>a</b>) and right eye (<b>b</b>). (<b>a</b>) Severe strabismus is evident in the slightly protruded left eye. (<b>b</b>) Moderate strabismus is evident in the right eye with a whole, white-colored lens, indicating a cataract.</p>
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<p>Ultrasonographic appearances of the left eyeball (<b>a</b>,<b>b</b>) and right eyeball (<b>c</b>). (<b>a</b>) The lens is anechoic and surrounded by echogenic lines of the anterior and posterior lens capsules within the left eyeball. (<b>b</b>) The corn-like structure is heterogeneously echogenic and present between the posterior lens capsule and the deepest scleroretinal rim within the vitreous body of the left eyeball. (<b>c</b>) A V-shaped membranous structure is present and accompanied by two cystic structures within the vitreous body of the right eyeball. The enlarged lens is heterogeneously anechoic to hypoechoic and is lined by the thickened and irregular anterior and posterior lens capsules. Scale = 10 mm.</p>
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<p>Dorsal T1-weighted (<b>a</b>–<b>c</b>) and T2-weighted (<b>d</b>–<b>f</b>) views of the skull demonstrating the left and right eyeballs. (<b>a</b>) A V-shaped structure (empty and filled arrowheads) is seen within the vitreous body of the right eyeball. The tip of the V-shaped structure ends in the area of the optic nerve (arrow). (<b>b</b>) Two cystic structures are slightly evident in the center of one line of the V-shaped structure (empty arrowhead), despite no cystic structure being evident in another line (filled arrowhead) within the vitreous body of the right eyeball. A corn-like structure is not evident within the vitreous body of the left eyeball. (<b>c</b>) The right lens (filled arrow) is a spherical structure appearing entirely by a high signal intensity. The left lens (empty arrow) is normally visualized as a low signal intensity’s center surrounded by a high signal intensity’s line of the anterior and posterior lens structures. (<b>d</b>–<b>f</b>) Abnormal membranous structures are not evident within the vitreous bodies of the left and right eyeballs. The right lens is enlarged in the anteroposterior direction. Scale = 10 mm.</p>
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<p>Macroscopic view (<b>a</b>) and histopathology (<b>b</b>) of the lens within the right eyeball. (<b>a</b>) The lens is spherical, and diffusely clouded and white-colored. (<b>b</b>) In the cortex of the lens, mineralization (right upper area) and aggregated globular bodies (Morganian globules; inset) are scattered. The subcapsular region (left area) contains a mild proliferation of fibrous cells with an eosinophilic collagenous fibers deposition on the entire circumference of the lens structure (HE). Bar = 100 µm.</p>
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<p>Histopathology of the membranous substances within the left eyeball (<b>a</b>) and right eyeball (<b>b</b>). (<b>a</b>) Membranous structures within the left eyeball consist of the retina. The retina is detached from the pigment layer (left upper area). The optic disc is located in the left lower area. (<b>b</b>) Distorted membranous structures consist of the retina within the right eyeball. The retinae of both sides are atrophic; however, the layered construction is recognizable including a photoreceptor layer to the optic nerve layer as shown in the inset (HE). Bar = 500 µm.</p>
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<p>Forward (<b>a</b>) and reverse (<b>b</b>) sequences of the bovine <span class="html-italic">WFDC1</span> gene exon 2. Underlines show the wild-type nucleotide sequences at the position of g.10567100_10567101 in the bovine genome database (ARS-UCD1.2).</p>
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13 pages, 3121 KiB  
Article
Legibility of Sans-Serif Typeface on Different Paper Grades Made from Invasive Alien Plant Species
by Klementina Možina, Dorotea Kovačević and Klemen Možina
Appl. Sci. 2024, 14(3), 1281; https://doi.org/10.3390/app14031281 - 3 Feb 2024
Viewed by 977
Abstract
Invasive alien plant species (IAPS) may cause threats to native biodiversity in ecosystems. Researchers have been investigating all the possible ways that they can be used effectively for other purposes. Since IAPS are capable of forming cellulose fibre nets, in this research, papers [...] Read more.
Invasive alien plant species (IAPS) may cause threats to native biodiversity in ecosystems. Researchers have been investigating all the possible ways that they can be used effectively for other purposes. Since IAPS are capable of forming cellulose fibre nets, in this research, papers were made from three different types of IAPS (Japanese knotweed, giant goldenrod, and black locust). This research examined these IAPS papers and their effectiveness when used as printing substrates. In comparison to commercial office paper, the differences in basic, surface, optical, and microscopic properties were measured. As a widely used technology, inkjet printing was applied. We tested a commonly used sans-serif typeface (which has been established as being more legible than other typefaces in previous research) in three different type sizes (i.e., 8, 10, and 12 pt). According to the results, paper made from IAPS could offer some usable properties and acceptable legibility, especially when printing typefaces with specific attributes, such as moderate counter size, higher x-height, and minimal differences in the letter stroke width, are used. An appropriate typographic tonal density should be achieved in combination with an adequate letter size, e.g., 10 pt type size when a sans-serif typeface is used. Full article
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<p>Field intensities printed on commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4).</p>
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<p>Letter “a” characters at 50× magnification (Arial, 8 pt) and their binary pictures on commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4).</p>
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<p>Samples of 8 pt and 10 pt Arial typeface printed on commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4).</p>
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<p>Average reading time for texts in different type sizes (8 pt, 10 pt, and 12 pt) printed on commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4).</p>
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<p>Average reading time for texts printed on commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4).</p>
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<p>Correctness of participants’ answers across conditions, i.e., different papers (commercial office paper (S1), Japanese knotweed paper (S2), giant goldenrod paper (S3), and black locust paper (S4)) and different type sizes (8 pt, 10 pt, and 12 pt).</p>
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15 pages, 2534 KiB  
Article
New Implications of Metabolites and Free Fatty Acids in Quality Control of Crossbred Wagyu Beef during Wet Aging Cold Storage
by Shuji Ueda, Yuka Yoshida, Biniam Kebede, Chiaki Kitamura, Ryo Sasaki, Masakazu Shinohara, Itsuko Fukuda and Yasuhito Shirai
Metabolites 2024, 14(2), 95; https://doi.org/10.3390/metabo14020095 - 29 Jan 2024
Cited by 2 | Viewed by 2176
Abstract
Efficient cold-chain delivery is essential for maintaining a sustainable global food supply. This study used metabolomic analysis to examine meat quality changes during the “wet aging” of crossbred Wagyu beef during cold storage. The longissimus thoracic (Loin) and adductor muscles (Round) of hybrid [...] Read more.
Efficient cold-chain delivery is essential for maintaining a sustainable global food supply. This study used metabolomic analysis to examine meat quality changes during the “wet aging” of crossbred Wagyu beef during cold storage. The longissimus thoracic (Loin) and adductor muscles (Round) of hybrid Wagyu beef, a cross between the Japanese Black and Holstein–Friesian breeds, were packaged in vacuum film and refrigerated for up to 40 days. Sensory evaluation indicated an increase in the umami and kokumi taste owing to wet aging. Comprehensive analysis using gas chromatography-mass spectrometry identified metabolite changes during wet aging. In the Loin, 94 metabolites increased, and 24 decreased; in the Round, 91 increased and 18 decreased. Metabolites contributing to the umami taste of the meat showed different profiles during wet aging. Glutamic acid increased in a cold storage-dependent manner, whereas creatinine and inosinic acid degraded rapidly even during cold storage. In terms of lipids, wet aging led to an increase in free fatty acids. In particular, linoleic acid, a polyunsaturated fatty acid, increased significantly among the free fatty acids. These results provide new insight into the effects of wet aging on Wagyu-type beef, emphasizing the role of free amino acids, organic acids, and free fatty acids generated during cold storage. Full article
(This article belongs to the Section Food Metabolomics)
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<p>Sensory evaluation of hybrid Wagyu beef after cold storage. (<b>a</b>) Photographs show hybrid Wagyu beef’s longissimus thoracis (Loin) and adductor muscle (Round) cuts. (<b>b</b>) Radar chart showing the strength of each taste. The roasted beef was sensory evaluated by expert panelists (values are means of five cattle conducted by five panelists). The strength of each item was compared on Day 20 (dashed line) and Day 40 (bold line) relative to Day 0 (gray line; score set at 0) as the standard.</p>
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<p>Metabolomics analysis of hybrid Wagyu beef during cold storage. (<b>a</b>) The score plots of principal component analysis (PCA) of the metabolites. Vacuum-packed longissimus thoracis (Loin) and adductor muscle (Round) cuts of hybrid Wagyu beef were refrigerated from Day 0 to Day 40. The water-soluble fraction of the sample was prepared and analyzed by gas chromatography–mass spectrometry (each storage time for five cattle). The PCA score plot classified the Loin and Round sample groups into three groups according to metabolites: early (gray line), middle (dotted line), and late (solid line). The PCA score plots show Loins (R2X (1) = 0.488; R2X (2) = 0.116) and Rounds (R2X (1) = 0.440; R2X (2) = 0.135). Scaling of PCA was performed in UV mode. One sample was missing on Day 0 for Loin because of machine trouble. (<b>b</b>) Heat map obtained from hierarchical cluster analysis. The heat map visually shows changes in metabolites associated with cold storage. Horizontal columns in the heat map represent metabolites, and vertical columns represent cold storage time. Blue indicates low concentrations and red indicates high concentrations of metabolites. The color gradients in the heat map indicate changes in metabolite concentrations with cold storage time. Cluster analysis of heat map is performed using the clustering method (single linkage) and distance measurement (Pearson). (<b>c</b>) The Venn diagram shows the number of overlapping metabolites in the Loin and Round.</p>
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<p>Metabolites significantly increased or decreased with cold storage. (<b>a</b>) Fold-change in the top 25 increased metabolites with cold storage. The left graphs show longissimus thoracis (Loin), and the right graphs show adductor muscles (Round). (<b>b</b>) Fold-change in decreased metabolites with cold storage. Values in the graph are means of relative values at Day 40. Graphs show metabolites that showed significant differences (Student’s <span class="html-italic">t</span>-test; <span class="html-italic">n</span> = 5; ** <span class="html-italic">p</span> &lt; 0.05, * <span class="html-italic">p</span> &lt; 0.05). Error bars mean ± SD.</p>
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<p>Temporal changes in metabolites during cold storage. Metabolites exhibiting increased and decreased levels during cold storage. Graphs show the mean values of metabolites and metabolites exhibiting significant differences based on cold storage duration (Tukey–Kramer; <span class="html-italic">n</span> = 5; † <span class="html-italic">p</span> &lt; 0.05, ‡ <span class="html-italic">p</span> &lt; 0.05). Error bars mean ± SD.</p>
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<p>Changes in free fatty acid levels in cold storage. (<b>a</b>) Increase in total free fatty acid (FFA) levels during cold storage. (<b>b</b>) Fatty acid composition ratio of total fatty acids to FFAs on Day 20. (<b>c</b>) Increase in each FFA during cold storage. Graphs show mean values of FFAs (<span class="html-italic">n</span> = 5). Error bars mean ± SD.</p>
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<p>Schematic showing metabolic changes associated with wet aging. Wet aging increases free amino acid and FFA levels, depending on storage duration. Conversely, creatinine and inosinic acid are rapidly degraded. In particular, FFAs represent novel candidates for monitoring beef quality changes due to wet aging.</p>
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