Activity for Timothy Mosbruger
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Timothy Mosbruger committed [r217]
Liftover
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Overall
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Added the ability to convert data between build...
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1. JBrowse support
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various fixes and improvements
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QueryController
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Sample Page
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Liftover
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Orthoretriever
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Clipboard
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Saved query should work in region upload
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Automate Analysis Creation
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Bulk Sample Name Upload
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Link in "reset password" email has wrong URL
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fixed in 210
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No help for "Exceeds these thresholds" search
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Fixed in 210
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Gene based searches
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Catch duplicate backend requests
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Only show edit/delete controls on hover
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Chosen Widget Bug
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Query Page
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Read lengths are calculated using the reported ...
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1. The analysis table can now be sorted by most...
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1. Samples and datatracks are now sortable by a...
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1. Projects ordered by name
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1. most recently entered samples are now on top
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1. dropped PARSED suffix that is automatically ...
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1. Fixed issue where normal FDRs were getting s...
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1. Fixed compression naming bug
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Fixed null value error when organism build is d...
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Help menus for all pages are finished. Needs t...
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Project Descripton
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All TF commands now report available diskspace ...
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Sam2USeq: Prepend chr to bed regions, if it isn...
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Query
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Datatracks
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1. Changed the layout of the submit data page. ...
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1. Added tooltips to gene searches (Alisha sugg...
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1. Fixed dissappearing radio button on submit page
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1. Select dropdowns will now display a scrollba...
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1. Query warnings were shared across users, so ...
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1) Users can now duplicate last entered analysi...
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1. Fixed sign-up form bug
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1. When a user updates their own information, t...
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1. Submission date now updates
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1. Dropped CSS scaling, it caused multiple disp...
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1. Reduced the size of the app. I didn't want ...
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1) Lots of new dashboard statistics. Admins get...
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1. Previous query is not loaded automatically, ...
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Fixed:
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Attempting to resolve first letter capitalizati...
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Removed trunk/src/main/webapp/app/submit/Filena...
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Removed trunk/src/main/webapp/app/submit/filena...
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1) Fixed add/modify labs to support email and p...
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remove branch created by tmaness
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1. VCF files are decompressed, recompressed wit...
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Fixed issue where support email was pointing to...
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1. Users can no longer upload datatracks or ana...
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1. Users can now delete sampleSources, samplePr...
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1. IGV sessions are now created with Genome obj...
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1. Button that duplicates last entered sample, ...
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1. Dashboard now reflects actual data
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Modified default fields for analysis creation
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Fixed chosen dropdown, more improvements to UI
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Fixed chosen widget in the newProjectWindow page
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1. Changed the gene annotation parser so that e...
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Fixed a bug that reported all Hugo names as NA
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1) Query result-based interval trees are only c...
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Lots of mods, mostly for the query page. Added...
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DefinedRegionDifferentialSeq: Changed rLog to r...
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1. TomatoFarmer: bug fixes and improvements
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1. Query results can be selected and exported t...
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1. Datatracks are now uploaded into Biominer in...
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Support for IGV added (still working with URLs ...
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1. Gene-based searches are now allowed
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Cleanup up submission page.
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Gene based searches
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Catch duplicate backend requests
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1. VCF files can now be parsed and searched. We...
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Only show edit/delete controls on hover
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1. Methylation data can now be parsed and searc...
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Only show edit/delete controls on hover
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Chosen Widget Bug
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1. RNASeq can be uploaded and searched.
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