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News: EuroBioC2023 abstract submission closing soon!
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News: EuroBioC2024 abstract submission is open!
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Spam: Small Business Directory Emerald Coast
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News: Bioconductor 3.20 is Released!
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News: RNAseq data analysis with R/Bioconductor (4-15 November)
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News: Announcing the GBCC2025 Logo Design Contest!
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News: List of Deprecated Packages for Bioc3.20
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10 weeks ago • updated 9 weeks ago shepherl 4.1k
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News: List of Deprecated Packages for Bioc3.19
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10 months ago • updated 10 weeks ago shepherl 4.1k
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News: Ensembl 113 has been released
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10 weeks ago Ensembl_Jorge • 0
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News: Bioconductor 3.20 Release Schedule
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News: Single-cell RNA-seq analysis with R/Bioconductor (online course)
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News: RNAseq data analysis with Bioconductor (online course)
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12 weeks ago • updated 8 weeks ago info ▴ 10
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News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
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News: Metabolomics with R/Bioconductor Online Course
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
3 months ago Maria Doyle ▴ 90
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
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News: BioCAsia 2024 Registration Now Open!
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News: EuroBioC Updates: Important Deadlines
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
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News: EuroBioC2024 Carpentries workshops Sep 2-3
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5 months ago Maria Doyle ▴ 90
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News: BioC2024 in-person registration closes soon (July 10)
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News: AnnotationHub and ExperimentHub Access Downtime
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
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7 months ago Maria Doyle ▴ 90
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News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
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9 months ago • updated 7 months ago shepherl 4.1k
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News: Ensembl 112 has been released.
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7 months ago Aleena ▴ 30
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News: Bioconductor 3.19 is Released!
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News: European Bioconductor Conference 2023 planning
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News: TIDES USA 2024
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News: List of Deprecated Packages for Bioc3.18
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News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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News: Bioconductor 3.19 Release Schedule
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10 months ago • updated 9 months ago shepherl 4.1k
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
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News: Join BOC Sciences at Drug Discovery Chemistry 2024
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News: Nominations for Bioconductor Awards 2024!
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10 months ago shepherl 4.1k
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News: BioC2024 abstract submission is open!
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News: Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
10 months ago info ▴ 10
523 results • Page 1 of 11
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Comment: Warning message when running limma with covariates by Chris ▴ 20
Hi @gordonsmyth. Happy New Year! Wishing you all the best in 2025. Thank you so much for your kind support!
Comment: Identifying potentially associated gene set to drug response using GSVA by coolmathforkids2 • 0
It is always helpful to see clear explanations and solutions for bioconductor related challenges. Posts like this make the community a valu…
Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0
Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …
Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
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Answer: Warning message when running limma with covariates
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
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