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Steered molecular dynamics and mechanical functions of proteins

Curr Opin Struct Biol. 2001 Apr;11(2):224-30. doi: 10.1016/s0959-440x(00)00194-9.

Abstract

Atomic force microscopy of single molecules, steered molecular dynamics and the theory of stochastic processes have established a new field that investigates mechanical functions of proteins, such as ligand-receptor binding/unbinding and elasticity of muscle proteins during stretching. The combination of these methods yields information on the energy landscape that controls mechanical function and on the force-bearing components of proteins, as well as on the underlying physical mechanisms.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Avidin / chemistry
  • Avidin / metabolism
  • Biotin / chemistry
  • Biotin / metabolism
  • Computer Simulation
  • Connectin
  • Fibronectins / chemistry
  • Fibronectins / metabolism
  • Immunoglobulins / chemistry
  • Immunoglobulins / metabolism
  • Microscopy, Atomic Force / methods*
  • Muscle Proteins / chemistry
  • Muscle Proteins / metabolism
  • Protein Kinases / chemistry
  • Protein Kinases / metabolism
  • Protein Structure, Tertiary
  • Proteins / chemistry*
  • Proteins / metabolism*

Substances

  • Connectin
  • Fibronectins
  • Immunoglobulins
  • Muscle Proteins
  • Proteins
  • Avidin
  • Biotin
  • Protein Kinases