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16 pages, 3467 KiB  
Article
Decision Feedback Equalization-Based Low-Complexity Interference Cancellation and Signal Detection Technique Based for Non-Orthogonal Signaling
by Myung-Sun Baek and Hyoung-Kyu Song
Mathematics 2024, 12(23), 3853; https://doi.org/10.3390/math12233853 - 7 Dec 2024
Viewed by 463
Abstract
FTN signalling is an effective communication method that achieves a high spectral efficiency. However, employing a symbol rate faster than the Nyquist rate disrupts the orthogonality between symbols, leading to unavoidable inter-symbol interference (ISI). To mitigate the effects of ISI, interference cancellation and [...] Read more.
FTN signalling is an effective communication method that achieves a high spectral efficiency. However, employing a symbol rate faster than the Nyquist rate disrupts the orthogonality between symbols, leading to unavoidable inter-symbol interference (ISI). To mitigate the effects of ISI, interference cancellation and signal detection processes are essential for FTN receivers. Conventional ISI reduction techniques often utilize trellis-based algorithms. However, as the number of states increases due to additional interference symbols, the complexity of these algorithms grows exponentially. To address this challenge, this paper explores a matrix computation-based interference cancellation technique tailored for FTN communication systems, aiming to significantly reduce the complexity of the ISI mitigation process. To execute ISI cancellation and signal detection more precisely, the proposed technique includes iterative interference cancellation and a signal detection process. When six interference symbols are considered, the complexity of the proposed technique is reduced by 97% compared with that of the conventional Viterbi algorithm. Furthermore, in the case of τ = 0.85, the performance of the proposed technique is about 1 dB better than that of the Viterbi algorithm at BER = 104. Full article
(This article belongs to the Section Engineering Mathematics)
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<p>Signal comparison between Nyquist rate and FTN.</p>
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<p>BER performance of FTN system with overall matrix computation.</p>
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<p>FTN signal model with <span class="html-italic">L</span> = 9, <span class="html-italic">C</span> = 3, <span class="html-italic">N</span> = 2 and <span class="html-italic">M</span> = 3.</p>
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<p>BER performance of FTN-based system with <span class="html-italic">τ</span> = 0.9.</p>
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<p>BER performance of FTN-based system with <span class="html-italic">τ</span> = 0.85.</p>
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<p>BER performance of FTN-based system with <span class="html-italic">τ</span> = 0.8.</p>
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<p>BER performance according to the values of matrix size <span class="html-italic">C</span> for the proposed scheme.</p>
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<p>BER performance of FTN-based system with post interference cancellation.</p>
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14 pages, 4275 KiB  
Article
Physical Layer Security Based on Non-Orthogonal Communication Technique with Coded FTN Signaling
by Myung-Sun Baek and Hyoung-Kyu Song
Mathematics 2024, 12(23), 3800; https://doi.org/10.3390/math12233800 - 30 Nov 2024
Viewed by 538
Abstract
In recent years, ensuring communication security at the physical layer has become increasingly important due to the transmission of sensitive information over various networks. Traditional approaches to physical layer security often rely on artificial noise generation, which may not offer robust solutions against [...] Read more.
In recent years, ensuring communication security at the physical layer has become increasingly important due to the transmission of sensitive information over various networks. Traditional approaches to physical layer security often rely on artificial noise generation, which may not offer robust solutions against advanced interception techniques. This study addresses these limitations by proposing a novel security technique based on non-orthogonal signaling using Faster-than-Nyquist (FTN) signaling. Unlike conventional FTN methods that utilize fixed symbol intervals, the proposed technique employs variable symbol intervals encoded as secure information, shared only with legitimate receivers. This encoding enables effective interference cancellation and symbol detection at the receiver, while preventing eavesdroppers from deciphering transmitted signals. The performance of the proposed technique was evaluated using the DVB-S2X system, a practical digital video broadcasting standard. Simulation results demonstrated that the proposed method maintains smooth communication with minimal performance degradation compared to traditional methods. Furthermore, eavesdroppers were unable to decode the transmitted signals, confirming the enhanced security. This research presents a new approach to physical layer security that does not depend on generating artificial noise, offering a path to more secure and efficient communication systems. Full article
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<p>Signal wave comparison between general communication and FTN signaling.</p>
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<p>Comparison between general FTN signaling and coded FTN signaling.</p>
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<p>Conceptual diagram for block-wise coded FTN and variable-length block-wise coded FTN signaling.</p>
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<p>Block/flow diagram of the proposed technique.</p>
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<p>DVB-S2X System with Coded FTN signaling.</p>
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<p>BER performances of symbol-wise coded FTN signaling and block-wise coded FTN signaling in DVB-S2X system with 16-QAM.</p>
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<p>BER performances of symbol-wise coded FTN signaling and block-wise coded FTN signaling in DVB-S2X system with QPSK.</p>
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<p>BER performance of variable-length block-wise coded FTN signaling in DVB-S2X system with 16-QAM.</p>
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<p>BER performance of variable-length block-wise coded FTN signaling in DVB-S2X system with QPSK.</p>
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<p>PAPR performance of DVB-S2 system with 16QAM according to <span class="html-italic">τ</span> values.</p>
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16 pages, 5588 KiB  
Article
Enhanced Carrier Phase Recovery Using Dual Pilot Tones in Faster-than-Nyquist Optical Transmission Systems
by Jialin You, Tao Yang, Yuchen Zhang and Xue Chen
Photonics 2024, 11(11), 1048; https://doi.org/10.3390/photonics11111048 - 7 Nov 2024
Viewed by 686
Abstract
Compared with high spectrum efficiency faster-than-Nyquist (FTN) backbone network, an enhanced carrier phase recovery based on dual pilot tones is more sensitive to capital cost in FTN metropolitan areas as well as inter-datacenter optical networks. The use of distributed feedback (DFB) lasers is [...] Read more.
Compared with high spectrum efficiency faster-than-Nyquist (FTN) backbone network, an enhanced carrier phase recovery based on dual pilot tones is more sensitive to capital cost in FTN metropolitan areas as well as inter-datacenter optical networks. The use of distributed feedback (DFB) lasers is a way to effectively reduce the cost. However, under high symbol rate FTN systems, equalization-enhanced phase noise (EEPN) induced by a DFB laser with large linewidth will significantly deteriorate the system performance. What is worse, in FTN systems, tight filtering introduces inter-symbol interference so severe that the carrier phase estimation (CPE) algorithm of the FTN systems is more sensitive to EEPN, thus it will lead to a more serious cycle slip problem. In this paper, an enhanced carrier phase recovery based on dual pilot tones is proposed to mitigate EEPN and suppress cycle slip, in which the chromatic dispersion (CD)-aware Tx and LO laser phase noise is estimated, respectively. Offline experiments results under 40 Gbaud polarization multiplexing (PM) 16-quadrature amplitude modulation (QAM) FTN wavelength division multiplexing (FTN-WDM) systems at 0.9 acceleration factor, 5 MHz laser linewidth, and 500 km transmission demonstrate that the proposed algorithm could bring about 0.65 dB improvement of the required SNR for the normalized generalized mutual information of 0.9 compared with the training sequence-based cycle slip suppression carrier phase estimation (TS-CSS) algorithm. Full article
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<p>The enhanced carrier phase recovery based on dual pilot tones in FTN systems. (<b>a</b>) Optical spectrum of pilot tones and payload. (<b>b</b>) The enhanced carrier phase recovery based on dual pilot tones.</p>
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<p>The effect of different EEPNs on the performance of the BPS algorithm.</p>
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<p>The MSE of high-frequency pilot tone and low-frequency pilot tone.</p>
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<p>The PSR vs. frequency of high-frequency pilot tone under (<b>a</b>) 1 MHz Tx/LO LLW and 300 km transmission; (<b>b</b>) 1 MHz Tx/LO LLW and 500 km transmission; (<b>c</b>) 5 MHz Tx/LO LLW and 300 km transmission; (<b>d</b>) 5 MHz Tx/LO LLW and 500 km transmission.</p>
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<p>Required SNR vs. the PSR of low-frequency pilot tone under (<b>a</b>) 1 MHz Tx/LO LLW; (<b>b</b>) 5 MHz Tx/LO LLW.</p>
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<p>Required SNR vs. pilot tone extraction bandwidth under (<b>a</b>) 1 MHz Tx/LO LLW; (<b>b</b>) 5 MHz Tx/LO LLW.</p>
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<p>(<b>a</b>) Required SNR improvement due to EEPN compensation vs. span number under 5 MHz Tx/LO LLW. (<b>b</b>) Required SNR vs. combined laser bandwidth under 500 km transmission.</p>
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<p>Offline experiment setup for 40 GBaud PM-16QAM FTN-WDM systems using proposed algorithm.</p>
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<p>The PSR vs. frequency of the high-frequency pilot tone under (<b>a</b>) 5 MHz Tx/LO LLW and 300 km transmission; (<b>b</b>) 5 MHz Tx/LO LLW and 500 km transmission.</p>
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<p>Required SNR vs. the PSR of low-frequency pilot tone under 5 MHz Tx/LO LLW.</p>
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<p>Required SNR vs. pilot tone extraction bandwidth under 5 MHz Tx/LO LLW.</p>
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<p>Required SNR improvement due to EEPN compensation vs. span number under 5 MHz Tx/LO LLW.</p>
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16 pages, 3824 KiB  
Article
A Hybrid Network Integrating MHSA and 1D CNN–Bi-LSTM for Interference Mitigation in Faster-than-Nyquist MIMO Optical Wireless Communications
by Minghua Cao, Qing Yang, Genxue Zhou, Yue Zhang, Xia Zhang and Huiqin Wang
Photonics 2024, 11(10), 982; https://doi.org/10.3390/photonics11100982 - 19 Oct 2024
Viewed by 938
Abstract
To mitigate inter-symbol interference (ISI) caused by Faster-than-Nyquist (FTN) technology in a multiple input multiple output (MIMO) optical wireless communication (OWC) system, we propose an ISI cancellation algorithm that combines multi-head self-attention (MHSA), a one-dimensional convolutional neural network (1D CNN), and bi-directional long [...] Read more.
To mitigate inter-symbol interference (ISI) caused by Faster-than-Nyquist (FTN) technology in a multiple input multiple output (MIMO) optical wireless communication (OWC) system, we propose an ISI cancellation algorithm that combines multi-head self-attention (MHSA), a one-dimensional convolutional neural network (1D CNN), and bi-directional long short-term memory (Bi-LSTM). This hybrid network extracts data features using 1D CNN and captures sequential information with Bi-LSTM, while incorporating MHSA to comprehensively reduce ISI. We analyze the impact of antenna numbers, acceleration factors, wavelength, and turbulence intensity on the system’s bit error rate (BER) performance. Additionally, we compare the waveform graphs and amplitude–frequency characteristics of FTN signals before and after processing, specifically comparing sampled values of four-pulse-amplitude modulation (4PAM) signals with those obtained after ISI cancellation. The simulation results demonstrate that within the Mazo limit for selecting acceleration factors, our proposal achieves a 7 dB improvement in BER compared to the conventional systems without deep learning (DL)-based ISI cancellation algorithms. Furthermore, compared to systems employing a point-by-point elimination adaptive pre-equalization algorithm, our proposal exhibits comparable BER performance to orthogonal transmission systems while reducing computational complexity by 31.15%. Full article
(This article belongs to the Special Issue Advanced Technologies in Optical Wireless Communications)
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<p>Schematic of MIMO-FTN-OWC system.</p>
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<p>The structure of 1D CNN (Different colors represent different filters).</p>
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<p>The structure of Bi-LSTM.</p>
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<p>Calculation process of the double-head self-attention mechanism.</p>
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<p>The structure of MHSA–1D CNN–Bi-LSTM network (Blue represents the input and output signals; purple represents the 1D-CNN; light yellow represents the normalization layer; green represents the Bi-LSTM network; red represents the multi-head self-attention mechanism layer; and orange represents the fully connected layer).</p>
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<p>Magnitude–frequency characteristics.</p>
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<p>Comparison of signal sampling values (<b>a</b>) 4PAM signals (<b>b</b>) FTN signals (<b>c</b>) signals after ISI cancellation.</p>
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<p>Relationship between BER and SNR for our proposal and orthogonal system (OTS refers to Orthogonal Transmission System).</p>
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<p>Relationship between BER and SNR under different numbers of antennas.</p>
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<p>Relationship between BER and SNR under different turbulence intensities.</p>
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<p>Relationship between BER and SNR under different laser wavelengths.</p>
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<p>Relationship between BER and SNR under different acceleration factors.</p>
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<p>Relationship between acceleration factor and BER.</p>
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15 pages, 5362 KiB  
Article
Nebulized Lipopolysaccharide Causes Delayed Cortical Neuroinflammation in a Murine Model of Acute Lung Injury
by Katharina Ritter, René Rissel, Miriam Renz, Alexander Ziebart, Michael K. E. Schäfer and Jens Kamuf
Int. J. Mol. Sci. 2024, 25(18), 10117; https://doi.org/10.3390/ijms251810117 - 20 Sep 2024
Cited by 1 | Viewed by 959
Abstract
Lung injury caused by respiratory infection is a major cause of hospitalization and mortality and a leading origin of sepsis. Sepsis-associated encephalopathy and delirium are frequent complications in patients with severe lung injury, yet the pathogenetic mechanisms remain unclear. Here, 70 female C57BL/6 [...] Read more.
Lung injury caused by respiratory infection is a major cause of hospitalization and mortality and a leading origin of sepsis. Sepsis-associated encephalopathy and delirium are frequent complications in patients with severe lung injury, yet the pathogenetic mechanisms remain unclear. Here, 70 female C57BL/6 mice were subjected to a single full-body-exposure with nebulized lipopolysaccharide (LPS). Neuromotor impairment was assessed repeatedly and brain, blood, and lung samples were analyzed at survival points of 24 h, 48 h, 72 h, and 96 h after exposure. qRT-PCR revealed increased mRNA-expression of TNFα and IL-1β 24 h and 48 h after LPS-exposure in the lung, concomitantly with increased amounts of proteins in bronchoalveolar lavage and interstitial lung edema. In the cerebral cortex, at 72 h and/or 96 h after LPS exposure, the inflammation- and activity-associated markers TLR4, GFAP, Gadd45b, c-Fos, and Arc were increased. Therefore, single exposure to nebulized LPS not only triggers an early inflammatory reaction in the lung but also induces a delayed neuroinflammatory response. The identified mechanisms provide new insights into the pathogenesis of sepsis-associated encephalopathy and might serve as targets for future therapeutic approaches. Full article
(This article belongs to the Special Issue Molecular Relationships between Brain and Lung Diseases)
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Graphical abstract

Graphical abstract
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<p>Single exposure to nebulized LPS induced inflammatory gene expression and histological damage in the lung. (<b>A</b>) Representative images of lung tissue samples in HE staining of all study groups. Scale bar: 500 μm. (<b>B</b>) Gene expression analyses were performed in the lung tissue samples of all study groups and normalized to PPIA. mRNA-expression of <span class="html-italic">IL-6</span> and <span class="html-italic">TNFα</span> were significantly increased 24 h and 48 h after LPS exposure in comparison to the vehicle as well as 72 h and 96 h after nebulization. (<b>C</b>,<b>D</b>) Histopathological damage was assessed by measurement of the tissue-free area in HE-stained lung sections and a semiquantitative scoring system in different section levels of each specimen (veh, 24 h, 48 h, 72 h each <span class="html-italic">n =</span> 6, 96 h, <span class="html-italic">n =</span> 5). Interstitial edema was significantly increased 24 h after LPS exposure compared to the vehicle, and tissue-free area was reduced at 24 h in comparison to veh, 72 h, and 96 h after nebulization. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. Values of all data represent mean ± SEM; <span class="html-italic">p</span> values were calculated by one-way-ANOVA followed by Holm–Sidak’s multiple comparison test.</p>
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<p>Single LPS exposure exerts short-term effects on neuromotor performance and translocates the inflammatory stimulus to the bloodstream. (<b>A</b>) Schematic description of the study design. Female C57BL/6 mice were exposed to nebulized lipopolysaccharide (LPS) or vehicle solution (veh) and randomized in groups with 24 h, 48 h, 72 h or 96 h survival. (Created in BioRender. Ritter, K. (2024) <a href="https://biorender.com/l20m471" target="_blank">https://biorender.com/l20m471</a> (accessed on 15 September 2024)). (<b>B</b>) Neuromotor deficit was assessed repetitively by Neurological Severity Score (NSS). All mice subjected to nebulized LPS showed increased scores indicating greater impairment the same day after exposure (expos.) in comparison to their pre-exposure (pre.) performance and vehicle, with this effect subsiding from 24 d after exposure. (<b>C</b>): Body weight was registered daily during the experiment. Groups subjected to LPS showed a reduction in body weight 24 h after exposure, yet this observation did not obtain a statistical level of significance. (<b>D</b>): Plasma concentrations of lipopolysaccharide-binding protein (LBP) were determined by ELISA in all groups (<span class="html-italic">n =</span> 8 each). LBP levels were significantly increased 24 h and 48 h after exposure in comparison to vehicle as well as 72 h and 96 h. (<b>E</b>): Protein concentration in bronchoalveolar lavage (BAL) was quantified by Lowry assay in all groups (<span class="html-italic">n =</span> 7 each). Mice 24 h and 48 h after exposure showed significantly increased protein levels in BAL compared to the vehicle as well as 72 h and 96 h after exposure. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. Values of all data represent mean ± SEM; <span class="html-italic">p</span> values were calculated by One-way- (<b>D</b>,<b>E</b>) or Two-way-ANOVA (<b>B</b>,<b>C</b>) followed by Holm–Sidak’s multiple comparison test.</p>
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<p>Single exposure with nebulized LPS leads to delayed neuroinflammatory gene expression in the cerebral cortex and hippocampus. Gene expression analyses for several markers of inflammation and neuroinflammation in tissue samples of cerebral cortex (<b>A</b>) and hippocampus (<b>B</b>) were performed by qPCR in all study groups and normalized to <span class="html-italic">PPIA</span>. While mRNA expression of <span class="html-italic">IL-6</span> was not induced by LPS exposure in both regions, expression of <span class="html-italic">GFAP</span> and <span class="html-italic">c-Fos</span> was increased 72 h and 96 h after LPS exposure in comparison to vehicle as well as 24 h and 48 h after nebulization in the cortical brain, yet unaffected in the hippocampus. Expression of <span class="html-italic">Gadd45b</span> was strongly increased 72 h and 96 h after LPS exposure in the cortical brain and also elevated in the hippocampus compared to vehicle and the earlier examination time points. Expression of the <span class="html-italic">Arc</span> gene was significantly increased in the cortex 72 h and 96 h and in the hippocampus 72 h after exposure in comparison to vehicle as well as 24 h and 48 h after nebulization. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. Values of all data represent mean ± SEM; <span class="html-italic">p</span> values were calculated by One-way-ANOVA followed by Holm–Sidak’s multiple comparison test.</p>
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<p>Single LPS-exposure induces astrocytic response in the dentate gyrus. (<b>A</b>): Exemplary demonstration of the analyzed hippocampal brain region (bregma −2.00 mm, scale bar 1 mm). (<b>B</b>): Count of GFAP immunopositive particles tended to be increased 96 h after LPS nebulization compared to vehicle. (<b>C</b>): Representative images of GFAP-immunostaining in the dentate gyrus of all study groups. Scale bar: 200 μm. Values of all data represent mean ± SEM; <span class="html-italic">p</span> values were calculated by One-way-ANOVA followed by Holm–Sidak’s multiple comparison test.</p>
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23 pages, 1202 KiB  
Article
Energy Efficiency for Faster-than-Nyquist Data Transmission Using Processing Algorithms with Decision Feedback
by Wenjing Shang, Ilya Lavrenyuk, Sergey Makarov, Anna Ovsyannikova, Sergey Zavjalov, Dingfeng Yu and Wei Xue
Symmetry 2024, 16(8), 1001; https://doi.org/10.3390/sym16081001 - 6 Aug 2024
Cited by 1 | Viewed by 913
Abstract
One of the ways to increase the volume of transmitted information is to increase the bit rate above the Nyquist barrier. However, an increase in bit rate in the case of FTN (Faster-Than-Nyquist) signals leads to an increase in energy costs for receiving [...] Read more.
One of the ways to increase the volume of transmitted information is to increase the bit rate above the Nyquist barrier. However, an increase in bit rate in the case of FTN (Faster-Than-Nyquist) signals leads to an increase in energy costs for receiving information on channels with limited bandwidth, for example, in Digital Video Broadcasting satellite systems like DVB-S2/S2X. It is possible to minimize energy losses by using the processing algorithm “maximum likelihood sequence estimation”. However, the computational complexity of this algorithm is extremely high, which limits its use, especially in terrestrial mobile satellite terminals. We propose a new bit-by-bit decision feedback algorithm with maximum likelihood ratio estimation of subsequent symbols in the observation interval. This algorithm provides minimal energy costs comparable to the method “maximum likelihood sequence estimation” at speeds 2–3 times higher than the Nyquist barrier. At the same time, the complexity is two orders of magnitude less. It is shown by simulation for a channel with additive noise that energy losses in relation to the potential bit error rate (BER) are less than 4.5 dB. In the presence of Rayleigh fading, the application of the proposed algorithm makes it possible to provide the processing of FTN signals for double bit rates in urban areas with energy costs equal to 12 dB when using an equalizer. We give numerical estimations of the increase in computational complexity for the proposed processing algorithm. It is shown that an increase in the bit rate by 1.5 times leads to an increase in the computational complexity by more than an order of magnitude. The same conclusion can be reformulated in another form: for the proposed algorithm, each decibel of energy gain is achieved by increasing the number of computational operations by 1.5×105. It is experimentally shown that additional energy losses due to non-ideal phase and timing synchronization are no more than 1 dB when the proposed algorithm is applied in a fading channel. The energy costs in fading channels relative to a stationary channel for twice the Nyquist rate are equal to 13.8 dB when using an equalizer. Full article
(This article belongs to the Section Engineering and Materials)
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<p>Uncoded FTN signaling transceiver architecture.</p>
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<p>Possible realization of processing algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) for SDR.</p>
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<p>Possible realization of processing algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) for SDR.</p>
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<p>BER performance. Channel with constant parameters. Processing algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>).</p>
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<p>BER performance. Channel with constant parameters. Processing algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) in case of high rates.</p>
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<p>BER performance for different algorithms for <math display="inline"><semantics> <mrow> <mi>R</mi> <mo>=</mo> <mn>1.42</mn> <mo>/</mo> <mi>T</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>β</mi> <mo>=</mo> <mn>0.2</mn> </mrow> </semantics></math>.</p>
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<p>BER performance. Rayleigh channel. Processing algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) in case of high rates.</p>
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<p>Energy efficiency vs. number of operations for algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>).</p>
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<p>Experimental setup.</p>
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<p>Signal sequence at the output of the transmitter (<b>a</b>) and spectral characteristics (<b>b</b>).</p>
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<p>Experimental BER performance for proposed algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>).</p>
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<p>Experimental BER performance for proposed algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) in multipath channel.</p>
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<p>Experimental BER performance for proposed algorithm (<a href="#FD9-symmetry-16-01001" class="html-disp-formula">9</a>) with increased bit rate in multipath channel.</p>
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18 pages, 627 KiB  
Article
Clinical and Diagnostic Features of Post-Acute COVID-19 Vaccination Syndrome (PACVS)
by Anna Katharina Mundorf, Amelie Semmler, Harald Heidecke, Matthias Schott, Falk Steffen, Stefan Bittner, Karl J. Lackner, Karin Schulze-Bosse, Marc Pawlitzki, Sven Guenther Meuth, Frank Klawonn, Jana Ruhrländer and Fritz Boege
Vaccines 2024, 12(7), 790; https://doi.org/10.3390/vaccines12070790 - 18 Jul 2024
Cited by 3 | Viewed by 13628
Abstract
Post-acute COVID-19 vaccination syndrome (PACVS) is a chronic disease triggered by SARS-CoV-2 vaccination (estimated prevalence 0.02%). PACVS is discriminated from the normal post-vaccination state by altered receptor antibodies, most notably angiotensin II type 1 and alpha-2B adrenergic receptor antibodies. Here, we investigate the [...] Read more.
Post-acute COVID-19 vaccination syndrome (PACVS) is a chronic disease triggered by SARS-CoV-2 vaccination (estimated prevalence 0.02%). PACVS is discriminated from the normal post-vaccination state by altered receptor antibodies, most notably angiotensin II type 1 and alpha-2B adrenergic receptor antibodies. Here, we investigate the clinical phenotype using a study registry encompassing 191 PACVS-affected persons (159 females/32 males; median ages: 39/42 years). Unbiased clustering (modified Jaccard index) of reported symptoms revealed a prevalent cross-cohort symptomatology of malaise and chronic fatigue (>80% of cases). Overlapping clusters of (i) peripheral nerve dysfunction, dysesthesia, motor weakness, pain, and vasomotor dysfunction; (ii) cardiovascular impairment; and (iii) cognitive impairment, headache, and visual and acoustic dysfunctions were also frequently represented. Notable abnormalities of standard serum markers encompassing increased interleukins 6 and 8 (>80%), low free tri-iodine thyroxine (>80%), IgG subclass imbalances (>50%), impaired iron storage (>50%), and increased soluble neurofilament light chains (>30%) were not associated with specific symptoms. Based on these data, 131/191 participants fit myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) and simultaneously also several other established dysautonomia syndromes. Furthermore, 31/191 participants fit none of these syndromes. In conclusion, PACVS could either be an outlier of ME/CFS or a dysautonomia syndrome sui generis. Full article
(This article belongs to the Special Issue Research on Immune Response and Vaccines: 2nd Edition)
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<p>Overlap of complex dysautonomia syndromes with symptoms reported by the PACVS study cohort. ME/CSF, POTS, MCAS, and SFN were assigned to the study participants according to published guidelines [<a href="#B4-vaccines-12-00790" class="html-bibr">4</a>,<a href="#B5-vaccines-12-00790" class="html-bibr">5</a>,<a href="#B7-vaccines-12-00790" class="html-bibr">7</a>,<a href="#B8-vaccines-12-00790" class="html-bibr">8</a>]. PACVS subjects were assigned a given syndrome if exhibiting <span class="html-italic">n</span> ≥ the cohort average of symptoms associated with that syndrome or if diagnosed after vaccination with that syndrome by a physician. A total of <span class="html-italic">n</span> = 31 PACVS subjects could not be assigned to any of the four syndromes (labeled “NONE”). Numbers indicate the <span class="html-italic">n</span> of study participants assigned to a given syndrome or syndrome intersection.</p>
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<p>Hypothesis-free clustering of PACVS-associated symptoms. Hierarchical clustering of symptoms reported by the participants of the PACVS study cohort was performed using a modified Jaccard index considering distances of similarities and dissimilarities. The eight clusters indicated at the bottom were selected at the level h = 1.8 based on medical knowledge using the cut-tree function of the computer language R (details of clusters are in <a href="#vaccines-12-00790-t002" class="html-table">Table 2</a>).</p>
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<p>Matching of study participants to symptom clusters. Study participants were assigned to the eight clusters (<a href="#vaccines-12-00790-f002" class="html-fig">Figure 2</a>) based on the modified Jaccard index (mean of Jaccard index and Jaccard index of the negated values). Participants highlighted in red strongly matched the symptom cluster, those in white moderately matched the cluster, and those in blue matched the cluster poorly or not at all (value = 1: strong correlation with the cluster based on the modified Jaccard index; value = 0: no correlation with the cluster based on the modified Jaccard index).</p>
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9 pages, 1379 KiB  
Case Report
Stroke Caused by Vasculitis Induced by Periodontitis-Associated Oral Bacteria after Wisdom Teeth Extraction
by David Kiramira, Timo Uphaus, Ahmed Othman, Ralf Heermann, James Deschner and Lena Katharina Müller-Heupt
Brain Sci. 2024, 14(6), 550; https://doi.org/10.3390/brainsci14060550 - 28 May 2024
Cited by 1 | Viewed by 1638
Abstract
Invasive dental procedures, such as wisdom teeth removal, have been identified as potential triggers for vascular events due to the entry of oral bacteria into the bloodstream, leading to acute vascular inflammation and endothelial dysfunction. This study presents the case of a 27-year-old [...] Read more.
Invasive dental procedures, such as wisdom teeth removal, have been identified as potential triggers for vascular events due to the entry of oral bacteria into the bloodstream, leading to acute vascular inflammation and endothelial dysfunction. This study presents the case of a 27-year-old healthy male who developed ischemic stroke resulting from bacteremia after undergoing wisdom teeth extraction. Initially, the patient experienced fever and malaise, which were followed by right-sided hemiplegia. Diagnostic imaging, including a CT scan, identified a subacute infarction in the posterior crus of the left internal capsule, and MRI findings indicated inflammatory changes in the masticatory muscles. Further investigations involving biopsies of the masticatory muscles, along with blood and cerebrospinal fluid samples, confirmed bacterial meningitis with associated vasculitis. Notably, oral bacteria linked to periodontitis, including Porphyromonas gingivalis, Fusobacterium nucleatum, Tannerella forsythia, and Parvimonas micra, were found in the biopsies and microbiological analyses. To the best of our knowledge, this is the first reported case showing that bacteremia following dental procedures can lead to such severe neurological outcomes. This case underscores the importance of recognizing bacteremia-induced vasculitis in patients presenting with neurological symptoms post-dental procedures, emphasizing the broader implications of oral infections in such pathologies. Full article
(This article belongs to the Special Issue Biomarkers of Vascular Changes in Neurological Diseases)
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<p>Depiction of an ischemic lesion (white arrow) in the posterior limb of the left internal capsule (<b>A</b>. choroidal artery territory) on MRI. Demarcation on T2 FLAIR-w image (<b>A</b>) and Diffusion restriction on b1000 image (<b>B</b>) and ADC map (<b>C</b>).</p>
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<p>Meningitis and secondary CNS vasculitis on MRI. Axial (<b>A</b>) and coronal (<b>B</b>) reconstructions of contrast-enhanced T1 SPACE image showing basal contrast enhancement predominantly in the basal cisterns around the circulus of Willis (circle). TOF MR angiography (MIP, posteroanterior view—(<b>C</b>)) shows severe stenoses of the intradural proximal cerebral arteries, predominantly in the distal ICA including carotid T bilaterally (arrows).</p>
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<p>Contrast enhanced axial T1 SPACE showing a marked inflammatory contrast enhancement of the mandible head and the surrounding soft tissue, especially the lateral pterygoidal and masseter muscle.</p>
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22 pages, 5266 KiB  
Article
Functionalized Gold Nanoparticles and Halogen Bonding Interactions Involving Fentanyl and Fentanyl Derivatives
by Molly M. Sherard, Jamie S. Kaplan, Jeffrey H. Simpson, Kevin W. Kittredge and Michael C. Leopold
Nanomaterials 2024, 14(11), 917; https://doi.org/10.3390/nano14110917 - 23 May 2024
Cited by 4 | Viewed by 1677
Abstract
Fentanyl (FTN) and synthetic analogs of FTN continue to ravage populations across the globe, including in the United States where opioids are increasingly being used and abused and are causing a staggering and growing number of overdose deaths each year. This growing pandemic [...] Read more.
Fentanyl (FTN) and synthetic analogs of FTN continue to ravage populations across the globe, including in the United States where opioids are increasingly being used and abused and are causing a staggering and growing number of overdose deaths each year. This growing pandemic is worsened by the ease with which FTN can be derivatized into numerous derivatives. Understanding the chemical properties/behaviors of the FTN class of compounds is critical for developing effective chemical detection schemes using nanoparticles (NPs) to optimize important chemical interactions. Halogen bonding (XB) is an intermolecular interaction between a polarized halogen atom on a molecule and e-rich sites on another molecule, the latter of which is present at two or more sites on most fentanyl-type structures. Density functional theory (DFT) is used to identify these XB acceptor sites on different FTN derivatives. The high toxicity of these compounds necessitated a “fragmentation” strategy where smaller, non-toxic molecules resembling parts of the opioids acted as mimics of XB acceptor sites present on intact FTN and its derivatives. DFT of the fragments’ interactions informed solution measurements of XB using 19F NMR titrations as well as electrochemical measurements of XB at self-assembled monolayer (SAM)-modified electrodes featuring XB donor ligands. Gold NPs, known as monolayer-protected clusters (MPCs), were also functionalized with strong XB donor ligands and assembled into films, and their interactions with FTN “fragments” were studied using voltammetry. Ultimately, spectroscopy and TEM analysis were combined to study whole-molecule FTN interactions with the functionalized MPCs in solution. The results suggested that the strongest XB interaction site on FTN, while common to most of the drug’s derivatives, is not strong enough to induce NP-aggregation detection but may be better exploited in sensing schemes involving films. Full article
(This article belongs to the Special Issue Synthesis and Applications of Gold Nanoparticles: 2nd Edition)
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<p>DFT-generated, geometry-optimized structure adducts of IPFB interacting with FTN at the (<b>A</b>) N1 and (<b>B</b>) O1 XB-accepting sites. Notes: Geometry-optimized XB adducts of IPFB with other FTN derivatives are provided in <a href="#app1-nanomaterials-14-00917" class="html-app">Supplementary Materials</a> with atomic color codes showing carbon (grey), hydrogen (white), nitrogen (blue), oxygen (red), fluorine (light blue) and iodine (fuchsia).</p>
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<p>Representative NMR titration for determining XB interaction strength: (<b>A</b>) <sup>19</sup>F NMR spectra of the <span class="html-italic">o</span>-fluorine resonance on IPFB (XB donor) when subjected to increasing concentrations of the XB acceptor, 1-benzylpiperidine, or Fragment 5A (<a href="#nanomaterials-14-00917-sch002" class="html-scheme">Scheme 2</a>); (<b>B</b>) the corresponding binding isotherm that yields an association constant (K<sub>a</sub>) indicative of XB interaction strength (solvent: cyclohexane). Note: NMR titration analyses for other fragments are provided in <a href="#app1-nanomaterials-14-00917" class="html-app">Supplementary Materials</a>.</p>
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<p>Representative CV of (<b>A</b>) C<sub>dl</sub> (4.4 mM PBS) and (<b>B</b>) 5 mM K<sub>3</sub>Fe(CN)<sub>6</sub> in 0.5 M KCl at (a) bare/clean gold electrode, (b) a C6/Ligand 1 mixed SAM modification, and (c) the same C6/Ligand 1 mixed SAM after exposure to 5 mM Frag 5A (1-BP) solution (cyclohexane); control film of C6/MUA mixed SAM exposed to the same Frag 5A solution (inset); and (<b>C</b>) C<sub>dl</sub> results summary for films before (grey) and after (hashed) overnight (12 h) exposure to Frag 5A. Note: Scan rates = 100 mV/s; error bars represent standard error (n ≥ 3).</p>
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<p>(<b>A</b>) Schematic of a place-exchange reaction of <span class="html-italic">unf</span>-MPCs with Ligand 2 to create <span class="html-italic">f</span>-MPCs with XB donor capability in three dimensions; (<b>B</b>) representative CV showing change in C<sub>dl</sub> of <span class="html-italic">f</span>-MPC film assembly before (a) and after (b) the film’s exposure to a 5 mM solution of Frag 5A (1-BP) in cyclohexane; and (<b>C</b>) corresponding CV (100 mV/sec) of 5 mM K<sub>3</sub>Fe(CN)<sub>6</sub> in 0.5 M KCl at the same films and exposure to Frag 5A.</p>
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<p>(<b>A</b>) UV–Vis spectra of <span class="html-italic">f</span>-MPC and <span class="html-italic">unf</span>-MPC (inset) solutions monitored over time after the addition of 5 mg of fentanyl; and (<b>B</b>) illustrations of NPs undergoing (a) aggregation vs. (b) agglomeration. Note: Both <span class="html-italic">f</span>-MPC and <span class="html-italic">unf</span>-MPC solutions were prepared to have a starting absorbance at 350 nm of 0.250 a.u. in THF; in the case of the <span class="html-italic">unf</span>-MPC with fentanyl, only spectra from the first 24 h are shown for clarity.</p>
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<p>TEM imaging of <span class="html-italic">f</span>-MPC solutions both (<b>A</b>) before and (<b>B</b>) after the addition of fentanyl (5 mg) to the solutions that are consistent with agglomeration of the material in the presence of the opioid (Inset: additional example image of NP agglomeration). Note: dynamic light scattering measurements were inconsistent on a sample-to-sample basis due to the inherent polydispersity of the as-prepared MPCs, the suspected presence of dust/larger particles skewing results, and the weakness of the XB interactions present.</p>
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<p>Chemical structures of (<b>A</b>) fentanyl (dashed) and select examples of synthetic fentanyl derivatives including (<b>B</b>) <span class="html-italic">a</span>-mefentanyl, (<b>C</b>) crotonylfentanyl, (<b>D</b>) cyclopropylfentanyl, (<b>E</b>) mefentanyl, (<b>F</b>) methoxyacetylfentanyl, (<b>G</b>) <span class="html-italic">p</span>-fluorobutyrylfentanyl, (<b>H</b>) ohmefentanyl, (<b>I</b>) phenaridine, (<b>J</b>) valerylfentanyl, and (<b>K</b>) <span class="html-italic">p</span>-methoxybutyrylfentanyl.</p>
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<p>DFT results from analysis of IPFB interacting with specific “fragments” of the FTN structure that emphasize O1- and N1-accepting sites: Fragment 1 (N-methyl-N-phenylpropanamide, not purchased), Fragment 2 (N-cyclohexyl-N-phenylpropanamide, AA Blocks, Inc., San Diego, CA, USA), Fragment 3 (N-propylacetanilide, City Chemical LLC, West Haven, CT, USA), Fragment 4 (N-methyl-N-phenylbutanamide, AA Blocks, Inc., San Diego, CA, USA), Fragment 5 (1-phenyletherpiperidine, not purchased), Fragment 5A (1-benzylpiperidine, Ambeed, Arlinton Hts, IL, USA), and Fragment 6 (Acetanilide, Oakwood Chemical, Estill, SC, USA).</p>
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<p>(<b>A</b>) XB donor ligands, hexadecafluoro-8-iodooctane-1-thiol (Ligand 1, <b>left</b>) and 2,3,5,6-tetrafluoro-4-iodo-N-(4-mercaptophenyl)-benzamide (Ligand 2, <b>right</b>), were place-exchanged into hexanethiolate (C6)-modified films to form mixed SAMs; (<b>B</b>) mixed SAMs featuring XB donor sites were exposed to XB acceptor molecules and tested electrochemically.</p>
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17 pages, 10923 KiB  
Article
A Dynamic Evolutionary Analysis of the Vulnerability of Global Food Trade Networks
by Hao Xu, Niu Niu, Dongmei Li and Chengjie Wang
Sustainability 2024, 16(10), 3998; https://doi.org/10.3390/su16103998 - 10 May 2024
Cited by 2 | Viewed by 1635
Abstract
The global food trade network (FTN) is a critical infrastructure for achieving the Sustainable Development Goals (SDGs). The FTN’s vulnerability to geopolitical conflicts, public health crises, and climate change events directly impacts food security and the ability to meet the SDGs. This study [...] Read more.
The global food trade network (FTN) is a critical infrastructure for achieving the Sustainable Development Goals (SDGs). The FTN’s vulnerability to geopolitical conflicts, public health crises, and climate change events directly impacts food security and the ability to meet the SDGs. This study aims to analyze the dynamic evolution of the vulnerability of FTN, focusing on the period from 2000 to 2022, to aim for strategies for enhancing the resilience and sustainability of the global food system. Based on complex network analysis, we examine the structural characteristics and evolution of FTN for four major crops: soybeans, wheat, rice, and maize. We identify a trend towards increased network density and regionalization, with a decline in average shortest path length (ASPL) and an increase in the average clustering coefficient (ACC). These changes indicate a shift towards a more interconnected and resilient FTN in response to various shocks, including the COVID-19 pandemic and the Russia–Ukraine conflict. The findings suggest that the global FTN has adapted to increase resilience, which is essential for achieving the SDGs related to food security and sustainable development. The study’s insights can guide policy interventions to further strengthen the network against future shocks and promote global food security. Full article
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<p>Global soybean trade flows structure for chosen years.</p>
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<p>Global rice trade flows structure for chosen years.</p>
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<p>Global wheat trade flows structure for chosen years.</p>
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<p>Global maize trade flows structure for chosen years.</p>
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<p>Evolution of average clustering, average shortest path length, network density, and global efficiency of FTN.</p>
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<p>Kernel density distribution of degree centrality and closeness centrality.</p>
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22 pages, 5825 KiB  
Article
Valproic Acid Treatment after Traumatic Brain Injury in Mice Alleviates Neuronal Death and Inflammation in Association with Increased Plasma Lysophosphatidylcholines
by Regina Hummel, Erika Dorochow, Sonja Zander, Katharina Ritter, Lisa Hahnefeld, Robert Gurke, Irmgard Tegeder and Michael K. E. Schäfer
Cells 2024, 13(9), 734; https://doi.org/10.3390/cells13090734 - 23 Apr 2024
Cited by 1 | Viewed by 2422
Abstract
The histone deacetylase inhibitor (HDACi) valproic acid (VPA) has neuroprotective and anti-inflammatory effects in experimental traumatic brain injury (TBI), which have been partially attributed to the epigenetic disinhibition of the transcription repressor RE1-Silencing Transcription Factor/Neuron-Restrictive Silencer Factor (REST/NRSF). Additionally, VPA changes post-traumatic brain [...] Read more.
The histone deacetylase inhibitor (HDACi) valproic acid (VPA) has neuroprotective and anti-inflammatory effects in experimental traumatic brain injury (TBI), which have been partially attributed to the epigenetic disinhibition of the transcription repressor RE1-Silencing Transcription Factor/Neuron-Restrictive Silencer Factor (REST/NRSF). Additionally, VPA changes post-traumatic brain injury (TBI) brain metabolism to create a neuroprotective environment. To address the interconnection of neuroprotection, metabolism, inflammation and REST/NRSF after TBI, we subjected C57BL/6N mice to experimental TBI and intraperitoneal VPA administration or vehicle solution at 15 min, 1, 2, and 3 days post-injury (dpi). At 7 dpi, TBI-induced an up-regulation of REST/NRSF gene expression and HDACi function of VPA on histone H3 acetylation were confirmed. Neurological deficits, brain lesion size, blood–brain barrier permeability, or astrogliosis were not affected, and REST/NRSF target genes were only marginally influenced by VPA. However, VPA attenuated structural damage in the hippocampus, microgliosis and expression of the pro-inflammatory marker genes. Analyses of plasma lipidomic and polar metabolomic patterns revealed that VPA treatment increased lysophosphatidylcholines (LPCs), which were inversely associated with interleukin 1 beta (Il1b) and tumor necrosis factor (Tnf) gene expression in the brain. The results show that VPA has mild neuroprotective and anti-inflammatory effects likely originating from favorable systemic metabolic changes resulting in increased plasma LPCs that are known to be actively taken up by the brain and function as carriers for neuroprotective polyunsaturated fatty acids. Full article
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<p>VPA functions as HDACi and REST/NRSF gene expression is up-regulated after CCI. (<b>A</b>) Immunoblot showing the pharmacologic effect of valproic acid (VPA) with increased acetyl-histone H3 levels in perilesional brain samples of VPA-treated mice (pooled from <span class="html-italic">n</span> = 11 per group) Antibodies used: 1: acetyl-histone H3 (Lys9) (C5B11); 2: acetyl-histone H3 (Lys27) (D5E4); 3: acetyl-histone H3 (Lys18) (D8Z5H); 4: acetyl-histone H3 (Lys14) (D4B9); 5: acetyl-histone H3 (Lys56); 6: histone H3 (D1H2). (<b>B</b>) Gene expression analyses and quantification of the transcription factor REST/NRSF normalized to Ppia in naïve animals (<span class="html-italic">n</span> = 10) and at 1 (<span class="html-italic">n</span> = 9 animals), 3, 5, and 7 (each time point <span class="html-italic">n</span> = 10 animals) days after CCI. Data are expressed as mean ± SEM with individual values shown and <span class="html-italic">p</span> values were calculated by one-way ANOVA with post hoc Holm–Šidák correction (*** <span class="html-italic">p</span> &lt; 0.001; **** <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>VPA treatment does not affect mRNA expression of REST/NRSF target genes in the injured brain. Gene expression analyses by qPCR 7 days post-injury (dpi) relative to <span class="html-italic">Ppia</span>. (<b>A</b>) <span class="html-italic">Rest</span>/<span class="html-italic">Nrsf</span>; (<b>B</b>) <span class="html-italic">Bdnf</span>; (<b>C</b>) <span class="html-italic">Ntrk2</span>; (<b>D</b>) <span class="html-italic">Grin2a</span>; (<b>E</b>) <span class="html-italic">Gria1</span>; (<b>F</b>) <span class="html-italic">Slc12a5</span>; (<b>G</b>) <span class="html-italic">Chrm4</span>; (<b>H</b>) <span class="html-italic">Egr1</span>; (<b>I</b>) <span class="html-italic">Arc</span>; (<b>J</b>) <span class="html-italic">Cspg4</span>; (<b>K</b>) <span class="html-italic">Pdgfra</span>; (<b>L</b>) <span class="html-italic">Syn1</span>; (<b>M</b>) <span class="html-italic">Snap25</span>; (<b>N</b>) <span class="html-italic">L1cam</span>; (<b>O</b>) <span class="html-italic">Bax</span>; (<b>P</b>) <span class="html-italic">Bcl2</span>. CCI effects were observed, but VPA treatment had no effect on gene expression in sham or CCI groups. Data are expressed as mean ± SEM with individual values shown and <span class="html-italic">p</span> values were calculated by one-way ANOVA with post hoc Holm–Šidák correction (# <span class="html-italic">p</span> &lt; 0.05; ## <span class="html-italic">p</span> &lt; 0.01; ### <span class="html-italic">p</span> &lt; 0.001; #### <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Administration of VPA does not influence acute neurological deficits or brain lesion size at 7 dpi but attenuates structural damage in the hippocampus. (<b>A</b>) Body weight time course at post-traumatic day 1, 3, 5 and 7 in % of pre-surgery body weight [g], ns = not significantly different. (<b>B</b>) Neurological severity score (NSS) day 1, 3, 5 and 7. Sample size NSS/body weight: vehicle-controlled cortical impact (CCI): <span class="html-italic">n</span> = 11, VPA CCI: <span class="html-italic">n</span> = 12, vehicle sham: <span class="html-italic">n</span> = 8, VPA sham: <span class="html-italic">n</span> = 8. * <span class="html-italic">p</span> &lt; 0.05, **** <span class="html-italic">p</span> &lt; 0.0001 significantly different as indicated (CCI vs. sham animals). (<b>C</b>) Representative images of cresyl violet stained brain sections at 7 dpi from vehicle or VPA-treated mice. (<b>D</b>) Boxed regions from (<b>C</b>) shown in higher magnification with detail enlargement of the hippocampal granule cell layer (GCL) at 7 dpi in vehicle and VPA-treated mice. (<b>E</b>) Quantification of lesion volume and (<b>F</b>) GCL thickness (vehicle CCI: <span class="html-italic">n</span> = 11, VPA CCI: <span class="html-italic">n</span> = 12), * indicates significance levels between CCI groups and # between sham and corresponding CCI groups (** <span class="html-italic">p</span> &lt; 0.01, #### <span class="html-italic">p</span> &lt; 0.0001). All data points represent individual animals, and data are expressed as mean ± SEM, <span class="html-italic">p</span> values were calculated by two-way ANOVA with Holm–Šidák correction (<b>A</b>), Kruskal–Wallis test with Dunn’s correction (<b>B</b>), Mann–Whitney U Test (<b>E</b>) and one-way ANOVA with Holm–Šidák correction (<b>F</b>).</p>
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<p>VPA treatment does not affect BBB disruption and astrocyte activation at 7 dpi. (<b>A</b>) Quantification of IgG extravasation into brain tissue. Representative examples of immuno-dot blots from the lesioned hemisphere at 7 dpi and corresponding sham tissue are shown. (<b>B</b>) Gene expression analysis of the astrogliosis marker <span class="html-italic">GFAP</span> normalized to <span class="html-italic">Ppia</span>. (<b>C</b>) Quantification of GFAP protein levels and breakdown products (BDPs) relative to GAPDH. One sample from vehicle CCI and VPA CCI was excluded because the corresponding GAPDH reference band could not be correctly quantified. Anti-GFAP/anti-GAPDH immunoblots are shown. (<b>D</b>) Quantification of the anti-GFAP immunoreactivity (IR) area. Representative examples of immunofluorescence images are shown (scale: 50 µm). Data are expressed as mean ± SEM with individual values shown, <span class="html-italic">p</span> values were calculated by one-way ANOVA followed by comparison of pre-defined pairs (Vehicle versus VPA treatment) using <span class="html-italic">t</span>-test with α adjustment according to Holm–Šidák.</p>
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<p>Microglia activation after CCI is reduced by VPA. Gene expression analyses of the microglia markers <span class="html-italic">Aif1</span> (<b>A</b>), <span class="html-italic">Tspo</span> (<b>B</b>, 18 kDa translocator protein) and <span class="html-italic">Cd74</span> (<b>C</b>) normalized to <span class="html-italic">Ppia</span>. (<b>D</b>) Scheme showing the lesion core (orange) and the region of interest for the examination of microglial activation by anti-Iba1 immunohistochemistry (IHC, black box) medial to the lesion site. (<b>E</b>) Images of anti-Iba1 immunostaining showing perilesional microglia activation 7 dpi (scale 50 µm). (<b>F</b>) Quantification of the anti-Iba-1 immunoreactive area medial to the lesion site. Sample size: vehicle CCI: <span class="html-italic">n</span> = 11, VPA CCI: <span class="html-italic">n</span> = 12, vehicle sham: <span class="html-italic">n</span> = 8, VPA sham: <span class="html-italic">n</span> = 8. Data are expressed as mean ± SEM with individual values shown and <span class="html-italic">p</span> values (* <span class="html-italic">p</span> &lt; 0.05) were calculated by one-way ANOVA followed by comparison of the treatment-relevant groups (CCI-Vehicle versus CC-VPA) using <span class="html-italic">t</span>-test.</p>
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<p>VPA attenuates pro-inflammatory gene expression after CCI. Gene expression analyses of pro-inflammatory markers normalized to <span class="html-italic">Ppia</span>. Quantification of the pro-inflammatory cytokines <span class="html-italic">Il1b</span> (<b>A</b>), <span class="html-italic">Tnfa</span> (<b>B</b>), <span class="html-italic">Nos2</span> (<b>C</b>) and <span class="html-italic">Il6</span> (<b>D</b>). Sample size vehicle CCI: <span class="html-italic">n</span> = 11, VPA CCI: <span class="html-italic">n</span> = 12. Outliers as determined by Grubb’s test were removed from further analysis (<span class="html-italic">Il1b</span>, <span class="html-italic">Nos2</span>, <span class="html-italic">Il6</span>: 1 outlier in VPA sham, <span class="html-italic">Tnfa</span>: 2 outliers in VPA sham). Data are expressed as mean ± SEM with individual values shown and <span class="html-italic">p</span> values (* <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01) were calculated by one-way ANOVA followed by comparison of pre-defined pairs (Vehicle versus VPA treatment) using <span class="html-italic">t</span>-test with α adjustment according to Holm–Šidák.</p>
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<p>Lipidomic analysis of plasma samples 7 days after controlled cortical impact (CCI) or sham surgery in animals treated with vehicle or VPA (3 dpi 400 mg/kg VPA i.p.). (<b>A</b>) Volcano plot of CCI-Vehicle versus CCI-VPA. Lipids increased in the VPA group are on the right side of the x-axis (sham groups in <a href="#app1-cells-13-00734" class="html-app">Supplementary Figure S4A</a>). (<b>B</b>) Partial least square discriminant analysis (PLS-DA) component 1 versus component 2 scatter plot and 85% confidence ellipses. Two sham-VPA animals were excluded, which were identified as outliers by random forest analysis. (<b>C</b>) Variable importance plot (VIP) of PLS-DA component-1. (<b>D</b>) XY-scatter plots showing the association of lipid classes versus <span class="html-italic">Il1b</span> mRNA. To obtain a summary value of a lipid class, individual AUC/IS values of individual lipid species with different chain lengths and saturation of the respective class were summed. Associations with TNFα are shown in <a href="#app1-cells-13-00734" class="html-app">Supplementary Figure S6A</a>. Sample sizes: controlled cortical impact (CCI) vehicle <span class="html-italic">n</span> = 12, CCI VPA <span class="html-italic">n</span> = 12, sham vehicle <span class="html-italic">n</span> = 8, sham-VPA <span class="html-italic">n</span> = 8. Abbreviations of lipids: CAR, carnitines; CER, ceramides; LPC, lysophosphatidylcholine; PC, phosphatidylcholine; LPE, lysophosphatidylethanolamine; SE, steryl ester; SM, sphingomyelins; ST, sterols.</p>
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<p>Metabolomic analysis of polar metabolites in plasma samples 7 days after controlled cortical impact (CCI) or sham surgery in animals treated with vehicle or VPA (3 dpi 400 mg/kg VPA i.p.). (<b>A</b>) Volcano plot of CCI-Vehicle versus CCI-VPA. Metabolites that were increased in the VPA group are on the right side of the x-axis (sham groups in <a href="#app1-cells-13-00734" class="html-app">Supplementary Figure S4B</a>). (<b>B</b>) Partial least square discriminant analysis (PLS-DA) component 1 versus component 2 scatter plot and 85% confidence ellipses. One VPA animal each in the CCI and sham group were excluded, which were identified as outliers by random forest analysis. (<b>C</b>) Variable importance plot (VIP) of PLS-DA component-1. (<b>D</b>) XY scatter plots showing the association of key regulated metabolites versus <span class="html-italic">Il1b</span>. Associations with <span class="html-italic">Tnfa</span> are shown in <a href="#app1-cells-13-00734" class="html-app">Supplementary Figure S6B</a>. Sample sizes: controlled cortical impact (CCI) vehicle <span class="html-italic">n</span> = 12, CCI-VPA <span class="html-italic">n</span> = 12, sham vehicle <span class="html-italic">n</span> = 8, sham-VPA <span class="html-italic">n</span> = 8.</p>
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16 pages, 643 KiB  
Article
An LDPC-RS Concatenation and Decoding Scheme to Lower the Error Floor for FTN Signaling
by Honghao Shi, Zhiyong Luo and Congduan Li
Electronics 2024, 13(8), 1588; https://doi.org/10.3390/electronics13081588 - 22 Apr 2024
Cited by 1 | Viewed by 1063
Abstract
Faster-than-Nyquist (FTN) signaling has attracted increasing interest in the past two decades. However, when the fifth-generation (5G) communication low-density parity check (LDPC) code is applied to FTN signaling with low Bahl–Cock–Jelinek–Raviv (BCJR) states of detection and few turbo equalization iterations, an error floor [...] Read more.
Faster-than-Nyquist (FTN) signaling has attracted increasing interest in the past two decades. However, when the fifth-generation (5G) communication low-density parity check (LDPC) code is applied to FTN signaling with low Bahl–Cock–Jelinek–Raviv (BCJR) states of detection and few turbo equalization iterations, an error floor near 105 is found, which does not exist in the original LDPC used for orthogonal signaling. This can be eliminated through many detection and decoding iterations, but this is unacceptable considering the increase in latency and storage. To solve this problem, we propose an LDPC and Reed–Solomon (RS) concatenation code, shortening, and perturbation scheme to lower the error floor. We propose a parallel encoder architecture for RS component code and a concise algorithm to calculate its constant multiplier coefficients, leveraging a traditional serial encoder, which can also be used for other parallelisms, rates, and lengths. The simulation results show that the proposed concatenation and shortening scheme can lower the error floor to about 107. The proposed scheme has an error correction capability for coded FTN signaling and successfully lowers the error floor with the limitation of few turbo iterations and few BCJR states. Full article
(This article belongs to the Section Microwave and Wireless Communications)
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<p>FTN signaling with turbo equalization.</p>
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<p>BER vs. SNR of 5G LDPC (7680, 3840) code with three turbo iterations and 4-BCJR detection.</p>
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<p>Proposed LDPC-RS concatenation code. With concatenation and shortening, the code rate is 0.42.</p>
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<p>One example of BP decoding in a (6, 3) trapping set. Three variable nodes all have incorrect negative values, meanwhile relevant check nodes are weak and cannot provide error correction during BP iterations.</p>
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<p>Value distribution of <math display="inline"><semantics> <msubsup> <mi>L</mi> <mrow> <mi>i</mi> <mi>j</mi> </mrow> <mo>′</mo> </msubsup> </semantics></math>.</p>
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<p>Decoding of a (6, 3) trapping set without/with perturbation.</p>
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<p>Conventional serial RS (340, 320) encoder.</p>
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<p>Structure of a 4-parallel RS (340, 320) encoder.</p>
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<p>4-BCJR, BP max. itr. = 20, turbo eq. itr. = 3.</p>
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<p>4-BCJR, BP max. itr. = 50, turbo eq. itr. = 3.</p>
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14 pages, 1566 KiB  
Article
Long-Term Observation of SARS-CoV-2 Vaccination Response upon High Efficacy Treatment in Multiple Sclerosis—A Real-World Scenario
by Muriel Schraad, Stefan Runkel, Walter Hitzler, Maria Protopapa, Stefan Bittner, Timo Uphaus and Frauke Zipp
Vaccines 2024, 12(3), 296; https://doi.org/10.3390/vaccines12030296 - 12 Mar 2024
Viewed by 1631
Abstract
Immunomodulatory and immunosuppressive therapy is needed in people with a chronic neuroinflammatory disease of the central nervous system such as multiple sclerosis (MS). Therefore, MS requires monitoring for and preventing against infectious diseases like SARS-CoV-2. Vaccination and anti-viral treatments are, in particular, recommended [...] Read more.
Immunomodulatory and immunosuppressive therapy is needed in people with a chronic neuroinflammatory disease of the central nervous system such as multiple sclerosis (MS). Therefore, MS requires monitoring for and preventing against infectious diseases like SARS-CoV-2. Vaccination and anti-viral treatments are, in particular, recommended for elderly people and people at risk of a severe course of infection and of MS. Here, we asked whether repetitive infection or vaccination influenced responses upon receiving high efficacy treatments, namely sphingosine-1-phosphate receptor modulator (S1P) or anti-CD20 B cell antibody (anti-CD20) treatments. We performed a prospective real-world study of people with MS (pwMS) under S1P or anti-CD20 with repetitive exposure to the SARS-CoV-2 virus or vaccine. The measurement of anti-SARS-CoV-2 antibody titres was performed by two independent immunoassays after initial immunisation and after booster vaccination or infection. Other laboratory and clinical parameters were included in the analysis of influencing factors. As secondary outcomes, lymphocyte and immunoglobulin levels were observed longitudinally under intravenous and subcutaneous anti-CD20 treatment. In a long-term real-world cohort of 201 pwMS, we found that despite lymphopenia upon S1P drugs, the SARS-CoV-2 immunisation response increased both in selective and non-selective S1P (100% and 88% seroconversion, respectively), whereas those under anti-CD20 therapies merely exhibited a slight long-term increase in antibody titres (52% seroconversion). The latter was independent of immunoglobulin or total lymphocyte levels, which mostly remained stable. If the individual was immunised prior to therapy initiation, their levels of SARS-CoV-2 antibodies remained high under treatment. PwMS under non-selective S1P benefit from repetitive vaccination. The risk of an insufficient vaccination response mirrored by lower SARS-CoV-2 antibodies remains in pwMS receiving anti-CD20 treatment, even after repetitive exposure to the vaccine or virus. Due to the compromised vaccination response in CD20-depleting drugs, prompt antiviral treatment might be necessary. Full article
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<p>Schematic Overview. Study design with sample acquisition performed after initial immunisation and after booster vaccination or virus exposure. Within the timelines the proportion of seroconverted pwMS under sS1P (orange), nsS1P (green), and anti-CD20 (aCD20; lilac) are displayed. Anti-spike antibody levels (log10) under sS1P, nsS1P, and aCD20 after initial immunisation (blue) and after booster vaccination or infection (pink). Mean (dot) with standard deviation (bars). Lower limit of seroconversion (0.8 U/mL) displayed as its logarithm base (log10) through dotted line. Schematic display of modes of action of S1P and aCD20. S1P functionally antagonises S1P receptors and thus prevents egress of lymphocytes from lymph nodes. Anti-CD20 results in depletion of CD20-positive B cells. Reduced counts of lymphocytes and B cells in blood result in decreased autoinflammation in the central nervous system. Created with Biorender.</p>
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<p>Difference in anti-spike SARS-CoV-2 vaccination titre between pwMS treated with ns-S1P and s-S1P decreases with repetitive vaccination. (<b>A</b>) Antibody levels (log10) after initial immunisation are significantly lower in pwMS under ns-S1P than under s-S1P. (<b>B</b>) With a booster vaccination or infection titre reaches similar levels between S1P subgroups. (<b>C</b>) With booster vaccination no significant influences on titre were determined in a multiple regression model. Regression coefficient B (dot) with 95% confidence interval (95%CI, whisker). (<b>D</b>) Booster increases proportion of high-responder and decreases proportion of non-responder in both ns-S1P and s-S1P treated without reaching significance (ns-S1P n = 17, s-S1P n = 13). (<b>E</b>) Antibody levels (log10) are similar between pwMS that were vaccinated (vax) under s-S1P (n = 20) and those that were vaccinated (vax) prior to (n = 7) treatment. ns = not significant, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Booster response and longitudinal display of antibody levels prior and with anti- CD20 treatment. (<b>A</b>) Anti-spike SARS-CV-2 (log10) vaccination response under anti-CD20 (aCD20) after initial immunisation and after repetitive exposure to the virus (booster) shows a tendency to rise, without reaching significance. (<b>B</b>) With booster vaccination no significant influences on titre were determined in a multiple regression model. Regression coefficient B (dot) with 95% confidence interval (95%CI, whisker). (<b>C</b>) Distribution of titre divided into non-responder (&lt;0.8 U/mL, blue), responder (0.8–5000 U/mL, pink), and high responder (&gt;5000 U/mL, yellow) after initial immunisation and with booster. Responder increase with booster (Chi2 *** <span class="html-italic">p</span> &lt; 0.001, n = 52). (<b>D</b>) Longitudinal comparison of seral titre levels (log10) acquired prior to and after initiation of therapy with ofatumumab (OFA, n = 17) or ocrelizumab (OCR, n = 6) in pwMS immunized prior to therapy initiation. ns = not significant, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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18 pages, 3819 KiB  
Article
Evaluating the Effectiveness of Best Management Practices in Adapting the Impacts of Climate Change-Induced Urban Flooding
by Amrit Bhusal, Balbhadra Thakur, Ajay Kalra, Rohan Benjankar and Aruna Shrestha
Atmosphere 2024, 15(3), 281; https://doi.org/10.3390/atmos15030281 - 26 Feb 2024
Cited by 1 | Viewed by 2466
Abstract
Floods are amongst the most destructive and costly natural disasters impacting communities around the globe. The severity and reoccurrence of flooding events have been more common in recent years as a result of the changing climate and urbanization. Best Management Practices (BMPs) are [...] Read more.
Floods are amongst the most destructive and costly natural disasters impacting communities around the globe. The severity and reoccurrence of flooding events have been more common in recent years as a result of the changing climate and urbanization. Best Management Practices (BMPs) are commonly used flood management techniques that aim to alleviate flooding and its impacts by capturing surface runoff and promoting infiltration. Recent studies have examined the effectiveness of BMPs in countering the effects of flooding; however, the performance of such strategies still needs to be analyzed for possible future climate change. In this context, this research employs climate model-driven datasets from the North American Regional Climate Change Assessment Program to evaluate the effects of climate change on urban hydrology within a study region by calculating historical and projected 6 h 100-year storm depths. Finally, the climate-induced design storms are simulated in the PCSWMM model, and the three BMP options (i.e., porous pavement, infiltration trench, and green roof) are evaluated to alleviate the impact of flooding events. This study quantifies the impact of changing climate on flood severity based on future climate models. The results indicate that peak discharge and peak volume are projected to increase by a range of 5% to 43% and 8% to 94%, respectively. In addition, the results demonstrated that green roofs, Permeable Pavement, and infiltration trenches help to reduce peak discharge by up to 7%, 14%, and 15% and reduce flood volume by up to 19%, 24%, and 29%, respectively, thereby presenting a promising solution to address the challenges posed by climate change-induced flooding events. Full article
(This article belongs to the Special Issue The Impact of Climate Change on Water Resources)
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<p>Map showing the location and characteristics of East St. Louis watershed.</p>
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<p>The watershed characteristics.</p>
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<p>Graphical illustration of the methodology of the study.</p>
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<p>Future variability in storm depth for different models compared to historical values. Red dotted line indicates the NARR value, marker shapes indicate the model used, and labels indicate the delta change factor.</p>
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<p>Discharge hydrograph for 6 h—100 years return period dtorm for different climate model.</p>
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<p>Percentage increase in peak discharge and volume for climate variability scenarios.</p>
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<p>Effectiveness of BMP options under climate change scenarios. (<b>a</b>) Baseline scenario; (<b>b</b>) Timeslice CCSM; (<b>c</b>) WRFG-CGCM3; (<b>d</b>) HRM3-HADCM3.</p>
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21 pages, 2654 KiB  
Article
Differences in Brain Network Topology Based on Alcohol Use History in Adolescents
by Haley A. Kirse, Mohsen Bahrami, Robert G. Lyday, Sean L. Simpson, Hope Peterson-Sockwell, Jonathan H. Burdette and Paul J. Laurienti
Brain Sci. 2023, 13(12), 1676; https://doi.org/10.3390/brainsci13121676 - 5 Dec 2023
Viewed by 1509
Abstract
Approximately 6 million youth aged 12 to 20 consume alcohol monthly in the United States. The effect of alcohol consumption in adolescence on behavior and cognition is heavily researched; however, little is known about how alcohol consumption in adolescence may alter brain function, [...] Read more.
Approximately 6 million youth aged 12 to 20 consume alcohol monthly in the United States. The effect of alcohol consumption in adolescence on behavior and cognition is heavily researched; however, little is known about how alcohol consumption in adolescence may alter brain function, leading to long-term developmental detriments. In order to investigate differences in brain connectivity associated with alcohol use in adolescents, brain networks were constructed using resting-state functional magnetic resonance imaging data collected by the National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA) from 698 youth (12–21 years; 117 hazardous drinkers and 581 no/low drinkers). Analyses assessed differences in brain network topology based on alcohol consumption in eight predefined brain networks, as well as in whole-brain connectivity. Within the central executive network (CEN), basal ganglia network (BGN), and sensorimotor network (SMN), no/low drinkers demonstrated stronger and more frequent connections between highly globally efficient nodes, with fewer and weaker connections between highly clustered nodes. Inverse results were observed within the dorsal attention network (DAN), visual network (VN), and frontotemporal network (FTN), with no/low drinkers demonstrating weaker connections between nodes with high efficiency and increased frequency of clustered nodes compared to hazardous drinkers. Cross-sectional results from this study show clear organizational differences between adolescents with no/low or hazardous alcohol use, suggesting that aberrant connectivity in these brain networks is associated with risky drinking behaviors. Full article
(This article belongs to the Section Behavioral Neuroscience)
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Graphical abstract

Graphical abstract
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<p>These graphs illustrate the association between global efficiency, connection probability, and alcohol use history (no/low or hazardous) within the (<b>A</b>) basal ganglia network (BGN), (<b>B</b>) central executive network (CEN), (<b>C</b>) visual network (VN), and (<b>D</b>) fronto-temporal network (FTN) individually. Alcohol use history (AUH) is characterized as a binary variable. Both drinking groups, no/low drinkers (blue line) and hazardous drinkers (red line) are represented by a ‘best-fit’ slope to most clearly visualize group disparities in the relationship between GE and connection probability within each network. This figure demonstrates a positive global efficiency (GE)-connection probability for both drinking groups within the BGN, CEN, VN, and FTN. This relationship is significantly more positive within the BGN and CEN for no/low drinkers, whereas hazardous drinkers exhibit a stronger GE-connection probability relationship within the VN. There were no significant group AUH group differences in the GE-connection probability relationship within the FTN. The <span class="html-italic">x</span> and <span class="html-italic">y</span> axes are normalized using arbitrary units. Each Beta β estimate represents the slope of the corresponding line.</p>
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<p>These graphs illustrate the association between clustering coefficient, connection probability, and alcohol use history (no/low or hazardous) within the (<b>A</b>) basal ganglia network (BGN), (<b>B</b>) central executive network (CEN), (<b>C</b>) visual network (VN), and (<b>D</b>) fronto-temporal network (FTN) individually. Alcohol use history (AUH) is characterized as a binary variable. Both drinking groups, no/low drinkers (blue line) and hazardous drinkers (red line) are represented by a ‘best-fit’ slope to most clearly visualize group disparities in the relationship between GE and connection probability within each network. The clustering coefficient (CC)-connection probability relationship is negative in both groups in the BGN, CEN, and FTN and positive within the VN. No/low drinkers exhibit a significantly stronger negative relationship between CC and connection probability within the BGN and CEN and a stronger positive relationship between CC and connection probability within the VN. Within the FTN, no/low drinkers demonstrated a weaker negative CC-connection probability relationship compared to hazardous drinkers. The <span class="html-italic">x</span> and <span class="html-italic">y</span> axes are normalized using arbitrary units. Each Beta β estimate represents the slope of the corresponding line.</p>
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<p>These graphs illustrate the association between global efficiency (GE), connection strength, alcohol use history (no/low or hazardous) within the (<b>A</b>) basal ganglia network (BGN), (<b>B</b>) central executive network (CEN), (<b>C</b>) sensorimotor network (DAN), (<b>D</b>) dorsal attention network (DAN), (<b>E</b>) visual network (VN), and (<b>F</b>) fronto-temporal network (FTN) individually. Alcohol use history (AUH) is characterized as a binary variable. Both drinking groups, no/low drinkers (blue line) and hazardous drinkers (red line) are represented by a ‘best-fit’ slope to most clearly visualize group disparities in the relationship between GE and connection strength within each network. This figure illustrates an overall positive association between GE and connection strength. However, no/low drinkers show a stronger positive GE-connection strength relationship than hazardous drinkers within the BGN, CEN, and SMN but a weaker positive GE-connection strength relationship within the DAN, VN, and FTN. The <span class="html-italic">x</span> and <span class="html-italic">y</span> axes are normalized using arbitrary units. Each Beta β estimate represents the slope of the corresponding line.</p>
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<p>These graphs illustrate the association between clustering coefficient (CC), connection strength, alcohol use history (no/low or hazardous) within the (<b>A</b>) basal ganglia network (BGN), (<b>B</b>) central executive network (CEN), (<b>C</b>) sensorimotor network (DAN), (<b>D</b>) dorsal attention network (DAN), (<b>E</b>) visual network (VN), and (<b>F</b>) fronto-temporal network (FTN) individually. Alcohol use history (AUH) is characterized as a binary variable. Both drinking groups, no/low drinkers (blue line) and hazardous drinkers (red line) are represented by a ‘best-fit’ slope to most clearly visualize group disparities in the relationship between CC and connection strength within each network. This figure illustrates an overall positive association between CC and connection strength. However, no/low drinkers show a stronger positive CC-connection strength relationship than hazardous drinkers within the BGN, CEN, and SMN. Within the FTN, no/low drinkers had a stronger positive CC-connection strength relationship compared to hazardous drinkers. There were no significant group differences in the CC/connection strength relationship within the VN and DAN. The <span class="html-italic">x</span> and <span class="html-italic">y</span> axes are normalized using arbitrary units. Each Beta β estimate represents the slope of the corresponding line.</p>
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