WO2024222898A1 - Double-stranded ribonucleic acid for inhibiting marc1 gene expression, and modifier, conjugate, and use thereof - Google Patents
Double-stranded ribonucleic acid for inhibiting marc1 gene expression, and modifier, conjugate, and use thereof Download PDFInfo
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- WO2024222898A1 WO2024222898A1 PCT/CN2024/090135 CN2024090135W WO2024222898A1 WO 2024222898 A1 WO2024222898 A1 WO 2024222898A1 CN 2024090135 W CN2024090135 W CN 2024090135W WO 2024222898 A1 WO2024222898 A1 WO 2024222898A1
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- Prior art keywords
- double
- sequence
- nucleotide
- antisense strand
- stranded rna
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Definitions
- the present disclosure belongs to the field of biomedicine. Specifically, the present disclosure relates to a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug, a pharmaceutical composition and uses for inhibiting MARC1 gene expression, and a method for inhibiting MARC1 gene expression in a cell.
- Nonalcoholic fatty liver disease is the most common chronic liver disease in the world. Its prevalence has doubled in the past 20 years and is now estimated to affect approximately 20-30% of the world's population.
- the pathology of NAFLD is a combination of factors.
- steatosis the accumulation of ectopic fat in the liver, called steatosis, triggers inflammation and liver cell damage, leading to a further disease called nonalcoholic steatohepatitis (NASH).
- NASH is defined as lipid accumulation with cell damage, inflammation, and varying degrees of scarring or fibrosis.
- Mitochondrial amidoxime reducing component 1 is a molybdenum-containing enzyme that reduces N-hydroxylated compounds and is associated with the outer mitochondrial membrane.
- a common missense variant in the MARC1 gene has recently been shown to protect the liver from fatty liver disease and cirrhosis of all causes. It was reported (Luukkonen P.K., Juuti A., Sammalkorpi H., et al. MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans.
- the study showed that by knocking out the expression of the MARC1 gene in patients, hyperglycemia, diabetes, metabolic syndrome, insulin resistance (insulin insensitivity), impaired glucose tolerance, high blood sugar levels, pulmonary hypertension and/or conditions caused by any of the above in patients can be treated.
- MARC1 gene by inhibiting the expression of MARC1 gene in patients, obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic fatty hepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome can be prevented and treated.
- ALT, AST, ALP elevated liver enzyme levels
- hypercholesterolemia hepatocellular carcinoma
- hypercholesterolemia and related cardiovascular diseases
- insulin resistance impaired glucose tolerance
- hyperglycemia type II diabetes and metabolic syndrome
- the present invention aims to provide siRNA compositions, which are effectively applied to RNA-induced silencing complex (RISC)-mediated cleavage of RNA transcripts of MARC1 genes, so as to selectively and effectively inhibit the expression of MARC1 genes and achieve the purpose of disease treatment.
- RISC RNA-induced silencing complex
- MARC1 inhibitors need to be developed for the treatment of MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, and other unidentified related conditions, pathologies or syndromes.
- MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, and other unidentified related conditions, pathologies or syndromes.
- the present disclosure aims to provide a series of double-stranded RNAs, double-stranded RNA modifications, double-stranded RNA conjugates, prodrugs and pharmaceutical compositions for inhibiting MARC1 gene expression, which can inhibit MARC1 gene expression and have important application prospects in clinical disease treatment.
- a double-stranded RNA comprising a sense strand and an antisense strand, wherein the sense strand is reverse complementary to the antisense strand and/or substantially reverse complementary to form a double-stranded region of the double-stranded RNA;
- the sense strand comprises a sequence A that differs by no more than 3 nucleotides from at least 15 consecutive nucleotides in the target sequence, and the antisense strand comprises a sequence B that differs by no more than 3 nucleotides from the reverse complementary sequence of at least 15 consecutive nucleotides in the target sequence;
- the target sequence is selected from a nucleotide sequence shown in any one of SEQ ID NOs: 1 to 9 and 812 to 817 and a sequence consisting of at least 15 consecutive nucleotides contained in any one of SEQ ID NOs: 1 to 9 and 812 to 817.
- nucleotide sequence of the positive strand is a sequence A which differs by no more than 1 nucleotide from a sequence consisting of 15 to 28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811 and 818 to 830, preferably 19 to 25 consecutive nucleotides, more preferably 19 to 23 consecutive nucleotides, and more preferably 19, 21 or 23 nucleotides.
- [5] The double-stranded ribonucleic acid according to any one of [1] to [4], wherein the antisense strand consists of 15-28 nucleotides, preferably 19-25 nucleotides, more preferably 19-23 nucleotides, and more preferably 19, 21 or 23 nucleotides.
- nucleotide sequence of the antisense strand is a sequence B having a difference of no more than 1 nucleotide compared to the reverse complementary sequence of a sequence consisting of 15 to 28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811 and 818 to 830, preferably 19 to 25 consecutive nucleotides, more preferably 19 to 23 consecutive nucleotides, and more preferably 19, 21 or 23 nucleotides.
- the double-stranded ribonucleic acid according to any one of [1] to [6], wherein the length of the double-stranded region is 15-25 nucleotides, preferably 19-23 nucleotides, more preferably 19-21 nucleotides, and more preferably 19, 21 or 23 nucleotides.
- the sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the sense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the antisense strand forms a blunt end; or,
- the sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the sense strand forms a blunt end; or,
- the sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand each have 1-2 protruding nucleotides extending out of the double-stranded region; or,
- the sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand both form blunt ends.
- the sense strand comprises the sense strand of any one of the siRNAs shown in Table 1 and Table 1-1 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA;
- the sense strand and the antisense strand are selected from the following combinations:
- the sense chain comprises the sense chain of any one of the siRNAs 262, 264 and 330 shown in Table 1 of the present invention
- the antisense chain comprises the antisense chain of the corresponding siRNA.
- each nucleotide in the sense strand is independently a modified nucleotide or an unmodified nucleotide
- each nucleotide in the antisense strand is independently is a modified nucleotide or an unmodified nucleotide.
- a modified double-stranded RNA which is a modified double-stranded RNA as described in any one of [1] to [14], wherein the modified double-stranded RNA comprises at least one of the following chemical modifications:
- the 3' end of sequence A in the sense strand of the double-stranded RNA is connected to a sequence D consisting of 1-2 nucleotides, preferably a sequence D consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence B in the antisense strand of the double-stranded RNA is connected to a sequence E consisting of 1-2 nucleotides, preferably a sequence E consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence A in the sense strand of the double-stranded RNA excludes 1-2 nucleotides to form sequence A';
- the sense strand and antisense strand of the double-stranded RNA modification are selected from the following sequence combinations:
- nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;
- nucleotide sequence of the sense strand is the sequence shown in sequence A
- nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E;
- nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;
- nucleotide sequence of the sense strand is the sequence shown by sequence A connected to sequence D
- nucleotide sequence of the antisense strand is the sequence shown by sequence B connected to sequence E;
- nucleotide sequence of the sense strand is the sequence shown in sequence A'
- nucleotide sequence of the antisense strand is the sequence shown in sequence B;
- nucleotide sequence of the sense strand is the sequence shown in sequence A’
- nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
- nucleotide derivative in the nucleotide derivative modification is selected from isonucleotides, LNA, ENA, cET, UNA or GNA.
- a double-stranded ribonucleic acid modified substance according to any one of [15] to [18], wherein, from the 5' end to the 3' end, the ribonucleotides at positions 7, 9, 10 and 11 in the sense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the sense strand are 2'-O-CH 3 modified ribonucleotides.
- the sense strand contains phosphorothioate diester bonds located at the positions shown below:
- the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;
- the ribonucleotides at positions 2, 6, 8, 9, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;
- the ribonucleotides at positions 2, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides
- the ribonucleotide at position 6 in the antisense strand is a ribonucleotide modified with the nucleotide derivative GNA
- the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides
- the ribonucleotides at positions 2, 6, 14 and 16 in the antisense chain are 2'-F modified ribonucleotides
- the ribonucleotide at position 7 in the antisense chain is a ribonucleotide modified with the nucleotide derivative GNA
- the ribonucleotides at the remaining positions in the antisense chain are 2'-O- CH3 modified ribonucleotides.
- [22] A double-stranded RNA modification according to any one of [15] to [21], wherein, in the direction from the 5’ end to the 3’ end, the nucleotide at the 5’ end of the antisense strand is not connected to a 5’ phosphate group or a 5’ phosphate derivative group, or the nucleotide at the 5’ end of the antisense strand is connected to a 5’ phosphate group or a 5’ phosphate derivative group.
- N 1 -N 23 are independently selected from ribonucleotides whose base is A, U, C or G,
- the capital letter T represents a deoxyribonucleotide with thymine as its base.
- the lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.
- the lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.
- N 1 -N 23 are independently selected from ribonucleotides whose base is A, U, C or G,
- the capital letter T represents a deoxyribonucleotide whose base is thymine.
- the lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.
- the lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.
- P1 means that the nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide.
- EVP means that the nucleotide adjacent to the right side of the letter combination is a 5'-trans vinylphosphonate nucleotide.
- GNA indicates that the adjacent ribonucleotide on the right is a ribonucleotide with GNA modification.
- double-stranded RNA modified substance according to any one of [15] to [26], wherein the double-stranded RNA modified substance is a siRNA modified substance for inhibiting the expression of the MARC1 gene.
- the sense strand comprises the sense strand of any one of the siRNA modifications shown in Table 2 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA modification;
- the sense strand and the antisense strand are selected from the following combinations:
- the sense chain comprises the sense chain of any one of the siRNAs siRNA 356-siRNA 363, siRNA 366-siRNA 373 and siRNA 433-siRNA 440 shown in Table 2 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
- a double-stranded RNA conjugate wherein the double-stranded RNA conjugate comprises the double-stranded RNA as described in any one of [1]-[14], or the double-stranded RNA modification as described in any one of [15]-[28]; and a conjugated group conjugated to the double-stranded RNA or the double-stranded RNA modification.
- the sense strand and the antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region;
- the sense strand and antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, while the 3' end of the antisense strand forms a blunt end.
- the double helix structure is double-stranded RNA or a modified double-stranded RNA.
- the sense strand and the antisense strand are selected from the following combinations:
- the sense strand comprises the sense strand of any one of the siRNA conjugates shown in Table 3 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA conjugate;
- the sense strand and the antisense strand are selected from the following combinations:
- the sense chain comprises the sense chain of any one of the siRNAs siRNA 451-siRNA 456, siRNA 462-siRNA 467 and siRNA 516-siRNA 521 shown in Table 3 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
- a pharmaceutical composition wherein the pharmaceutical composition comprises at least one of the following: a double-stranded RNA as described in any one of [1]-[14], a double-stranded RNA modification as described in any one of [15]-[28], a double-stranded RNA conjugate as described in any one of [29]-[36], or a prodrug as described in [37].
- composition according to [38] The pharmaceutical composition according to [38], wherein the pharmaceutical composition further comprises one or more pharmaceutically acceptable carriers and optionally one or more additional therapeutic agents.
- Obesity non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular disease, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes, and metabolic syndrome.
- a method for inhibiting the expression of MARC1 gene in cells in vivo or in vitro comprising contacting the cells with a double-stranded RNA according to any one of [1]-[14], a double-stranded RNA modification according to any one of [15]-[28], a double-stranded RNA conjugate according to any one of [29]-[36], a prodrug according to [37], or a pharmaceutical composition according to [38] or [39].
- the double-stranded RNA provided by the present disclosure can combine to form an RNA-induced silencing complex (RISC) in cells, cut the mRNA transcribed by the MARC1 gene, and efficiently and specifically inhibit the expression of the MARC1 gene.
- RISC RNA-induced silencing complex
- MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver
- the double-stranded RNA in the present disclosure is siRNA, which targets and degrades the transcription product mRNA of the MARC1 gene, exerts the effect of RNA interference, and inhibits the protein expression of the MARC1 gene. It is a MARC1 inhibitor with a high inhibition rate and good specificity.
- the present disclosure modifies double-stranded RNA to obtain modified double-stranded RNA, which has high stability and is suitable for use in in vivo disease treatment.
- the double-stranded RNA modification is a siRNA modification, which has high stability and good inhibitory activity.
- the present invention discloses a conjugate of double-stranded RNA or double-stranded RNA modified substance obtained by connecting a conjugation group to double-stranded RNA or double-stranded RNA modified substance, which can be used for efficient targeted delivery to tissues and cells, reducing the impact of double-stranded RNA or double-stranded RNA modified substance on non-targeted normal tissues and cells, and improving its safety in clinical disease treatment.
- the double-stranded RNA conjugate is a siRNA conjugate, which has organ or tissue targeting while maintaining the inhibitory activity and stability of siRNA, can reduce the impact on other tissues or organs and reduce the amount of siRNA molecules used, thereby achieving the purpose of reducing toxicity and reducing costs.
- the conjugated group in the present disclosure is a group (GalNAc) of the structure shown in Formula I, and GalNAc can be used for targeted delivery to liver cells and tissues to effectively inhibit the expression of MARC1 gene in the liver.
- the siRNA conjugate disclosed in the present disclosure has low toxicity and an excellent drug safety window.
- the word “a” or “an” or “the” may mean “one”, but may also mean “one or more”, “at least one” and “one or more than one”.
- MARC1 used in the context of this disclosure refers to the well-known gene and polypeptide.
- the MARC1 gene and MARC1 mRNA sequence are easily obtained using, for example, the following: Gene Bank (GenBank), database (UniProt), Online Mendelian Inheritance in Man (OMIM), etc.
- MARC1 gene may be a wild-type MARC1 gene, or a MARC1 gene mutant with sequence variation. Many sequence variations in the MARC1 gene have been identified and can be found in, for example, NCBIdbSNP and UniProt (see, for example, ncbi.nlm.nih.gov/snp).
- polypeptide and “protein” interchangeably refer to a string of at least two amino acid residues linked to each other by covalent bonds (e.g., peptide bonds), and may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide.
- a polypeptide may be linear or branched, it may contain modified amino acids, and it may be interrupted by non-amino acids.
- the term also includes polypeptides that have been modified (e.g., disulfide bond formation, glycosylation, lipidation, acetylation, phosphorylation, or any other manipulation, such as conjugation with a labeling component) amino acid polymers.
- target sequence refers to a continuous portion of the nucleotide sequence of an mRNA molecule formed during transcription of a target gene, including mRNA that is a product of RNA processing of a primary transcript.
- the target sequence is a nucleotide sequence consisting of no less than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 50, 80, 100 or 150 consecutively linked nucleosides.
- another shorter target sequence may be included in the target sequence.
- one or more shorter target sequences may be included in the target sequence. It should be considered that the two or more shorter target sequences included in the same target sequence have the same characteristics.
- the target gene is the MARC1 gene.
- the target portion of the sequence will be at least long enough to serve as a substrate for iRNA-directed cleavage at or near the nucleotide sequence portion of the mRNA molecule formed during transcription of the MARC1 gene.
- G", “C”, “A”, “T” and “U” generally represent the bases of guanine, cytosine, adenine, thymine and uracil, respectively, but it is also generally known in the art that “G”, “C”, “A”, “T” and “U” each generally represent nucleotides containing guanine, cytosine, adenine, thymine and uracil as bases, respectively, which is a common way to represent deoxyribonucleic acid sequences and/or ribonucleic acid sequences, so in the context of the present disclosure, the meanings represented by “G”, “C”, “A”, “T”, “U” include the above-mentioned various possible situations, however, it should be understood that the term “ribonucleotide” or “nucleotide” can also refer to a modified nucleotide (as further described below) or an alternative replacement part.
- guanine, cytosine, adenine and uracil can be replaced by other parts without substantially changing the base pairing properties of an oligonucleotide (including a nucleotide having such a replacement part).
- a nucleotide comprising inosine as its base can be base paired with a nucleotide comprising adenine, cytosine or uracil. Therefore, a nucleotide containing uracil, guanine or adenine can be replaced by a nucleotide containing, for example, inosine in the nucleotide sequence of the dsRNA characterized by the present invention.
- adenine and cytosine anywhere in the oligonucleotide can be replaced by guanine and uracil, respectively, to form a G-U wobble base pairing with the target mRNA. Sequences containing such replacement parts are suitable for the compositions and methods characterized by the present invention.
- RNAi agent RNA agent
- RNA interfering agent used in the context of this disclosure are used interchangeably herein and refer to siRNAs as defined herein and mediate targeted cleavage of RNA transcripts through the RNA induced silencing complex (RISC) pathway.
- RISC RNA induced silencing complex
- iRNAs direct sequence-specific degradation of mRNAs through a process known as RNA interference (RNAi).
- RNAiRNAs modulate, e.g., inhibit, expression of a target gene in a cell, such as a cell of a subject, such as a mammalian subject.
- double-stranded ribonucleic acid double-stranded RNA (dsRNA) molecule
- dsRNA double-stranded RNA
- dsRNA double-stranded RNA
- double-stranded ribonucleic acid triggers degradation of a target RNA, such as mRNA, through a post-transcriptional gene silencing mechanism (referred to herein as RNA interference or RNAi).
- dsRNA double-stranded ribonucleic acid
- RNAi post-transcriptional gene silencing mechanism
- each or both of the two strands may also include one or more non-ribonucleotides, e.g., deoxyribonucleotides and/or modified nucleotides.
- double-stranded RNA may include ribonucleotides, phosphate backbones, etc., with chemical modifications. These modifications may include all types of modifications disclosed herein or known in the art.
- nucleotide refers to a compound formed by a change in the position of the base on the ribose ring in a nucleotide, for example, a compound formed by a base not being attached to the 1'-position of the ribose ring but being attached to the 2'-position or 3'-position of the ribose ring.
- the double-stranded ribonucleic acid disclosed herein is a siRNA that interacts with an mRNA sequence transcribed from a target gene (e.g., an mRNA sequence transcribed from a MARC1 gene) to guide the cleavage of the target RNA.
- a target gene e.g., an mRNA sequence transcribed from a MARC1 gene
- Constrained, long double-stranded RNA introduced into cells is broken down into siRNA by a type III nuclease called Dicer (Sharp et al., Genes Dev. 2001, 15: 485).
- Dicer ribonuclease III-like enzyme processes dsRNA into 19-23 base pair short interfering RNAs with characteristic two-base 3' overhangs (Bernstein et al., (2001) Nature 409: 363). These siRNAs are then incorporated into RNA-induced silencing complexes (RISC), where one or more helicases unwind the siRNA duplex, making it possible for complementary antisense strands to guide target recognition (Nykanen et al., (2001) Cell 107: 309). Once bound to a suitable target mRNA, one or more nucleases within RISC cleave the target to induce silencing (Elbashir et al., (2001) Genes Dev. 15: 188).
- RISC RNA-induced silencing complexes
- overhanging nucleotides refers to one or more unpaired nucleotides that protrude from the duplex structure of a double-stranded ribonucleic acid when a 3' end of one strand of the dsRNA extends beyond the 5' end of the other strand, or vice versa.
- “Blunt end” or “blunt end” means that there are no unpaired nucleotides at that end of the double-stranded ribonucleic acid, i.e., no nucleotide overhang.
- a "blunt-ended" double-stranded ribonucleic acid is a dsRNA that is double-stranded throughout its length, i.e., has no nucleotide overhangs at either end of the molecule.
- antisense strand refers to a strand of a double-stranded RNA that is substantially complementary to a target sequence (e.g., derived from human MARC1 mRNA). Where the region of complementarity is not completely complementary to the target sequence, mismatches are most tolerated in the terminal regions, and if mismatches occur, they are typically within one or more regions of the termini, e.g., 5, 4, 3, 2, or 1 nucleotides of the 5' and/or 3' termini.
- sense strand refers to the nucleic acid strand of a double-stranded RNA that contains a region that is substantially complementary to a region of the antisense strand.
- the terms "complementary" or “reverse complement” are used interchangeably and have the meanings known to those skilled in the art, i.e., in a double-stranded nucleic acid molecule, the bases of one strand are paired with bases on the other strand in a complementary manner.
- the purine base adenine (A) is always paired with the pyrimidine base thymine (T) (or uracil (U) in RNA);
- the purine base guanine (G) is always paired with the pyrimidine base cytosine (C).
- Each base pair includes a purine and a pyrimidine.
- mismatch means in the art that in a double-stranded nucleic acid, the bases at corresponding positions are not paired in a complementary form.
- substantially reverse complementary means that there are no more than three base mismatches between the two nucleotide sequences involved, that is, there are 1, 2 or 3 base mismatches between the two nucleotide sequences involved; “completely complementary” means that there are no base mismatches between the two nucleotide sequences.
- inhibitor may be used interchangeably with “reduce,” “silence,” “downregulate,” “suppress,” and other similar terms, and includes any level of inhibition.
- the term "inhibiting the expression of a MARC1 gene” includes inhibiting the expression of any MARC1 gene (such as, for example, a mouse MARC1 gene, a rat MARC1 gene, a monkey MARC1 gene, or a human MARC1 gene) and variants (such as naturally occurring variants) or mutants of a MARC1 gene.
- the MARC1 gene can be a wild-type MARC1 gene, a mutant MARC1 gene, or a transgenic MARC1 gene in the context of a genetically manipulated cell, cell group, or organism.
- “Inhibiting MARC1 gene expression” includes any level of inhibition of MARC1 gene, such as at least partial inhibition of MARC1 gene expression, such as inhibition of at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99%.
- at least partial inhibition of MARC1 gene expression such as inhibition of at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%
- substituent independently refers to at least two groups (or rings) in the structure that have the same or similar value ranges.
- substituted may have the same or different meanings in certain circumstances. For example, if substituent X and substituent Y are each independently hydrogen, hydroxyl, alkyl or aryl, then when substituent X is hydrogen, substituent Y may be either hydrogen, or hydroxyl, alkyl or aryl; similarly, when substituent Y is hydrogen, substituent X may be either hydrogen, or hydroxyl, alkyl or aryl.
- alkyl includes straight chain, branched or cyclic saturated alkyl groups.
- alkyl groups include, but are not limited to, methyl, ethyl, propyl, cyclopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, cyclobutyl, n-pentyl, cyclohexyl and the like.
- C 1-6 in "C 1-6 alkyl” refers to a group having 1, 2, 3, 4, 5 or 6 carbon atoms arranged in a straight chain, branched or cyclic form.
- alkoxy herein refers to an alkyl group attached to the remainder of the molecule via an oxygen atom (-O-alkyl), wherein the alkyl group is as defined herein.
- alkoxy include methoxy, ethoxy, trifluoromethoxy, difluoromethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, n-pentoxy, and the like.
- treatment means that after suffering from a disease, a subject is exposed to (e.g., administered) double-stranded RNA, a double-stranded RNA modified substance, a double-stranded RNA conjugate, a prodrug, or a pharmaceutical composition, thereby alleviating the symptoms of the disease compared to when the subject is not exposed to the disease, and does not necessarily mean that the symptoms of the disease are completely suppressed.
- Suffering from a disease means that the body has symptoms of the disease.
- prevention means that before a subject develops a disease, by contacting (e.g., administering) the double-stranded RNA, double-stranded RNA modified product, double-stranded RNA conjugate, prodrug, or pharmaceutical composition of the present disclosure, the symptoms after the subject develops the disease are alleviated compared to when the subject does not develop the disease. It does not mean that the disease must be completely suppressed.
- the term "effective amount” refers to such an amount or dosage of the double-stranded RNA, double-stranded RNA modification, double-stranded RNA conjugate, prodrug or pharmaceutical composition of the present invention, which produces the desired effect in a patient in need of treatment or prevention after being administered to the patient in a single or multiple doses.
- the effective amount can be easily determined by the attending physician who is a person skilled in the art by considering a variety of factors such as the species of the mammal; its size, age and general health; the specific disease involved; the extent or severity of the disease; the response of the individual patient; the specific antibody administered; the mode of administration; the bioavailability characteristics of the administered formulation; the selected dosing regimen; and the use of any concomitant therapy.
- disease associated with abnormal expression of the MARC1 gene is a disease or disorder associated with the involvement of complement MARC1.
- disease associated with abnormal expression of the MARC1 gene includes diseases, disorders or conditions that will benefit from reducing the expression of MARC1 (i.e., "MARC1-related diseases”).
- the disease associated with abnormal expression of the MARC1 gene is selected from the group consisting of: obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome.
- ALT, AST, ALP elevated liver enzyme levels
- hypercholesterolemia and related cardiovascular diseases insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome.
- Emdin CA Haas ME
- Khera AV et al.
- Amissense variant in Mitochondrial Amidoxime Reducing Component 1 gene and protection against liver disease is not limited thereto: Emdin CA, Haas ME, Khera AV, et al.
- MARC1 and HNRNPUL1 Two Novel Players in Alcohol-related Liver Disease. Gastroenterology vol.159,4(2020):1231-1232.doi:10.1053/ j.gastro.2020.08.009; Rivera-Paredez, Berenice et al. "Association of MARC1, ADCY5, and BCO1 Variants with the Lipid Profile, Suggests an Additive Effect for Hypertriglyceridemia in Mexican Adult Men.” International journal of molecular sciences vol.23,19 11815.5Oct.2022,doi:10.3390/ijms231911815;Gao, Chuan et al.
- pharmaceutically acceptable excipient or “pharmaceutically acceptable carrier” refers to auxiliary materials widely used in the field of drug production.
- the main purpose of using excipients is to provide a pharmaceutical composition that is safe to use, stable in nature and/or has specific functionality, and also to provide a method so that after the drug is administered to the subject, the active ingredient can be dissolved at a desired rate, or to promote the effective absorption of the active ingredient in the subject receiving the drug.
- Pharmaceutically acceptable excipients can be inert fillers or functional ingredients that provide a certain function to the pharmaceutical composition (for example, stabilizing the overall pH value of the composition or preventing the degradation of the active ingredient in the composition).
- Non-limiting examples of pharmaceutically acceptable excipients include, but are not limited to, binders, suspending agents, emulsifiers, diluents (or fillers), granulating agents, adhesives, disintegrants, lubricants, anti-adhesive agents, glidants, wetting agents, gelling agents, absorption delay agents, dissolution inhibitors, enhancers, adsorbents, buffers, chelating agents, preservatives, colorants, flavoring agents, sweeteners, etc.
- compositions of the present disclosure can be prepared using any method known to those skilled in the art, such as conventional mixing, dissolving, granulating, emulsifying, pulverizing, encapsulating, embedding and/or lyophilizing processes.
- the route of administration can be varied or adjusted in any applicable manner to meet the requirements of the properties of the drug, the convenience of the patient and the medical staff, and other relevant factors.
- mammals include, but are not limited to, domestic animals (e.g., cows, sheep, cats, dogs and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats).
- domestic animals e.g., cows, sheep, cats, dogs and horses
- primates e.g., humans and non-human primates such as monkeys
- rabbits e.g., mice and rats.
- corresponding siRNA used in the context of the present disclosure refers to the same siRNA mentioned above.
- the sense chain comprises the sense chain of any one siRNA shown in Table 1 and Table 1-1 herein
- the antisense chain comprises the antisense chain of the corresponding siRNA
- the sense chain and antisense chain contained are from the same siRNA shown in Table 1 and Table 1-1 herein.
- the antisense chain comprises 5’-AGUAGGUCCUUUGUGUAGG-3’(SEQ ID NO:92).
- corresponding siRNA modifier refers to the same siRNA modifier mentioned above.
- the sense chain comprises the sense chain of any one siRNA modifier shown in Table 2 herein, and the antisense chain comprises the antisense chain of the corresponding siRNA modifier”, it means that the sense chain and antisense chain contained are from the same siRNA modifier shown in Table 2 herein.
- the term “corresponding siRNA conjugate” refers to the same siRNA conjugate mentioned above, for example, when it is mentioned that "the sense strand comprises the sense strand of any one siRNA conjugate shown in Table 3 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA conjugate”, it means that the sense strand and antisense strand contained are from the same siRNA conjugate shown in Table 3 herein.
- “comprising” includes the case of being composed of these sequences.
- the first aspect of the present disclosure provides a double-stranded ribonucleic acid (dsRNA) for inhibiting the expression of the MARC1 gene.
- dsRNA double-stranded ribonucleic acid
- One strand of the double-stranded ribonucleic acid is an antisense strand, which is complementary to the mRNA sequence formed during the expression of the target gene (i.e., the MARC1 gene) and is used to guide the cutting of the target mRNA (i.e., the transcription product of the MARC1 gene).
- the other sense strand in the double-stranded ribonucleic acid includes a double-stranded region that is partially complementary and completely complementary to the antisense strand to form the double-stranded ribonucleic acid.
- the double-stranded RNA is used as a substrate for the endonuclease (Dicer) and is cut into small fragments of dsRNA, i.e., siRNA.
- the double-stranded RNA is siRNA.
- siRNA assembles to form an RNA-induced silencing complex (RISC) RISC complex, cuts the target mRNA, and inhibits the expression of the MARC1 gene.
- RISC RNA-induced silencing complex
- siRNA that binds to the target mRNA is designed.
- the target sequence is selected from the nucleotide sequence shown in any one of SEQ ID NOs: 1 to 9 and 812 to 817.
- the target sequence is selected from the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811, and 818 to 830.
- the nucleotide sequence shown in SEQ ID NO:1 includes the nucleotide sequences shown in SEQ ID NO:10-12 and 799-801.
- the nucleotide sequence shown in SEQ ID NO:2 includes the nucleotide sequences shown in SEQ ID NO:13-16, 802 and 803.
- the nucleotide sequence shown in SEQ ID NO:3 includes the nucleotide sequences shown in SEQ ID NO:17-20 and 804.
- the nucleotide sequence shown in SEQ ID NO:4 includes the nucleotide sequences shown in SEQ ID NO:21-24, 805 and 806.
- the nucleotide sequence shown in SEQ ID NO:5 contains the nucleotide sequence shown in SEQ ID NO:25 to 28.
- the nucleotide sequence shown in SEQ ID NO:6 includes the nucleotide sequences shown in SEQ ID NO:29-30 and 807.
- the nucleotide sequence shown in SEQ ID NO:7 includes the nucleotide sequences shown in SEQ ID NO:31-32 and 808.
- the nucleotide sequence shown in SEQ ID NO:8 includes the nucleotide sequences shown in SEQ ID NO:33-35 and 809.
- the nucleotide sequence shown in SEQ ID NO:9 includes the nucleotide sequences shown in SEQ ID NO:36 ⁇ 37810, 811.
- the nucleotide sequence shown in SEQ ID NO:812 contains the nucleotide sequences shown in SEQ ID NO:818 and 819.
- the nucleotide sequence shown in SEQ ID NO:813 contains the nucleotide sequences shown in SEQ ID NO:820 and 821.
- the nucleotide sequence shown in SEQ ID NO:814 contains the nucleotide sequences shown in SEQ ID NO:822 and 823.
- the nucleotide sequence shown in SEQ ID NO:815 contains the nucleotide sequences shown in SEQ ID NO:824 and 825.
- the nucleotide sequence shown in SEQ ID NO:816 contains the nucleotide sequence shown in SEQ ID NO:826-828.
- the nucleotide sequence shown in SEQ ID NO:817 includes the nucleotide sequences shown in SEQ ID NO:829 and 830.
- the antisense strand comprises a sequence B that differs by no more than 3 nucleotides from the reverse complementary sequence of at least 15 consecutive nucleotides in the target sequence. Specifically, along the direction from the 5' end to the 3' end, the starting nucleotide is selected in the target sequence, and at least 15 nucleotides extending in the 3' direction including the starting nucleotide are used as the binding region of the siRNA.
- the antisense strand comprises the reverse complementary sequence of the nucleotide sequence corresponding to the binding region.
- the starting nucleotide can be a nucleotide at any position of the target sequence, as long as at least 15 consecutive nucleotides (including the nucleotide at the starting position) can be obtained by extending in the 3' direction of the target sequence based on the starting nucleotide.
- the nucleotide sequence of the antisense strand and the target sequence can be completely complementary or substantially complementary.
- the nucleotide sequence of the antisense strand and the target sequence are substantially complementary, there are no more than 3 mismatched bases in the nucleotide sequence of the antisense strand and the target sequence.
- the mismatched bases are 1, 2 or 3.
- the nucleotide sequence of the antisense strand and the target sequence are completely complementary, there are no mismatched bases in the nucleotide sequence of the antisense strand and the target sequence.
- the antisense strand consists of at least 15 nucleotides. In some embodiments, the antisense strand consists of 15-28 nucleotides. For example, the length of the antisense strand is 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 or 28 nucleotides.
- the antisense strand consists of 19-25 nucleotides, more preferably 19-23 nucleotides, most preferably 19, 21 or 23 nucleotides.
- the sequence B included in the antisense strand is identical to the reverse complementary sequence of a sequence consisting of at least 15 consecutive nucleotides on the target sequence.
- the sequence B included in the antisense strand is identical to the reverse complementary sequence of a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides.
- the sequence B comprised in the antisense strand differs by 1 nucleotide from the reverse complementary sequence of a sequence consisting of at least 15 consecutive nucleotides on the target sequence.
- the sequence B included in the antisense strand differs by 1 nucleotide from the reverse complementary sequence of a sequence consisting of 15-28 nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides.
- the different nucleotides are located at the 3' end of sequence B. In other specific embodiments, the different nucleotides are located at the 5' end of sequence B.
- the sense strand comprises a sequence A that differs by no more than 3 nucleotides from at least 15 consecutive nucleotides in the target sequence.
- the sense strand includes a region complementary to the antisense strand, and the nucleotide sequence of the sense strand is identical or substantially identical to the sequence of the region where the antisense strand binds to the target sequence.
- the nucleotide sequence of the sense strand is at least 15 consecutive nucleotides in the target sequence that bind to the antisense strand; or, the nucleotide sequence of the sense strand is compared with at least 15 consecutive nucleotides in the target sequence that bind to the antisense strand, and there are 1, 2, or 3 different nucleotides in the nucleotide sequence of the sense strand.
- the sense strand is composed of at least 15 nucleotides. In some embodiments, the sense strand is composed of 15-28 nucleotides. For example, the length of the sense strand is 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 or 28 nucleotides.
- the sense strand consists of 19-25 nucleotides, more preferably 19-23 nucleotides, most preferably 19, 21 or 23 nucleotides.
- the sequence A included in the sense strand is identical to a sequence consisting of at least 15 consecutive nucleotides in the target sequence.
- the sequence A included in the sense strand is identical to a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides on the target sequence.
- the sequence A included in the sense strand differs by 1 nucleotide from a sequence consisting of at least 15 consecutive nucleotides in the target sequence.
- the sequence A included in the sense strand differs by 1 nucleotide from a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides on the target sequence.
- the different nucleotides are located at the 3' end of sequence A. In other specific embodiments, the different nucleotides are located at the 5' end of sequence A.
- the length of the sense strand and the length of the antisense strand may be the same or different.
- the sense strand and the antisense strand are the same length, specifically, the sense strand/antisense strand length ratio is 15/15, 16/16, 17/17, 18/18, 19/19, 20/20, 21/21, 22/22, 23/23, 24/24, 25/25, 26/26, 27/27 or 28/28.
- the sense strand/antisense strand length ratio is 19/19, 20/20, 21/21, 22/22, 23/23, 24/24 or 25/25, more preferably 19/19, 20/20, 21/21, 22/22 or 23/23, and most preferably 19/19, 21/21 or 23/23.
- the sense strand is different from the antisense strand in length.
- the sense strand/antisense strand length ratio is 19/20, 19/21, 19/22, 19/23, 19/24, 19/25, 19/26, 20/19, 20/21, 20/22, 20/23, 20/24, 20/25, 20/26, 21/19, 21/20, 21/22, 21/23, 21/24, 21/25 , 21/26, 22/19, 22/20, 22/21, 22/23, 22/24, 22/25, 22/26, 23/19, 23/20, 23/21, 23/22, 23/24, 23/25 or 23/26, etc.; in some preferred embodiments, the length ratio of the sense strand/antisense strand is 19/21, 20/22 or 21/23.
- the sense strand and the antisense strand may be completely complementary or substantially complementary. When the two are substantially complementary, there are no more than 3 mismatched bases in the double-stranded region formed by the sense strand and the antisense strand.
- the sense strand, the antisense strand, or a combination thereof has protruding nucleotides extending out of the double-stranded region.
- the number of protruding nucleotides may be 1 or more, for example, 1 or 2.
- the protruding 1-2 nucleotides may be located at the 5' end, 3' end, or both ends of any antisense strand or sense strand, and each protruding nucleotide may be any type of nucleotide.
- the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' end of the sense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the antisense strand forms a blunt end.
- the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the sense strand forms a blunt end.
- the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand each have 1-2 protruding nucleotides extending out of the double-stranded region.
- the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand both form blunt ends.
- the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 38 to 91, 411 to 497, 499 to 502, and the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 92 to 145, 503 to 589, 591 to 594.
- the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 146 to 183
- the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 184 to 221.
- the double-stranded RNA is selected from any siRNA as shown in Table 1 or Table 1-1.
- the inhibition rate of the siRNA disclosed herein on the MARC1 gene is at least about 20%, and can be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values.
- the siRNA provided by the present disclosure has high specificity in binding to the target mRNA (MARC1 mRNA), has good silencing activity of the target mRNA, can significantly inhibit the expression of the MARC1 gene, and is used to treat MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, as well as other related diseases, pathologies or syndromes that have not yet been identified.
- MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and
- the present disclosure provides a siRNA composition comprising any one or a combination of two or more of the siRNAs shown in Table 1 or Table 1-1.
- each nucleotide of the sense strand is independently a modified nucleotide or an unmodified nucleotide. In some embodiments, each nucleotide of the antisense strand is independently a modified nucleotide or an unmodified nucleotide.
- any two nucleotides connected in the sense strand are connected by a phosphodiester bond or a phosphorothioate diester bond. In some embodiments, any two nucleotides connected in the antisense strand are connected by a phosphodiester bond or a phosphorothioate diester bond.
- the 5' terminal nucleotide of the antisense strand is not linked to a 5' phosphate group or a 5' phosphate-derived group, or is linked to a 5' phosphate group or a 5' phosphate-derived group.
- Base represents a base, such as A, U, G, C or T;
- R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
- the structure of the 5' phosphate group is:
- the structures of the 5' phosphate derivative group include but are not limited to: wait.
- the 5' terminal nucleotide of the antisense strand is connected to a 5' phosphate group or a 5' phosphate derivative group to form the following structure:
- Base represents a base, such as A, U, G, C or T;
- R' is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, 2'-fluoro (2'-F) modified nucleotides, 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-deoxyribonucleotides.
- 2'-fluoro (2'-F) modified nucleotides 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-deoxyribonucleotides.
- the second aspect of the present disclosure provides a double-stranded RNA modification.
- the double-stranded RNA modification is a siRNA modification.
- the siRNA modification can improve the stability of siRNA while maintaining a high MARC1 mRNA inhibitory activity.
- the double-stranded RNA modification comprises at least one modification of a nucleotide.
- the modification of the nucleotide is selected from at least one of the modification of the ribose group and the modification of the base.
- “modification of the nucleotide” refers to a nucleotide or a nucleotide derivative formed by replacing the 2' hydroxyl group of the ribose group of the nucleotide with other groups, or a nucleotide in which the base on the nucleotide is a modified base.
- the modification of the nucleotide does not cause the siRNA to inhibit gene expression. The function of the siRNA is significantly weakened or lost.
- the modified nucleotides disclosed in JK Watts, GF Deleavey, and MJ Damha, Chemically modified siRNA: tools and applications. Drug Discov Today, 2008, 13 (19-20): 842-55 can be selected.
- the stability of the siRNA can be improved by modifying the nucleotides, and its high inhibition efficiency on the MARC1 gene can be maintained.
- modified nucleotide has the structure shown below:
- Base represents a base, such as A, U, G, C or T.
- the hydroxyl group at the 2' position of the ribose group is substituted by R.
- the hydroxyl group at the 2' position of these ribose groups can be substituted by various groups known to those skilled in the art, for example, 2'-fluoro (2'-F) modified nucleotides, 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-deoxyribonucleotides.
- the 2'-alkoxy modified nucleotide is a 2'-methoxy (2'-OMe, 2'-O-CH 3 ) modified nucleotide, and the like.
- the modification of the nucleotide is the modification of the base.
- the modification of the base can be various types of modifications known to those skilled in the art.
- the modification of the base includes but is not limited to m 6 A, ⁇ , m 1 A, m 5 A, ms 2 i 6 A, i 6 A, m 3 C, m 5 C, ac 4 C, m 7 G, m 2,2 G, m 2 G, m 1 G, Q, m 5 U, mcm 5 U, ncm 5 U, ncm 5 Um, D, mcm 5 s 2 U, Inosine (I), hm 5 C, s 4 U, s 2 U, azobenzene, Cm, Um, Gm, t 6 A, yW, ms 2 t 6 A or its derivatives.
- a nucleotide derivative refers to a compound that can replace a nucleotide in a nucleic acid but has a structure different from adenine ribonucleotide, guanine ribonucleotide, cytosine ribonucleotide, uracil ribonucleotide or thymine deoxyribonucleotide.
- a nucleotide derivative can be an isonucleotide, a bridged nucleotide (BNA for short) or an acyclic nucleotide.
- BNA refers to a constrained or inaccessible nucleotide.
- BNA can contain a five-membered ring, a six-membered ring, or a seven-membered ring with a "fixed" C3'-endosugar condensed bridge structure.
- the bridge is usually incorporated into the 2'-, 4'-position of the ribose to provide a 2',4'-BNA nucleotide, such as LNA, ENA, cET, etc.
- LNA is shown in formula (1)
- ENA is shown in formula (2)
- cET is shown in formula (3):
- Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of a nucleotide, such as unlocked nucleic acid (UNA) or glycerol nucleic acid (GNA), wherein UNA is shown in formula (4) and GNA is shown in formula (5):
- UNA unlocked nucleic acid
- GNA glycerol nucleic acid
- R is selected from H, OH or alkoxy (O-alkyl).
- the nucleotide derivative modification refers to that the nucleotide in the nucleic acid is replaced by a nucleotide derivative.
- the nucleotide derivative is selected from isonucleotides, LNA, ENA, cET, UNA or GNA.
- nucleotides in the nucleic acid are replaced with isonucleotides, which are also referred to as isonucleoside modifications in the context of the present disclosure.
- isonucleoside modifications include incorporating isonucleosides at one or more sites of the sense strand and/or antisense strand of the siRNA to be modified to replace natural nucleosides for coupling at the corresponding positions.
- the isonucleoside modification adopts D-isonucleoside modification. In other embodiments, the isonucleoside modification adopts L-isonucleoside modification. In still other embodiments, the isonucleoside modification adopts D-isonucleoside modification and L-isonucleoside modification.
- the double-stranded RNA modification comprises a modification of the phosphodiester bond at at least one position.
- the modification of the phosphodiester bond refers to the replacement of at least one oxygen atom in the phosphodiester bond by a sulfur atom to form a thiophosphate diester bond.
- the thiophosphate diester bond can stabilize the double-stranded structure of the siRNA and maintain the specificity of base pairing. Exemplary, the thiophosphate diester bond structure is shown below:
- the double-stranded RNA modification comprises at least one of the following chemical modifications:
- the double-stranded RNA modification product is a siRNA modification product comprising at least one chemical modification among (1) to (4).
- sequence A in the sense strand and sequence B in the antisense strand complement each other to form a double-stranded region
- sequence B in the antisense strand complement each other to form a double-stranded region
- sequence A and sequence B are both blunt-ended;
- sequence A has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of sequence B forms a blunt end;
- sequence B has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of sequence A forms a blunt end;
- sequence A has 1-2 protruding nucleotides extending beyond the double-stranded region
- sequence B has 1-2 protruding nucleotides extending beyond the double-stranded region.
- nucleotide sequence of the sense strand is the sequence shown in sequence A
- nucleotide sequence of the antisense strand is the sequence shown in sequence B.
- nucleotide sequences of the sense strand and the antisense strand complement each other to form a double-stranded region
- 1-2 nucleotides are added to the 3' end of at least one of the sense strand and the antisense strand as protruding nucleotides.
- Column D 1-2 nucleotides connected to the 3' end of the antisense strand constitute sequence E.
- nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D
- nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E
- nucleotide sequence of the sense strand is the sequence shown in sequence A
- nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E
- nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D
- nucleotide sequence of the antisense strand is the sequence shown in sequence B.
- two deoxyribonucleotides are added to the 3' end of the sense strand as sequence D, and two deoxyribonucleotides (TT) are added to the 3' end of the antisense strand as sequence E.
- two deoxyribonucleotides are added only to the 3' end of the antisense strand as sequence E.
- two deoxyribonucleotides (TT) are added only to the 3' end of the sense strand as sequence D.
- nucleotide sequences of the sense strand and the antisense strand complement each other to form a double-stranded region
- a sequence D consisting of 1-2 nucleotides is added to the 3' end of the sense strand as the protruding nucleotide.
- the nucleotide sequence formed by connecting sequence A and sequence D is excluded. Accordingly, in the double-stranded RNA modified substance, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B.
- the nucleotide sequence of the sense strand is the sequence shown in sequence A
- the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
- sequence A when sequence A has 1-2 protruding nucleotides extending out of the double-stranded region at the 3' end of sequence A after complementing sequence B to form a double-stranded region, the protruding nucleotides at the 3' end of sequence A are excluded as the nucleotide sequence of the sense strand.
- sequence A' is called sequence excluding the protruding nucleotides at the 3' end.
- nucleotide sequence of the sense strand of the double-stranded RNA modification is the sequence shown in sequence A'
- nucleotide sequence of the antisense strand of the double-stranded RNA modification is the sequence shown in sequence B
- nucleotide sequence of the sense strand of the double-stranded RNA modification is the sequence shown in sequence A'
- nucleotide sequence of the antisense strand of the double-stranded RNA modification is the sequence shown in sequence B connected with sequence E.
- the sense strand of the siRNA modifier includes the following modifications: the ribonucleotides at positions 7, 9, 10 and 11 in the sense strand are 2'-fluoro-modified ribonucleotides; the ribonucleotides at other positions in the sense strand are 2'-methoxy-modified ribonucleotides.
- the 5' terminal nucleotide of the sense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group structure as shown in Formula X:
- Base represents a base, such as A, U, G, C or T;
- R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
- the structure of the 5' phosphate group is:
- the structures of the 5' phosphate derivative group include but are not limited to: wait.
- the sense strand of the siRNA modification comprises phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, between the second nucleotide and the third nucleotide starting from the 5' end, between the first nucleotide and the second nucleotide starting from the 3' end, and between the second and third nucleotides starting from the 3' end.
- the sense strand of the siRNA modification includes phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, and between the second nucleotide and the third nucleotide starting from the 5' end.
- the sense strand of the siRNA modification has a structure as shown in any one of (a 1 )-(a 3 ):
- N1 - N23 are independently selected from ribonucleotides whose base is A, U, C or G, the capital letter T represents a deoxyribonucleotide whose base is thymine, the lowercase letter m represents that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide, the lowercase letter f represents that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide, and -(s)- represents that two adjacent nucleotides are connected by a phosphorothioate diester bond.
- the sense strand of the siRNA modification has a structure as shown in any one of ( a4 )-( a5 ):
- N1 - N21 are independently selected from ribonucleotides whose base is A, U, C or G
- the lowercase letter m indicates that the adjacent ribonucleotide to the right of the letter m is a 2'-O- CH3- modified ribonucleotide
- the lowercase letter f indicates that the adjacent ribonucleotide to the left of the letter f is a 2'-F-modified ribonucleotide
- -(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.
- the antisense strand of the siRNA modifier includes the following modifications: the ribonucleotide at any odd position in the antisense strand is a 2'-methoxy-modified ribonucleotide, and the ribonucleotide at any even position in the antisense strand is a 2'-fluoro-modified ribonucleotide.
- the antisense strand of the siRNA modification comprises the following modifications: the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides.
- the antisense strand of the siRNA modification comprises the following modifications: the ribonucleotides at positions 2, 6, 8, 9, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides.
- the ribonucleotides at positions 2, 14 and 16 in the antisense chain are 2'-F modified ribonucleotides
- the ribonucleotide at position 6 in the antisense chain is a ribonucleotide modified with the nucleotide derivative GNA
- the ribonucleotides at the remaining positions in the antisense chain are 2'-O- CH3 modified ribonucleotides.
- the antisense strand of the siRNA modifier includes the following modifications: the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, the ribonucleotide at position 7 in the antisense strand is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O- CH3 modified ribonucleotides.
- the antisense strand of the siRNA modification comprises phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, between the second nucleotide and the third nucleotide starting from the 5' end, between the first nucleotide and the second nucleotide starting from the 3' end, and between the second and third nucleotides starting from the 3' end.
- the nucleotide at the 5' end of the antisense strand is not linked to a 5' phosphate group or a 5' phosphate-derivative group, or is linked to a 5' phosphate group or a 5' phosphate-derivative group.
- Base represents a base, such as A, U, G, C or T;
- R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
- the structure of the 5' phosphate group is:
- the structures of the 5' phosphate derivative group include but are not limited to: wait.
- the antisense strand of the siRNA modification has a structure as shown in any one of (b 1 ) to (b 27 ):
- N1 - N23 are independently selected from ribonucleotides whose base is A, U, C or G; the capital letter T represents a deoxyribonucleotide whose base is thymine; the lowercase letter m represents that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide; the lowercase letter f represents that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide; P1 represents that a nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide; EVP represents that a nucleotide adjacent to the right of the letter combination is a 5'-trans-vinylphosphonate nucleotide; -(s)- represents that two adjacent nucleotides are connected by a phosphorothioate diester bond; and [
- the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 222 to 283 and 595 to 650
- the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 284 to 393, 651 to 748, 788 to 798, 498 and 590.
- the double-stranded RNA modifications include, but are not limited to, the siRNA modifications shown in Table 2.
- the inhibition rate of the siRNA modification disclosed herein on the MARC1 gene is at least about 20%, and may be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values.
- the IC 50 of the siRNA modification disclosed herein on the MARC1 gene is less than about 0.4 nM, and may be less than About 0.3, about 0.2, about 0.1, about 0.09, about 0.08, about 0.07, about 0.06, about 0.05, about 0.04, about 0.03, about 0.02, about 0.01 nM.
- the third aspect of the present disclosure provides a double-stranded RNA conjugate, which is obtained by conjugating the double-stranded RNA provided by the first aspect of the present disclosure or the double-stranded RNA modification provided by the second aspect with a conjugation group.
- the sense strand and the antisense strand of the double-stranded RNA conjugate form a double-stranded region of the double-stranded RNA conjugate, and a blunt end is formed at the 3' end of the sense strand of the double-stranded RNA conjugate.
- the 3' end of the sense strand of the double-stranded RNA conjugate forms a blunt end
- the 3' end of the antisense strand of the double-stranded RNA conjugate has 1-2 protruding nucleotides extending out of the double-stranded region.
- the 3' end of the sense strand of the double-stranded RNA conjugate forms a blunt end
- the 3' end of the antisense strand of the double-stranded RNA conjugate forms a blunt end.
- the double-stranded RNA conjugate is obtained by conjugating a double-stranded RNA modification with a conjugation group, wherein the sense strand and the antisense strand of the double-stranded RNA modification are complementary to form a double-stranded region of the double-stranded RNA modification, and the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end, and the conjugation group is conjugated with the 3' end of the sense strand with the blunt end to form a double-stranded RNA conjugate.
- the sense strand of the double-stranded RNA modification is the sequence shown in sequence A
- the antisense strand is the sequence shown in sequence B connected to sequence E.
- the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end
- the 3' end of the sense strand of the double-stranded RNA modification is connected to a conjugated group to form a double-stranded RNA conjugate.
- the sense strand of the double-stranded RNA modification is the sequence shown in sequence A
- the antisense strand is the sequence shown in sequence B.
- the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end
- the 3' end of the sense strand of the double-stranded RNA modification is connected to a conjugated group to form a double-stranded RNA conjugate.
- the sense strand of the double-stranded RNA modification is a sequence A connected to a sequence D
- the antisense strand is a sequence B connected to a sequence E.
- the 3' end of the sense strand of the double-stranded RNA modification has a sequence D consisting of 1-2 nucleotides protruding, and after excluding the sequence D at the 3' end of the sense strand in the double-stranded RNA modification, a conjugation group is connected to the 3' end of sequence A to form a double-stranded RNA conjugate.
- the sense strand of the double-stranded RNA modification is the sequence shown by sequence A connected to sequence D
- the antisense strand is the sequence shown by sequence B.
- the 3' end of the sense strand of the double-stranded RNA modification has a sequence D consisting of protruding 1-2 nucleotides, and after excluding the sequence D at the 3' end of the sense strand in the double-stranded RNA modification, a conjugation group is connected to the 3' end of sequence A to form a double-stranded RNA conjugate.
- the sense strand of the double-stranded RNA modification is the sequence shown in sequence A
- the antisense strand is the sequence shown in sequence B connected to sequence E.
- the 3' end of sequence A has a protruding nucleotide extending out of the double-stranded region
- the sequence after excluding the protruding nucleotide at the 3' end of sequence A (also known as sequence A') is used as the nucleotide sequence for connecting the conjugated group. Therefore, the nucleotide sequence of the sense strand of the double-stranded RNA conjugate is the sequence shown in sequence A'
- the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
- the sense strand of the double-stranded RNA modification is the sequence shown in sequence A
- the antisense strand is the sequence shown in sequence B.
- the 3' end of sequence A has a protruding nucleotide extending out of the double-stranded region
- the sequence after excluding the protruding nucleotide at the 3' end of sequence A (also known as sequence A') is used as the nucleotide sequence for connecting the conjugated group. Therefore, the nucleotide sequence of the sense strand of the double-stranded RNA conjugate is the sequence shown in sequence A'
- the nucleotide sequence of the antisense strand is the sequence shown in sequence B.
- the 3' end of the sense strand originally has a protruding nucleotide -smUsmA extending out of the double-stranded region.
- the mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmA blunt-end sequence formed after the protruding -smUsmA nucleotide at the 3' end of the sense strand is excluded is used as the nucleotide sequence for connecting the L96 conjugation group (i.e., L96 is connected through a phosphodiester bond after the sequence is synthesized to the blunt end).
- the sequence of the siRNA conjugate is: the sense strand is mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmAL96 (SEQ ID NO: 756), and the antisense strand is EVPmUsCfsmUmGmAAfmAmUmCmAmCmUmGAfmAUfmCmAmCsmUsmU (SEQ ID NO: 671).
- the sense strand of the double-stranded RNA conjugate has a structure as shown in any one of (d 1 )-(d 2 ):
- N1 - N21 are independently selected from ribonucleotides whose bases are A, U, C or G
- the lowercase letter m indicates that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3 modified ribonucleotide
- the lowercase letter f indicates that a ribonucleotide adjacent to the left of the letter f is a 2'-F modified ribonucleotide
- -(s)- indicates that two adjacent nucleotides are connected by a phosphorothioate diester bond.
- L96 is the conjugate group GalNAc shown in formula I.
- the antisense strand of the double-stranded RNA conjugate has a structure as shown in any one of (b 1 )-(b 27 ):
- N1 - N23 are independently selected from ribonucleotides whose bases are A, U, C or G; capital letter T indicates a deoxyribonucleotide whose base is thymine; lowercase letter m indicates that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide; lowercase letter f indicates that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide; P1 indicates that a nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide; EVP indicates that a nucleotide adjacent to the right of the letter combination is a 5'-trans-vinylphosphonate nucleotide; -(s)- indicates that two adjacent nucleotides are connected by a phosphorothioate diester bond; and [GNA]
- the double-stranded RNA conjugate is a siRNA conjugate, wherein the siRNA molecule connected to the conjugation group in the siRNA conjugate can be an unmodified siRNA, or a siRNA modification.
- the siRNA molecule modified with the conjugation group has good tissue and organ targeting and the ability to promote cell endocytosis while maintaining high inhibitory activity and stability, which can reduce the impact on other tissues or organs and reduce the amount of siRNA molecules used, thereby achieving the purpose of reducing toxicity and reducing costs.
- any one of the siRNA molecules shown in Table 1 or Table 1-1 or Table 2 is selected to be connected to the conjugation group to obtain a double-stranded RNA conjugate.
- the conjugation site of siRNA and conjugated group can be at the 3' end or 5' end of the siRNA sense strand, or at the 5' end of the antisense strand, or in the internal sequence of siRNA. In some embodiments, the conjugation site of siRNA and conjugated group is at the 3' end of the siRNA sense strand.
- the conjugate group can be connected to the phosphate group, 2'-hydroxyl group or base of the nucleotide. In some embodiments, the conjugate group can also be connected to the 3'-hydroxyl group, in which case the nucleotides are connected by a 2',5'-phosphodiester bond.
- the conjugate group is usually connected to the phosphate group of the nucleotide; when the conjugate group is connected to the internal sequence of the siRNA, the conjugate group is usually connected to the ribose sugar ring or the base.
- connection methods can be referred to in the literature: Muthiah Manoharan et.al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5):1181-7.
- the conjugated group can be a ligand conventionally used in the field of siRNA administration.
- the conjugated group can be selected from one or more of the ligands formed by the following targeting molecules or their derivatives: lipophilic molecules, such as cholesterol, bile acid, vitamins (such as vitamin E), lipid molecules of different chain lengths; polymers, such as polyethylene glycol; polypeptides, such as membrane-permeable peptides; aptamers; antibodies; quantum dots; carbohydrates, such as lactose, polylactose, mannose, galactose, N-acetylgalactosamine (GalNAc); folic acid (folate); receptor ligands expressed by hepatocytes, such as asialoglycoproteins, asialosugar residues, lipoproteins (such as high-density lipoproteins, low-density lipoproteins, etc.), glucagon, neurotransmitters (such as adrenaline), growth factors
- lipophilic molecules such
- the conjugated group has any of the following structures:
- GalNAc has liver targeting property and can deliver siRNA molecules to liver tissue with high specificity, thereby specifically inhibiting the high expression of MARC1 gene in the liver.
- GalNAc is conjugated to the 3' end of the sense strand via a phosphodiester bond to obtain a siRNA conjugate with the following structure:
- the double helix structure is unmodified siRNA or siRNA modification.
- the double-stranded ribonucleic acid conjugates include, but are not limited to, siRNA conjugates as shown in Table 3.
- the inhibition rate of the siRNA conjugates disclosed herein on the MARC1 gene is at least about 20%, and may be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values.
- the fourth aspect of the present disclosure provides a prodrug.
- the double-stranded RNA described in the first aspect of the present disclosure, the double-stranded RNA modified product described in the second aspect, and the double-stranded RNA conjugate described in the third aspect can also exist in the form of a prodrug, and the prodrug can be converted into the double-stranded RNA, double-stranded RNA modified product, and double-stranded RNA conjugate of the present disclosure in vivo or in vitro.
- prodrug refers to a compound that exerts its pharmacological effect after transformation in the organism.
- M6 is a prodrug of M2.
- the difference between the modification of M2 and M6 is whether there is P1 at the 5' end of the antisense strand.
- M6 without P1 will be phosphorylated in the body to become the M2 sequence with P1, thereby exerting its effect.
- the relationship between M7 and M3 is the same. Therefore, siRNA in this article includes its corresponding prodrug.
- the fifth aspect of the present disclosure provides a pharmaceutical composition, comprising one or more of the double-stranded RNA described in the first aspect, the double-stranded RNA modification described in the second aspect, the double-stranded RNA conjugate described in the third aspect, and the prodrug described in the fourth aspect.
- the pharmaceutical composition contains siRNA or prodrug as described above as an active ingredient and a pharmaceutically acceptable carrier.
- the pharmaceutical composition also contains one or more additional therapeutic agents, such as therapeutic agents that are beneficial to the prevention or treatment of diseases, disorders or symptoms mediated at least in part by MARC1 gene expression.
- additional therapeutic agents such as therapeutic agents that are beneficial to the prevention or treatment of diseases, disorders or symptoms mediated at least in part by MARC1 gene expression.
- the purpose of using the pharmaceutical composition is to promote administration to an organism, which is conducive to the absorption of the active ingredient and thus exerts biological activity.
- the pharmaceutical composition of the present disclosure can be administered in any form, including injection (intra-arterial, intravenous, intramuscular, intraperitoneal, subcutaneous), mucosal, oral (oral solid preparations, oral liquid preparations), rectal, inhalation, implantation, topical (e.g., ophthalmic) administration, etc.
- oral solid preparations include, but are not limited to, powders, capsules, lozenges, granules, tablets, etc.
- Non-limiting examples of liquid preparations for oral or mucosal administration include, but are not limited to, suspensions, tinctures, elixirs, solutions, etc.
- Non-limiting examples of topical preparations include, but are not limited to, emulsions, gels, ointments, creams, patches, pastes, foams, lotions, drops or serum preparations.
- Non-limiting examples of parenteral preparations include, but are not limited to, solutions for injection, dry powders for injection, suspensions for injection, emulsions for injection, etc.
- the pharmaceutical compositions of the present disclosure can also be prepared into controlled-release or delayed-release dosage forms (eg, liposomes or microspheres).
- the route of administration can be varied or adjusted in any applicable manner to meet the requirements of the properties of the drug, the convenience of the patient and the medical staff, and other relevant factors.
- the sixth aspect of the present disclosure provides at least one of the following uses of double-stranded RNA, double-stranded RNA modifications, double-stranded RNA conjugates, prodrugs, and pharmaceutical compositions:
- the present disclosure further provides the use of siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates) or prodrugs or pharmaceutical compositions thereof in at least one of the above (1)-(3).
- abnormal expression of MARC1 gene causes one or more of the following diseases related to abnormal expression of MARC1 gene: obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic fatty hepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, etc.
- diseases related to abnormal expression of MARC1 gene include obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic fatty hepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, etc.
- the siRNA molecule causes the expression of the MARC1 gene to be inhibited by at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98% or at least about 99%, thereby achieving the treatment of diseases related to abnormal expression of the MARC1 gene.
- the present disclosure provides a method for inhibiting MARC1 gene expression in a cell, comprising contacting a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug or a pharmaceutical composition with the cell.
- the method for inhibiting the expression of MARC1 gene in cells is to introduce siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions into cells.
- the cell is an in vivo cell or an in vitro cell. In some specific embodiments, the cell is in a subject.
- the present disclosure provides a method for preventing or treating a disease, comprising administering a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug, or a pharmaceutical composition to a subject or patient.
- the method for preventing or treating a disease is to administer siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions to a subject or patient.
- siRNA molecules including unmodified siRNA, siRNA modifications, siRNA conjugates
- prodrugs or pharmaceutical compositions
- subject includes either a human or a non-human animal, preferably a vertebrate, and more preferably a mammal.
- the subject may include a transgenic organism. Most preferably, the subject is a human. Further, the subject has at least one of the following characteristics:
- the dosage of the siRNA molecules can be determined according to the patient's weight, age, gender, severity of the disease, etc. Based on the amount of double-stranded ribonucleic acid contained therein, the dosage of the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions disclosed herein is about 1-300 mg/kg body weight.
- the frequency of administration can be daily, weekly, every two weeks, every three weeks, every 1 month, every 2 months, every 3 months, every 4 months, every 5 months, every 6 months, every 7 months, every 8 months, every 9 months, every 10 months, every 11 months or yearly, once or more.
- the total number of times the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions of the present disclosure are administered can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 or 50.
- the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions of the present disclosure can be administered about 1, 2, 3, 4 times.
- the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs, pharmaceutical compositions, and optionally other therapeutic agents disclosed herein may be packaged in a kit, wherein the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs, pharmaceutically acceptable carriers, and optionally other therapeutic agents may be provided in liquid form or dry form.
- the kit Instructions are included to describe how to mix the siRNA molecule or prodrug with a pharmaceutically acceptable carrier or other ingredients.
- each of the capital letters "G”, “C”, “A”, “T” and “U” generally represents a nucleotide containing guanine, cytosine, adenine, thymine and uracil as a base, respectively;
- mA, mU, mC, mG represent 2-methoxy modified nucleotides;
- Af, Gf, Cf, Uf represent 2-fluoro modified nucleotides;
- the lowercase letter s indicates that the two nucleotides adjacent to the letter s are connected by a thiophosphate diester bond;
- P1: indicates that the nucleotide adjacent to the right of P1 is a 5'-phosphate nucleotide;
- EVP indicates that the nucleotide adjacent to the right is a 5'-trans vinylphosphonate nucleotide;
- [GNA] indicates that the ribonucleotide adjacent to the right is a ribonucleotide modified
- L96 is the conjugate group GalNAc shown in Formula I.
- Base represents a base, such as A, U, G, C or T;
- R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
- Table 1-1 Table 2 and Table 3, the 3' position of the 3' terminal nucleotide of the sense strand and the modified sense strand, and the 3' terminal nucleotide of the antisense strand and the modified antisense strand is a hydroxyl group.
- the experimental techniques and experimental methods used in this example are all conventional technical methods unless otherwise specified.
- the experimental methods in the following examples that do not specify specific conditions are usually carried out according to conventional conditions such as those described in Sambrook et al., Molecular Cloning: A Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the conditions recommended by the manufacturer.
- the materials, reagents, etc. used in the examples can be obtained through regular commercial channels unless otherwise specified.
- siRNA, siRNA modifications, and siRNA conjugates involved in the following examples were synthesized by Tianlin Biotechnology (Shanghai) Co., Ltd.
- the cells and reagents used in the examples are shown in Table 4:
- MARC1 siRNAs Based on the human MARC1 gene mRNA sequence, multiple pairs of MARC1 siRNAs were designed at different sites. All the designed single siRNAs can target all transcripts of the target gene (as shown in Table 5). These multiple pairs of siRNAs have the lowest homology with all other non-target gene sequences after sequence similarity software alignment.
- the target sequence used to design siRNA is shown below.
- the target sequence is derived from the mRNA sequence of the MARC1 gene (see NM_022746.4).
- nucleoside monomers are connected one by one from 3'-5' direction according to the order of nucleotide arrangement.
- Each connection of a nucleoside monomer includes four steps of deprotection, coupling, oxidation or sulfidation, and capping.
- steps of deprotection, coupling, oxidation or sulfidation, and capping are included.
- phosphate when used to connect two nucleotides, when the latter nucleoside monomer is connected, four steps of deprotection, coupling, oxidation, and capping are included.
- thiophosphate is used to connect two nucleotides, when the latter nucleoside monomer is connected, four steps of deprotection, coupling, sulfidation, and capping are included.
- the present invention selects nucleotide monomers according to the target sequence of synthesis, and the selected nucleotide monomers are nucleotide monomers commonly used by those skilled in the art.
- the nucleotide monomers for synthesizing A can be, but are not limited to, adenosine-3-phosphate. It should be understood that these monomers, when present in oligonucleotides, are interconnected by 5'-3' phosphodiester bonds or 5'-3' thiophosphate groups.
- the 3' position of the last nucleotide in the 5' to 3' direction is a hydroxyl group, it is achieved according to conventional means of the art.
- the nucleoside monomer was provided in a 0.1 M acetonitrile solution.
- the conditions for the deprotection reaction in each step were the same, i.e., the temperature was 25°C, the reaction time was 70 seconds, the deprotection reagent was a dichloroacetic acid solution in dichloromethane (3% V/V), and the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytrityl protecting group on the solid support was 5:1.
- reaction conditions for each step of the coupling reaction were the same, including a temperature of 25°C, a molar ratio of the nucleic acid sequence connected to the solid phase support to the nucleoside monomer of 1:10, a molar ratio of the nucleic acid sequence connected to the solid phase support to the coupling reagent of 1:65, and a reaction time of The reaction time was 600 seconds and the coupling reagent was a 0.5 M acetonitrile solution of 5-ethylthio-1H-tetrazole.
- the oxidation reaction conditions in each step were the same, including a temperature of 25°C, a reaction time of 15 seconds, and an oxidizing agent of 0.05 M iodine water.
- the molar ratio of iodine to the nucleic acid sequence connected to the solid phase support in the coupling step was 30:1.
- each step of the sulfurization reaction includes a temperature of 25°C, a reaction time of 300 seconds, and a sulfurization reagent of hydrogenated xanthan.
- the molar ratio of the sulfurization reagent to the nucleic acid sequence connected to the solid phase support in the coupling step is 120:1.
- the capping conditions are the same for each step, including a temperature of 25°C and a reaction time of 15 seconds.
- the nucleic acid sequence connected to the solid phase carrier is cut, deprotected, purified, desalted, and then freeze-dried to obtain the sense chain and the antisense chain; finally, the two chains are heated and annealed to obtain the product, freeze-dried, and freeze-dried to obtain freeze-dried powder.
- the synthesized siRNAs are shown in Table 1 and Table 1-1, and the synthesized siRNA modifications are shown in Table 2.
- siRNA conjugate has the structure shown in the following formula II:
- L96-A is reacted with NH 2 -SPS to obtain L96-B:
- the obtained filter cake was capped with a CapA/CapB mixed solution to obtain L96-B, which is a solid phase carrier containing a conjugate molecule, and then the nucleoside monomer was connected to the conjugate molecule under a coupling reaction, and then the siRNA sense chain connected to the conjugate molecule was synthesized according to the siRNA molecule synthesis method described above, and the siRNA antisense chain was synthesized using the siRNA molecule synthesis method described above, and annealing was performed to generate the siRNA conjugate of the present application.
- the synthesized siRNA conjugates are shown in Table 3.
- HepG2 cells were purchased from the Cell Bank of Type Culture Collection Committee of the Chinese Academy of Sciences, catalog number SCSP-510;
- RNA extraction kit 96 Kit, Catalog No. QIAGEN-74182;
- RNAiMAX transfection reagent purchased from Invitrogen, catalog number 13778-150;
- MEM medium purchased from Gibco, catalog number 41090036;
- TaqMan TM Gene Expression Master Mix purchased from Applied Biosystems, catalog number 4369016;
- Opti-MEM Reduced serum medium, purchased from Gibco, catalog number 31985070;
- Target MARC1 primer and probe set purchased from Thermo, Hs00224227_m1;
- GPDH TaqMan Gene Expression Assay
- HepG2 cells were plated in fresh MEM medium in a 96-well plate and cultured for 48 hours.
- the cultured cells were resuspended in MEM medium without PS (penicillin-streptomycin mixture) to prepare a cell suspension with a density of 1.11 ⁇ 10 5 /mL.
- the cell suspension was plated in a 96-well plate and 90 ⁇ L of cell suspension was added to each well, i.e., 10,000 cells/well.
- siRNA in the experimental process of this example Centrifuge the dry powder of the siRNA to be tested and siRNA modifications (for ease of description, collectively referred to as siRNA in the experimental process of this example) at low temperature and high speed, and then dissolve it with ultrapure distilled water (ULtraPure Distilled Water) to prepare a 100 ⁇ M siRNA stock solution.
- ULP Ultrapure distilled water
- siRNA stock solution Q Take 2 ⁇ L of the 100 ⁇ M siRNA stock solution prepared in step 3.2.2 above, add 18 ⁇ L of ultrapure distilled water to obtain a siRNA stock solution Q with a final concentration of 10 ⁇ M;
- siRNA stock solution Y Take 2 ⁇ L of the 10 ⁇ M siRNA stock solution Q prepared in step a), add 18 ⁇ L of ultrapure distilled water to obtain a siRNA stock solution Y with a final concentration of 1 ⁇ M;
- step c Take 2 ⁇ L of the 1 ⁇ M siRNA stock solution Y prepared in step b), add 18 ⁇ L of ultrapure distilled water to obtain a siRNA stock solution E with a final concentration of 0.1 ⁇ M;
- RNAiMAX transfection reagent diluent Take 3 ⁇ L RNAiMAX transfection reagent was added to 97 ⁇ L Opti-MEM to obtain RNAiMAX transfection reagent diluent; RNAiMAX transfection reagent diluent was mixed with the 2 nM siRNA diluent W prepared in step 3.2.3 at a volume ratio of 1:1, allowed to stand for 5 minutes, and 10 ⁇ L of the transfection mixture was added to a 96-well plate to transfect the HepG2 cells cultured in step 3.2.1 (final volume 100 ⁇ L, siRNA concentration in this system was 0.1 nM).
- RNAiMAX transfection reagent diluent Take 3 ⁇ L RNAiMAX transfection reagent was added to 97 ⁇ L Opti-MEM to obtain RNAiMAX Transfection reagent diluent; RNAiMAX transfection reagent diluent and 200nM siRNA diluent Z prepared in step 3.2.3 were mixed in a volume ratio of 1:1 to prepare a transfection mixture, which was allowed to stand for 5 minutes. 10 ⁇ L of the transfection mixture was added to a 96-well plate to transfect the HepG2 cells cultured in step 3.2.1 (final volume 100 ⁇ L, the concentration of siRNA in this system was 10nM).
- the cells were cultured for 48 hours after the above transfection; 2 replicates were set for each concentration (10 nM and 0.1 nM).
- RNA obtained in step 3.2.5 was reverse transcribed into cDNA using a reverse transcription kit, following the steps below:
- step b) The reverse transcription product obtained in step b) was stored at 4° C. for real-time PCR analysis.
- Inhibition rate (%) (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group ⁇ 100%
- the inhibition rate of the siRNA disclosed in the present invention on the MARC1 gene is at least about 21%, ranging from about 21% to about 97%, and the concentration of 10nM generally shows a higher inhibition rate on the MARC1 gene than the concentration of 1nM, showing a dose-dependent effect.
- the inhibition rate of 0.1nM N-ER-FY025096 on the MARC1 gene is about 89%, and 10nM is about 93%; the inhibition rate of 0.1nM N-ER-FY025102 on the MARC1 gene is about 89%, and 10nM is about 92%; the inhibition rate of 0.1nM N-ER-FY025175 on the MARC1 gene is about 90%, and 10nM is about 94%, indicating that these siRNAs have strong inhibition on the MARC1 gene.
- the inhibition rate of the siRNA modification disclosed in the present invention on the MARC1 gene is at least about 30%, ranging from about 30% to about 98%, and the concentration of 10nM generally shows a higher inhibition rate on the MARC1 gene than the concentration of 1nM, showing a dose-dependent effect.
- the inhibition rates of 0.1 nM N-ER-FY025096M2, N-ER-FY025096M3, N-ER-FY025096M6, N-ER-FY025096M7, N-ER-FY025096M8, and N-ER-FY025096M9 on the MARC1 gene were about 81% to about 85%, and 10 nM was about 90% to about 95%; 0.1 nM N-ER-FY025102M2, N-ER-FY025102M3, N-ER-FY025102M4, N-ER-FY025102M5, N-ER-FY025102M6, N-ER-FY025102M7, N-ER-FY025102M8, and N-ER-FY025102M9
- the inhibition rates of 2M8 and N-ER-FY025102M9 on MARC1 gene are about 69%-about 90%, and 10nM is about 90%-about 95%; the inhibition rates of 0.1n
- the concentration range of the following siRNA to be tested was set (nM) as follows: starting from 10 nM, 3-fold dilution, 8 concentration gradients: 10 nM, 3.33 nM, 1.11 nM, 0.37 nM, 0.12 nM, 0.041 nM, 0.014 nM, 0.0045 nM; and IC 50 was determined in a manner similar to that in 3.2.
- ⁇ Ct ⁇ Ct(test sample group)- ⁇ Ct(Mock group), where the Mock group represents the group without siRNA added compared with the test sample group;
- Inhibition rate (%) (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group ⁇ 100%
- Top represents the percentage inhibition rate at the top platform, and the Top standard of the curve is generally between 80% and 120%;
- Bottom represents the percentage inhibition rate at the bottom platform, and the Bottom of the curve is generally between -20% and 20%;
- HillSlope represents the slope of the percentage inhibition rate curve.
- Example 4 Determination of the inhibition rate of siRNA conjugates in inhibiting MARC1 gene expression
- PHH culture medium invitroGRO CP Medium, purchased from Bioreclamation, catalog number: S03316;
- RNAiMAX transfection reagent purchased from Invitrogen, catalog number: 13778-150;
- FastQuant RT Kit (containing gDNase), purchased from TianGen, catalog number: KR116-02;
- the MARC1 primer and probe were synthesized by Sangon Biotech;
- GPDH TaqMan Gene Expression Assay
- siRNA conjugates (final concentrations of siRNA conjugates were 2 nM and 0.2 nM, respectively, in duplicate) were transfected into PHH cells by the following process: frozen PHH cells were taken, revived, counted, and the cells were adjusted to 6 ⁇ 10 5 cells/mL, and then applied RNAiMax transfection reagent was used to transfer siRNA conjugates into cells, and 54,000 cells were seeded into 96-well plates at a density of 1:1. 100 ⁇ L of PHH culture medium was added to each well. The cells were cultured in a 5% CO 2 , 37°C incubator. After 48 hours, the culture medium was removed and the cells were collected for total RNA extraction. Use according to the kit product instructions Total RNA was extracted using 96Kit.
- siRNA conjugates (final concentrations of siRNA conjugates were 200 nM and 10 nM, respectively, in duplicate) were freely taken into PHH cells, and the process was as follows: frozen PHH cells were taken, revived, counted, and adjusted to 6 ⁇ 10 5 cells/mL, and siRNA conjugates were added at the same time, and inoculated into 96-well plates at a density of 54,000 cells per well, and 100 ⁇ L of PHH culture medium was added to each well. The cells were cultured in a 5% CO 2 , 37°C incubator. After 48 hours, the culture medium was removed and the cells were collected for total RNA extraction. Use according to the kit product instructions Total RNA was extracted using 96Kit.
- step (1) (2) Add 4 ⁇ L 5 ⁇ HiScript III qRT SuperMix directly to the reaction plate in step (1). Run the program: 37°C for 15 minutes, 85°C for 5 seconds.
- ⁇ Ct ⁇ Ct(test sample group) ⁇ Ct(Mock group), where the Mock group represents a group without the addition of siRNA conjugates compared with the test sample group;
- Inhibition rate (%) (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group ⁇ 100%
- the inhibition rate of the siRNA conjugates disclosed in the present invention on the MARC1 gene was at least about 36%, ranging from about 36% to about 94%, and showed a dose-dependent effect in both transfection and free uptake.
- N-ER-FY025096M2L96, N-ER-FY025096M3L96, N-ER-FY025096M6L96, N-ER -FY025096M7L96, N-ER-FY025096M8L96, and N-ER-FY025096M9L96 showed an inhibition rate of about 72% to about 77% on the MARC1 gene, and about 84% to about 89% at 200 nM.
- N-ER-FY025096M2L96, N-ER-FY025096M3L96, N-ER-FY025096M6L96, and N-ER-FY025096M7L96 showed an inhibition rate of about 72% to about 77% on the MARC1 gene, and about 84% to about 89% at 200 nM.
- the inhibition rates of 5096M7L96, N-ER-FY025096M8L96, and N-ER-FY025096M9L96 on the MARC1 gene were about 70% to about 74%, and 2nM was about 87% to about 89%; under the free uptake method, 10nM N-ER-FY025102M2L96, N-ER-FY025102M3L96, N-ER-FY025102M6L96, N-ER-FY025102M
- the inhibition rate of MARC1 gene by N-ER-FY025102M7L96, N-ER-FY025102M8L96, and N-ER-FY025102M9L96 was about 81% to about 83%, and 200nM was about 85% to about 89%.
- N-ER-FY025102M2L96, N-ER-FY025102M3L96, N-ER-FY025102M6L96, N-ER-FY025102M7L96 The inhibition rate of N-ER-FY025102M8L96 and N-ER-FY025102M9L96 on the MARC1 gene was about 80% to about 84%, and 2nM was about 83% to about 90%; under free uptake mode, the inhibition rate of 10nM N-ER-FY025175M2L96, N-ER-FY025175M3L96, N-ER-FY025175M6L96, N-ER-FY025175M7L96, N-ER-FY025175M8L96, and N-ER-FY025175M9L96 on the MARC1 gene was about 87% - about 93%, 200nM is about 88% - about 94%, under transfection mode,
- Example 5 Silencing effect of siRNA conjugates in mice expressing the human MARC1 (hMARC1) gene
- mice Fourteen days after AAV virus injection, the mice were divided into groups (6 mice per group) and subcutaneously administered with a single 1, 3, or 10 mg/kg (mpk) dose of N-ER-FY025096M2L96, N-ER-FY025102M2L96, N-ER-FY025103M2L96, N-ER-FY025096M6L96, N-ER-FY025102M6L96, N-ER-FY025172M6L96, N-ER-FY025173M6L96, and N-ER-FY02
- the administration volume was 5 ⁇ L/g, and the solvent was RNase-free sterile PBS.
- the blank group was injected with the same volume of RNase-free sterile PBS.
- the SEAP protein expression i.e., hMARC1 protein expression was detected on days 7, 14, 21, 28, 35, 42, and 49 after administration.
- Inhibition rate (%) (1-relative expression of SEAP protein in the test sample group/relative expression of SEAP protein in the blank group) * 100%
- the siRNA conjugates of the present application have a high inhibitory activity on the hMARC1 gene in vivo and can reduce the hMARC1 protein level for a long time. From the experimental results of drugs N-ER-FY025096M2L96 and N-ER-FY025102M2L96 at different doses, it can be seen that the higher the dose of the siRNA conjugate, the higher the inhibition rate and the longer the inhibition time.
- the drugs N-ER-FY025096M6L96, N-ER-FY025096M8L96, N-ER-FY025102M8L96, and N-ER-FY025175M8L96 can all achieve an inhibition rate of more than 80%.
- the inhibition rate of hMARC1 of 1 mpk dose of N-ER-FY025096M2L96 was about 29%-about 60% within 7-49 days, 3 mpk was about 55%-about 79% within 7-49 days, and 10 mpk was about 71%-about 87% within 7-49 days;
- the inhibition rate of hMARC1 of 1 mpk dose of N-ER-FY025102M2L96 was about 24%-about 60% within 7-49 days, 3 mpk was about 47%-about 78% within 7-49 days, and 10 mpk was about 76%-about 84% within 7-49 days;
- the inhibition rate of hMARC1 of 3 mpk dose of N-ER-FY025096M6L96 was about 70%-about 82% within 7-49 days;
- the inhibition rate of N-ER-FY025102M6L9 on hMARC1 at 3mpk was about 36% to about 71% within 7-49 days;
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- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
Abstract
A double-stranded ribonucleic acid for inhibiting MARC1 gene expression, a double-stranded ribonucleic acid modifier, a double-stranded ribonucleic acid conjugate, a prodrug, a pharmaceutical composition, a use, and a method for inhibiting intracellular MARC1 gene expression. The double-stranded ribonucleic acid can bind in cells to form an RNA-induced silencing complex (RISC), is used for cleaving mRNA transcribed by an MARC1 gene, can efficiently and specifically inhibit the expression of the MARC1 gene, is used for treating MARC1 gene-mediated diseases, and has important application prospects in clinical disease treatment.
Description
本公开属于生物医药领域,具体来说,本公开涉及一种用于抑制MARC1基因表达的双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药、药物组合物和用途,以及用于抑制细胞内MARC1基因表达的方法。The present disclosure belongs to the field of biomedicine. Specifically, the present disclosure relates to a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug, a pharmaceutical composition and uses for inhibiting MARC1 gene expression, and a method for inhibiting MARC1 gene expression in a cell.
肝病在世界范围内的死亡和残疾中占导着主要原因,慢性疾病会逐渐破坏肝细胞的再生乃至摧毁,导致肝纤维化和肝硬化。而非酒精性脂肪性肝病(nonalcoholic fatty liver disease,NAFLD)是世界上最常见的慢性肝病,其患病率在过去20年中翻了一番,现在估计影响大约20-30%的世界人口,造成非酒精性脂肪性肝病的病理是有一系列因素构成。在一些个体中,肝脏中异位脂肪的积累,称为脂肪变性,引发炎症和肝细胞损伤,导致进一步的疾病,称为非酒精性脂肪性肝炎(nonalcoholic steatohepatitis,NASH)。NASH被定义为具有细胞损伤、炎症和不同程度的疤痕或纤维化表象的脂质聚集。Liver disease is a leading cause of death and disability worldwide. Chronic disease progressively impairs liver cell regeneration and even destroys it, leading to liver fibrosis and cirrhosis. Nonalcoholic fatty liver disease (NAFLD) is the most common chronic liver disease in the world. Its prevalence has doubled in the past 20 years and is now estimated to affect approximately 20-30% of the world's population. The pathology of NAFLD is a combination of factors. In some individuals, the accumulation of ectopic fat in the liver, called steatosis, triggers inflammation and liver cell damage, leading to a further disease called nonalcoholic steatohepatitis (NASH). NASH is defined as lipid accumulation with cell damage, inflammation, and varying degrees of scarring or fibrosis.
线粒体偕胺肟还原成分1(mitochondrial amidoxime reducing component 1,MARC1)是一种能够还原N-羟基化化合物的含钼酶,并与线粒体外膜相关联。MARC1基因中一种常见的错义变体最近被证明可以保护肝脏免受脂肪肝和各种原因引起的肝硬化的侵袭。报道称(Luukkonen P.K.,Juuti A.,Sammalkorpi H.,et al.MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans.Journal of Hepatology,2020,73:696–739.),与非携带者(n=65)相比,MARC1变异体携带者(n=53)具有更高的肝脏多不饱和磷脂酰胆碱浓度,然而这一点可能与NASH相关的发病因素相关。此外,研究表明通过敲除患者体内MARC1基因的表达,从而治疗患者中的高血糖症、糖尿病、代谢综合征、胰岛素抵抗(胰岛素不敏感性)、葡萄糖耐量异常、高血糖水平、肺动脉高血压和/或由任何前述引起的病症。Mitochondrial amidoxime reducing component 1 (MARC1) is a molybdenum-containing enzyme that reduces N-hydroxylated compounds and is associated with the outer mitochondrial membrane. A common missense variant in the MARC1 gene has recently been shown to protect the liver from fatty liver disease and cirrhosis of all causes. It was reported (Luukkonen P.K., Juuti A., Sammalkorpi H., et al. MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans. Journal of Hepatology, 2020, 73: 696–739.) that MARC1 variant carriers (n=53) had higher hepatic polyunsaturated phosphatidylcholine concentrations compared with non-carriers (n=65), which may be related to the pathogenesis associated with NASH. In addition, the study showed that by knocking out the expression of the MARC1 gene in patients, hyperglycemia, diabetes, metabolic syndrome, insulin resistance (insulin insensitivity), impaired glucose tolerance, high blood sugar levels, pulmonary hypertension and/or conditions caused by any of the above in patients can be treated.
综上,通过抑制患者体内MARC1基因的表达能够预防和治疗肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征。目前还没有仅针对此类基因表达的相关药物上市,因此开发靶向MARC1靶点药物具有重要的价值。本发明旨在提供siRNA组合物,该组合物有效应用于MARC1基因的RNA转录本的RNA诱导沉默复合体(RISC)介导的切割,从而能够选择性及有效地抑制MARC1基因的表达,实现疾病治疗的目的。In summary, by inhibiting the expression of MARC1 gene in patients, obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic fatty hepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome can be prevented and treated. Currently, there are no related drugs targeting only the expression of such genes on the market, so it is of great value to develop drugs targeting MARC1 target. The present invention aims to provide siRNA compositions, which are effectively applied to RNA-induced silencing complex (RISC)-mediated cleavage of RNA transcripts of MARC1 genes, so as to selectively and effectively inhibit the expression of MARC1 genes and achieve the purpose of disease treatment.
发明内容Summary of the invention
发明要解决的问题Problem that the invention aims to solve
鉴于现有技术中存在的问题,例如,需要开发更多MARC1抑制剂,用于治疗包括肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征等在内的MARC1相关疾病以及其他尚未鉴定的相关病症、病理或综合征。本公开旨在提供一系列用于抑制MARC1基因表达的双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药及药物组合物,能够抑制MARC1基因表达,在临床疾病治疗中具有重要应用前景。
In view of the problems existing in the prior art, for example, more MARC1 inhibitors need to be developed for the treatment of MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, and other unidentified related conditions, pathologies or syndromes. The present disclosure aims to provide a series of double-stranded RNAs, double-stranded RNA modifications, double-stranded RNA conjugates, prodrugs and pharmaceutical compositions for inhibiting MARC1 gene expression, which can inhibit MARC1 gene expression and have important application prospects in clinical disease treatment.
用于解决问题的方案Solutions for solving problems
[1].一种双链核糖核酸,所述双链核糖核酸包括正义链和反义链,所述正义链与所述反义链反向互补和/或基本上反向互补形成所述双链核糖核酸的双链区;[1] A double-stranded RNA, comprising a sense strand and an antisense strand, wherein the sense strand is reverse complementary to the antisense strand and/or substantially reverse complementary to form a double-stranded region of the double-stranded RNA;
其中,所述正义链包含与靶标序列中至少15个连续核苷酸的差异不超过3个核苷酸的序列A,所述反义链包含与靶标序列中至少15个连续核苷酸的反向互补序列的差异不超过3个核苷酸的序列B;The sense strand comprises a sequence A that differs by no more than 3 nucleotides from at least 15 consecutive nucleotides in the target sequence, and the antisense strand comprises a sequence B that differs by no more than 3 nucleotides from the reverse complementary sequence of at least 15 consecutive nucleotides in the target sequence;
所述靶标序列选自如SEQ ID NO:1~9和812~817任一项所示的核苷酸序列和SEQ ID NO:1~9和812~817任一项中包含的至少15个连续核苷酸组成的序列。The target sequence is selected from a nucleotide sequence shown in any one of SEQ ID NOs: 1 to 9 and 812 to 817 and a sequence consisting of at least 15 consecutive nucleotides contained in any one of SEQ ID NOs: 1 to 9 and 812 to 817.
[2].根据[1]所述的双链核糖核酸,其中,所述靶标序列选自如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列,所述正义链包含如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中至少15个连续核苷酸组成的序列A,所述反义链包含如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中至少15个连续核苷酸组成的序列反向互补和/或基本上反向互补的序列B。[2]. The double-stranded RNA according to [1], wherein the target sequence is selected from the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, the sense strand comprises a sequence A consisting of at least 15 consecutive nucleotides in the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, and the antisense strand comprises a sequence B that is reverse complementary and/or substantially reverse complementary to a sequence consisting of at least 15 consecutive nucleotides in the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830.
[3].根据[1]或[2]所述的双链核糖核酸,其中,所述正义链由15-28个核苷酸组成,优选19-25个核苷酸,更优选19-23个核苷酸,更优选19、21或23个核苷酸。[3] The double-stranded RNA according to [1] or [2], wherein the sense strand consists of 15-28 nucleotides, preferably 19-25 nucleotides, more preferably 19-23 nucleotides, and more preferably 19, 21 or 23 nucleotides.
[4].根据[3]所述的双链核糖核酸,其中,所述正义链的核苷酸序列是与SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中的15-28个连续核苷酸组成的序列相比差异不超过1个核苷酸的序列A,优选19-25个连续核苷酸,更优选19-23个连续核苷酸,更优选19、21或23个核苷酸。[4]. The double-stranded RNA according to [3], wherein the nucleotide sequence of the positive strand is a sequence A which differs by no more than 1 nucleotide from a sequence consisting of 15 to 28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811 and 818 to 830, preferably 19 to 25 consecutive nucleotides, more preferably 19 to 23 consecutive nucleotides, and more preferably 19, 21 or 23 nucleotides.
[5].根据[1]-[4]任一项所述的双链核糖核酸,其中,所述反义链由15-28个核苷酸组成,优选19-25个核苷酸,更优选19-23个核苷酸,更优选19、21或23个核苷酸。[5] The double-stranded ribonucleic acid according to any one of [1] to [4], wherein the antisense strand consists of 15-28 nucleotides, preferably 19-25 nucleotides, more preferably 19-23 nucleotides, and more preferably 19, 21 or 23 nucleotides.
[6].根据[5]所述的双链核糖核酸,其中,所述反义链的核苷酸序列是与SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中的15-28个连续核苷酸组成的序列的反向互补序列相比差异不超过1个核苷酸的序列B,优选19-25个连续核苷酸,更优选19-23个连续核苷酸,更优选19、21或23个核苷酸。[6]. The double-stranded RNA according to [5], wherein the nucleotide sequence of the antisense strand is a sequence B having a difference of no more than 1 nucleotide compared to the reverse complementary sequence of a sequence consisting of 15 to 28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811 and 818 to 830, preferably 19 to 25 consecutive nucleotides, more preferably 19 to 23 consecutive nucleotides, and more preferably 19, 21 or 23 nucleotides.
[7].根据[1]-[6]任一项所述的双链核糖核酸,其中,所述双链区的长度为15-25个核苷酸,优选19-23个核苷酸,更优选19-21个核苷酸,更优选19、21或23个核苷酸。[7]. The double-stranded ribonucleic acid according to any one of [1] to [6], wherein the length of the double-stranded region is 15-25 nucleotides, preferably 19-23 nucleotides, more preferably 19-21 nucleotides, and more preferably 19, 21 or 23 nucleotides.
[8].根据[1]-[7]任一项所述的双链核糖核酸,其中,[8] The double-stranded RNA according to any one of [1] to [7], wherein
所述正义链与所述反义链互补形成所述双链区,且所述正义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述反义链的3’末端形成平末端;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the sense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the antisense strand forms a blunt end; or,
所述正义链与所述反义链互补形成所述双链区,且所述反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述正义链的3’末端形成平末端;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the sense strand forms a blunt end; or,
所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均具有1-2个延伸出所述双链区的突出的核苷酸;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand each have 1-2 protruding nucleotides extending out of the double-stranded region; or,
所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均形成平末端。The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand both form blunt ends.
[9].根据[1]-[8]任一项所述的双链核糖核酸,其中,所述正义链与所述反义链选自如下组合:[9] The double-stranded RNA according to any one of [1] to [8], wherein the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表1、表1-1所示的任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链;The sense strand comprises the sense strand of any one of the siRNAs shown in Table 1 and Table 1-1 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA;
优选地,所述正义链与所述反义链选自如下组合:Preferably, the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表1所示的siRNA 262、264和330中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs 262, 264 and 330 shown in Table 1 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
[10].根据[1]-[9]任一项所述的双链核糖核酸,其中,所述正义链中每个核苷酸彼此独立地为修饰的核苷酸或未修饰的核苷酸,和/或,所述反义链中每个核苷酸彼此独立地
为修饰的核苷酸或未修饰的核苷酸。[10] The double-stranded RNA according to any one of [1] to [9], wherein each nucleotide in the sense strand is independently a modified nucleotide or an unmodified nucleotide, and/or each nucleotide in the antisense strand is independently is a modified nucleotide or an unmodified nucleotide.
[11].根据[1]-[10]任一项所述的双链核糖核酸,其中,所述正义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接,和/或,所述反义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接。[11]. The double-stranded RNA according to any one of [1] to [10], wherein any two nucleotides connected in the sense strand are connected by a phosphodiester bond or a phosphorothioate diester bond, and/or any two nucleotides connected in the antisense strand are connected by a phosphodiester bond or a phosphorothioate diester bond.
[12].根据[1]-[11]任一项所述的双链核糖核酸,其中,所述反义链的5’末端核苷酸连接5’磷酸基团或5’磷酸衍生基团,或,所述反义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团。[12] The double-stranded RNA according to any one of [1] to [11], wherein the 5' terminal nucleotide of the antisense strand is linked to a 5' phosphate group or a 5' phosphate derivative group, or the 5' terminal nucleotide of the antisense strand is not linked to a 5' phosphate group or a 5' phosphate derivative group.
[13].根据[1]-[12]任一项所述的双链核糖核酸,其中,所述双链核糖核酸为siRNA。[13]. The double-stranded RNA according to any one of [1] to [12], wherein the double-stranded RNA is siRNA.
[14].根据[1]-[13]任一项所述的双链核糖核酸,其中,所述双链核糖核酸为用于抑制MARC1基因表达的siRNA。[14] The double-stranded RNA according to any one of [1] to [13], wherein the double-stranded RNA is siRNA for inhibiting the expression of MARC1 gene.
[15].一种双链核糖核酸修饰物,其为如[1]-[14]任一项所述的双链核糖核酸的修饰物,所述双链核糖核酸修饰物包含如下至少一种的化学修饰:[15] A modified double-stranded RNA, which is a modified double-stranded RNA as described in any one of [1] to [14], wherein the modified double-stranded RNA comprises at least one of the following chemical modifications:
(1)正义链中至少一个核苷酸的修饰,(1) modification of at least one nucleotide in the sense strand,
(2)正义链中至少一个位置处的磷酸二酯键的修饰,(2) modification of the phosphodiester bond at at least one position in the sense strand,
(3)反义链中至少一个核苷酸的修饰,(3) modification of at least one nucleotide in the antisense strand,
(4)反义链中至少一个位置处的磷酸二酯键的修饰;(4) modification of the phosphodiester bond at at least one position in the antisense strand;
任选地,所述双链核糖核酸的正义链中序列A的3’末端连接由1-2个核苷酸组成的序列D,优选由1-2个胸腺嘧啶脱氧核糖核苷酸组成的序列D;和/或,所述双链核糖核酸的反义链中序列B的3’末端连接由1-2个核苷酸组成的序列E,优选由1-2个胸腺嘧啶脱氧核糖核苷酸组成的序列E;和/或,所述双链核糖核酸的正义链中序列A的3’末端排除1-2个核苷酸后形成序列A’;Optionally, the 3' end of sequence A in the sense strand of the double-stranded RNA is connected to a sequence D consisting of 1-2 nucleotides, preferably a sequence D consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence B in the antisense strand of the double-stranded RNA is connected to a sequence E consisting of 1-2 nucleotides, preferably a sequence E consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence A in the sense strand of the double-stranded RNA excludes 1-2 nucleotides to form sequence A';
可选地,所述双链核糖核酸修饰物的正义链和反义链选自如下的序列组合:Optionally, the sense strand and antisense strand of the double-stranded RNA modification are selected from the following sequence combinations:
所述正义链的核苷酸序列为序列A所示的序列,所述反义链的核苷酸序列为序列B所示的序列;The nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;
或者,所述正义链的核苷酸序列为序列A所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E;
或者,所述正义链的核苷酸序列为序列A连接序列D所示的序列,所述反义链的核苷酸序列为序列B所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;
或者,所述正义链的核苷酸序列为序列A连接序列D所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown by sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown by sequence B connected to sequence E;
或者,所述正义链的核苷酸序列为序列A’所示的序列,所述反义链的核苷酸序列为序列B所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;
或者,所述正义链的核苷酸序列为序列A’所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列。Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A’, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
[16].根据[15]所述的双链核糖核酸修饰物,其中,所述核苷酸的修饰选自2’-氟代修饰、2’-烷氧基修饰、2’-取代的烷氧基修饰、2’-烷基修饰、2’-取代的烷基修饰、2’-脱氧修饰、核苷酸衍生物修饰或其中任意两种以上的组合。[16]. The double-stranded RNA modified substance according to [15], wherein the modification of the nucleotide is selected from 2’-fluoro modification, 2’-alkoxy modification, 2’-substituted alkoxy modification, 2’-alkyl modification, 2’-substituted alkyl modification, 2’-deoxy modification, nucleotide derivative modification or a combination of any two or more thereof.
[17].根据[15]或[16]所述的双链核糖核酸修饰物,其中,所述核苷酸的修饰选自2’-F修饰、2’-O-CH3修饰、2’-O-CH2-CH2-O-CH3修饰、2’-O-CH2-CH=CH2修饰、2’-CH2-CH2-CH=CH2修饰、2’-脱氧修饰,核苷酸衍生物修饰或其中任意两种以上的组合。[17]. The modified double-stranded RNA according to [15] or [16], wherein the modification of the nucleotide is selected from 2'-F modification, 2'-O-CH 3 modification, 2'-O-CH 2 -CH 2 -O-CH 3 modification, 2'-O-CH 2 -CH=CH 2 modification, 2'-CH 2 -CH 2 -CH=CH 2 modification, 2'-deoxy modification, nucleotide derivative modification or a combination of any two or more thereof.
[18].根据[16]或[17]所述的双链核糖核酸修饰物,其中,所述核苷酸衍生物修饰中的核苷酸衍生物选自异核苷酸、LNA、ENA、cET、UNA或GNA。[18]. The double-stranded RNA modification according to [16] or [17], wherein the nucleotide derivative in the nucleotide derivative modification is selected from isonucleotides, LNA, ENA, cET, UNA or GNA.
[19].根据[15]-[18]任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述正义链中第7位、第9位、第10位和第11位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述正义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。
[19]. A double-stranded ribonucleic acid modified substance according to any one of [15] to [18], wherein, from the 5' end to the 3' end, the ribonucleotides at positions 7, 9, 10 and 11 in the sense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the sense strand are 2'-O-CH 3 modified ribonucleotides.
[20].根据[15]-[19]任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述正义链包含位于如下所示位置处的硫代磷酸二酯键:[20] The double-stranded RNA modification according to any one of [15] to [19], wherein the sense strand comprises a phosphorothioate diester bond located at the following position along the 5' end to the 3' end:
所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;
所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the sense strand;
所述正义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the sense strand;
所述正义链3’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 3' end of the sense strand;
或者,or,
所述正义链包含位于如下所示位置处的硫代磷酸二酯键:The sense strand contains phosphorothioate diester bonds located at the positions shown below:
所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;
所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting from the 5' end of the sense strand.
[21].根据[15]-[20]任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述反义链中任意奇数位置处的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,所述反义链中任意偶数位置处的核糖核苷酸为2’-F修饰的核糖核苷酸;[21] The double-stranded ribonucleic acid modified substance according to any one of [15] to [20], wherein, from the 5' end to the 3' end, the ribonucleotides at any odd-numbered positions in the antisense strand are 2'-O-CH 3- modified ribonucleotides, and the ribonucleotides at any even-numbered positions in the antisense strand are 2'-F-modified ribonucleotides;
或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;
或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第8位、第9位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 8, 9, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;
或者,沿5’末端向3’末端方向,所述反义链中第2位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第6位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, the ribonucleotide at position 6 in the antisense strand is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;
或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第7位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。Alternatively, along the direction from the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 14 and 16 in the antisense chain are 2'-F modified ribonucleotides, the ribonucleotide at position 7 in the antisense chain is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense chain are 2'-O- CH3 modified ribonucleotides.
[22].根据[15]-[21]任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述反义链的5’末端的核苷酸不连接5’磷酸基团或5’磷酸衍生基团,或,所述反义链的5’末端的核苷酸连接5’磷酸基团或5’磷酸衍生基团。[22] A double-stranded RNA modification according to any one of [15] to [21], wherein, in the direction from the 5’ end to the 3’ end, the nucleotide at the 5’ end of the antisense strand is not connected to a 5’ phosphate group or a 5’ phosphate derivative group, or the nucleotide at the 5’ end of the antisense strand is connected to a 5’ phosphate group or a 5’ phosphate derivative group.
[23].根据[15]-[22]任一项所述的双链核糖核酸修饰物,其中,所述反义链包含位于如下所示位置处的硫代磷酸二酯键:[23] The double-stranded RNA modification product according to any one of [15] to [22], wherein the antisense strand comprises a phosphorothioate diester bond located at the following position:
所述反义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the antisense strand;
所述反义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the antisense strand;
所述反义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the antisense strand;
所述反义链3’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting from the 3' end of the antisense strand.
[24].根据[15]-[23]任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物的正义链具有如(a1)-(a5)任一项所示的结构:[24] The double-stranded RNA modified substance according to any one of [15] to [23], wherein the sense strand of the double-stranded RNA modified substance has a structure as shown in any one of (a 1 ) to (a 5 ):
(a1)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-T-(s)-T-3’,(a 1 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(a2)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(a 2 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(a3)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(a 3 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(a4)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-3’,(a 4 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -3',
(a5)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-
mN15-mN16-mN17-mN18-mN19-mN20-mN21-3’;(a 5 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 - mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -3';
其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,wherein N 1 -N 23 are independently selected from ribonucleotides whose base is A, U, C or G,
大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,The capital letter T represents a deoxyribonucleotide with thymine as its base.
小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,The lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.
小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,The lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.
-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接。-(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.
[25].根据[15]-[24]任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物的反义链具有如(b1)-(b27)任一项所示的结构:[25] The double-stranded RNA modified substance according to any one of [15] to [24], wherein the antisense strand of the double-stranded RNA modified substance has a structure as shown in any one of (b 1 ) to (b 27 ):
(b1)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-T-(s)-T-3’,(b 1 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-T-(s)-T-3',
(b2)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 2 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b3)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 3 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b4)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 4 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b5)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 5 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b6)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-N20f-(s)-mN21-3’,(b 6 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-N 20 f-(s)-mN 21 -3',
(b7)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 7 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b8)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 8 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b9)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 9 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b10)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 10 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b11)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-N20f-mN21-(s)-N22f-(s)-mN23-3’,(b 11 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -N 20 f-mN 21 -(s)-N 22 f-(s)- mN 23 -3',
(b12)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 12 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b13)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 13 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b14)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 14 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3' ,
(b15)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 15 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3 ',
(b16)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 16 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b17)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 17 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b18)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 18 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b19)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N
14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 19 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 - mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b20)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 20 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b21)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 21 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b22)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 22 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b23)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 23 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b24)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 24 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b25)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 25 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b26)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 26 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b27)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’;(b 27 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3';
其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,wherein N 1 -N 23 are independently selected from ribonucleotides whose base is A, U, C or G,
大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,The capital letter T represents a deoxyribonucleotide whose base is thymine.
小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,The lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.
小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,The lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.
P1表示该字母右侧相邻的一个核苷酸为5’-磷酸核苷酸,P1 means that the nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide.
EVP表示该字母组合右侧相邻的一个核苷酸为5’-反式乙烯基膦酸酯核苷酸,EVP means that the nucleotide adjacent to the right side of the letter combination is a 5'-trans vinylphosphonate nucleotide.
-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接,-(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.
[GNA]表示其右侧相邻的一个核糖核苷酸为存在GNA修饰的核糖核苷酸。[GNA] indicates that the adjacent ribonucleotide on the right is a ribonucleotide with GNA modification.
[26].根据[15]-[25]任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物为siRNA修饰物。[26] The double-stranded RNA modified substance according to any one of [15] to [25], wherein the double-stranded RNA modified substance is a siRNA modified substance.
[27].根据[15]-[26]任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物为用于抑制MARC1基因表达的siRNA修饰物。[27]. The double-stranded RNA modified substance according to any one of [15] to [26], wherein the double-stranded RNA modified substance is a siRNA modified substance for inhibiting the expression of the MARC1 gene.
[28].根据[15]-[27]任一项所述的双链核糖核酸修饰物,其中,所述正义链与所述反义链选自如下组合:[28] The double-stranded RNA modified substance according to any one of [15] to [27], wherein the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表2所示的任意一种siRNA修饰物的正义链,所述反义链包含对应siRNA修饰物的反义链;The sense strand comprises the sense strand of any one of the siRNA modifications shown in Table 2 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA modification;
优选地,所述正义链与所述反义链选自如下组合:Preferably, the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表2所示的siRNA 356-siRNA 363、siRNA 366-siRNA 373和siRNA 433-siRNA 440中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs siRNA 356-siRNA 363, siRNA 366-siRNA 373 and siRNA 433-siRNA 440 shown in Table 2 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
[29].一种双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物包括如[1]-[14]任一项所述的双链核糖核酸,或如[15]-[28]任一项所述的双链核糖核酸修饰物;以及,缀合连接于所述双链核糖核酸或所述双链核糖核酸修饰物的缀合基团。[29]. A double-stranded RNA conjugate, wherein the double-stranded RNA conjugate comprises the double-stranded RNA as described in any one of [1]-[14], or the double-stranded RNA modification as described in any one of [15]-[28]; and a conjugated group conjugated to the double-stranded RNA or the double-stranded RNA modification.
[30].根据[29]所述的双链核糖核酸缀合物,其中,所述缀合基团具有如下任一所示的结构:
[30] The double-stranded RNA conjugate according to [29], wherein the conjugated group has any of the following structures:
[30] The double-stranded RNA conjugate according to [29], wherein the conjugated group has any of the following structures:
[31].根据[29]或[30]所述的双链核糖核酸缀合物,其中,所述缀合基团连接于正义链的3’末端。[31]. The double-stranded RNA conjugate according to [29] or [30], wherein the conjugated group is connected to the 3’ end of the sense strand.
[32].根据[31]所述的双链核糖核酸缀合物,其中,所述缀合基团通过磷酸二酯键与正义链的3’末端缀合连接;[32] The double-stranded RNA conjugate according to [31], wherein the conjugated group is conjugated to the 3' end of the sense strand via a phosphodiester bond;
优选地,所述双链核糖核酸缀合物的正义链与反义链互补形成所述双链核糖核酸缀合物的双链区,且所述正义链的3’末端形成平末端,所述反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸;Preferably, the sense strand and the antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region;
或者,or,
所述双链核糖核酸缀合物的正义链与反义链互补形成所述双链核糖核酸缀合物的双链区,且所述正义链的3’末端形成平末端,所述反义链的3’末端形成平末端。The sense strand and antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, while the 3' end of the antisense strand forms a blunt end.
[33].根据[29]-[32]任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物具有如下所示结构:
[33] The double-stranded RNA conjugate according to any one of [29] to [32], wherein the double-stranded RNA conjugate has the following structure:
[33] The double-stranded RNA conjugate according to any one of [29] to [32], wherein the double-stranded RNA conjugate has the following structure:
其中,双螺旋结构为双链核糖核酸或双链核糖核酸修饰物。The double helix structure is double-stranded RNA or a modified double-stranded RNA.
[34].根据[29]-[33]任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物为siRNA缀合物。[34]. The double-stranded RNA conjugate according to any one of [29] to [33], wherein the double-stranded RNA conjugate is a siRNA conjugate.
[35].根据[29]-[34]任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物是用于抑制MARC1基因表达的siRNA缀合物。[35] The double-stranded RNA conjugate according to any one of [29] to [34], wherein the double-stranded RNA conjugate is a siRNA conjugate for inhibiting the expression of the MARC1 gene.
[36].根据[29]-[35]任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物由本文表1所示的任意一种siRNA与缀合基团连接形成,或者,所述双链核糖核酸缀合物由本文表1-1所示的任意一种siRNA与缀合基团连接形成,或者,所述双链核糖核酸
缀合物由本文表2所示的任意一种siRNA修饰物与缀合基团连接形成;[36]. The double-stranded RNA conjugate according to any one of [29] to [35], wherein the double-stranded RNA conjugate is formed by connecting any one of the siRNAs shown in Table 1 herein to a conjugated group, or the double-stranded RNA conjugate is formed by connecting any one of the siRNAs shown in Table 1-1 herein to a conjugated group, or the double-stranded RNA conjugate is formed by connecting any one of the siRNAs shown in Table 1-1 herein to a conjugated group, The conjugate is formed by connecting any one of the siRNA modifications shown in Table 2 herein to a conjugation group;
优选地,所述双链核糖核酸缀合物中,其中,所述正义链与所述反义链选自如下组合:Preferably, in the double-stranded RNA conjugate, the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表3所示的任意一种siRNA缀合物的正义链,所述反义链包含对应siRNA缀合物的反义链;The sense strand comprises the sense strand of any one of the siRNA conjugates shown in Table 3 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA conjugate;
更优选地,所述正义链与所述反义链选自如下组合:More preferably, the sense strand and the antisense strand are selected from the following combinations:
所述正义链包含本文表3所示的siRNA 451-siRNA 456、siRNA 462-siRNA 467和siRNA 516-siRNA 521中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs siRNA 451-siRNA 456, siRNA 462-siRNA 467 and siRNA 516-siRNA 521 shown in Table 3 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
[37].[1]-[14]任一项所述的双链核糖核酸、[15]-[28]任一项所述的双链核糖核酸修饰物或[29]-[36]任一项所述的双链核糖核酸缀合物的前药。[37]. A prodrug of the double-stranded RNA described in any one of [1]-[14], the modified double-stranded RNA described in any one of [15]-[28], or the double-stranded RNA conjugate described in any one of [29]-[36].
[38].一种药物组合物,其中,所述药物组合物包括如下至少一项:如[1]-[14]任一项所述的双链核糖核酸,如[15]-[28]任一项所述的双链核糖核酸修饰物,如[29]-[36]任一项所述的双链核糖核酸缀合物,如[37]所述的前药。[38]. A pharmaceutical composition, wherein the pharmaceutical composition comprises at least one of the following: a double-stranded RNA as described in any one of [1]-[14], a double-stranded RNA modification as described in any one of [15]-[28], a double-stranded RNA conjugate as described in any one of [29]-[36], or a prodrug as described in [37].
[39].根据[38]所述的药物组合物,其中,所述药物组合物还包括一种或多种药学上可接受的载体,以及任选地还包括一种或多种另外的治疗剂。[39] The pharmaceutical composition according to [38], wherein the pharmaceutical composition further comprises one or more pharmaceutically acceptable carriers and optionally one or more additional therapeutic agents.
[40].根据[1]-[14]任一项所述的双链核糖核酸,根据[15]-[28]任一项所述的双链核糖核酸修饰物,根据[29]-[36]任一项所述的双链核糖核酸缀合物,根据[37]所述的前药或根据[38]或[39]所述的药物组合物在如下至少一项中的用途:[40] Use of the double-stranded RNA according to any one of [1] to [14], the double-stranded RNA modified product according to any one of [15] to [28], the double-stranded RNA conjugate according to any one of [29] to [36], the prodrug according to [37] or the pharmaceutical composition according to [38] or [39] in at least one of the following:
(1)在体内或体外抑制MARC1基因表达,或制备用于抑制MARC1基因表达的药物;(1) Inhibiting MARC1 gene expression in vivo or in vitro, or preparing a drug for inhibiting MARC1 gene expression;
(2)用于预防或治疗与MARC1基因异常表达相关的疾病,或制备用于预防或治疗与MARC1基因异常表达相关的疾病的药物;(2) for preventing or treating diseases associated with abnormal expression of the MARC1 gene, or for preparing drugs for preventing or treating diseases associated with abnormal expression of the MARC1 gene;
(3)用于治疗患有将受益于MARC1基因表达降低的疾病的受试者,或制备用于治疗患有将受益于MARC1基因表达降低的疾病的受试者的药物。(3) Use for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene, or for preparing a medicament for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene.
[41].根据[40]所述的用途,其中,所述与MARC1基因异常表达相关的疾病选自如下疾病组成的组:[41]. The use according to [40], wherein the disease associated with abnormal expression of the MARC1 gene is selected from the group consisting of the following diseases:
肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征。Obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular disease, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes, and metabolic syndrome.
[42].一种用于在体内或体外抑制细胞内MARC1基因表达的方法,其中,所述方法包括将所述细胞与根据[1]-[14]任一项所述的双链核糖核酸,根据[15]-[28]任一项所述的双链核糖核酸修饰物,根据[29]-[36]任一项所述的双链核糖核酸缀合物,根据[37]所述的前药或根据[38]或[39]所述的药物组合物接触。[42]. A method for inhibiting the expression of MARC1 gene in cells in vivo or in vitro, wherein the method comprises contacting the cells with a double-stranded RNA according to any one of [1]-[14], a double-stranded RNA modification according to any one of [15]-[28], a double-stranded RNA conjugate according to any one of [29]-[36], a prodrug according to [37], or a pharmaceutical composition according to [38] or [39].
[43].根据[42]所述的方法,其中,所述细胞为体内细胞或体外细胞。[43] The method according to [42], wherein the cells are in vivo cells or in vitro cells.
[44].根据[42]或[43]所述的方法,其中,所述细胞在受试者体内。[44] The method according to [42] or [43], wherein the cell is in a subject.
[45].根据[44]所述的方法,其中,所述受试者为哺乳动物,优选为人。[45] The method according to [44], wherein the subject is a mammal, preferably a human.
[46].根据[44]或[45]所述的方法,其中,所述受试者具有如下至少一种特性:[46] The method according to [44] or [45], wherein the subject has at least one of the following characteristics:
体内MARC1基因异常表达,更具体地为MARC1基因异常高表达;Abnormal expression of MARC1 gene in vivo, more specifically abnormally high expression of MARC1 gene;
患有与MARC1基因异常表达相关的疾病;Suffering from diseases associated with abnormal expression of the MARC1 gene;
患有将受益于MARC1基因表达降低的疾病。Having a disease that would benefit from decreased expression of the MARC1 gene.
[47].如[1]-[14]任一项所述的双链核糖核酸,如[15]-[28]任一项所述的双链核糖核酸修饰物,如[29]-[36]任一项所述的双链核糖核酸缀合物,如[37]所述的前药或如[38]或[39]所述的药物组合物,用于治疗。[47]. A double-stranded RNA as described in any one of [1]-[14], a double-stranded RNA modification as described in any one of [15]-[28], a double-stranded RNA conjugate as described in any one of [29]-[36], a prodrug as described in [37] or a pharmaceutical composition as described in [38] or [39] for use in treatment.
发明的效果Effects of the Invention
在一些实施方案中,本公开提供的双链核糖核酸,能够在细胞内结合形成RNA诱导沉默复合物(RISC),切割MARC1基因转录的mRNA,高效、特异地抑制MARC1基因的
表达,用于治疗包括肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征等在内的MARC1相关疾病以及其他尚未鉴定的相关病症、病理或综合征。In some embodiments, the double-stranded RNA provided by the present disclosure can combine to form an RNA-induced silencing complex (RISC) in cells, cut the mRNA transcribed by the MARC1 gene, and efficiently and specifically inhibit the expression of the MARC1 gene. Expression, for the treatment of MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, as well as other related conditions, pathologies or syndromes that have not yet been identified.
进一步的,本公开中双链核糖核酸为siRNA,siRNA靶向结合并降解MARC1基因的转录产物mRNA,发挥RNA干扰的作用,抑制MARC1基因的蛋白表达,是一种抑制率高且特异性好的MARC1抑制剂。Furthermore, the double-stranded RNA in the present disclosure is siRNA, which targets and degrades the transcription product mRNA of the MARC1 gene, exerts the effect of RNA interference, and inhibits the protein expression of the MARC1 gene. It is a MARC1 inhibitor with a high inhibition rate and good specificity.
在一些实施方案中,本公开对双链核糖核酸进行修饰,得到双链核糖核酸修饰物,双链核糖核酸修饰物的稳定性高,适合体内疾病治疗中的应用。In some embodiments, the present disclosure modifies double-stranded RNA to obtain modified double-stranded RNA, which has high stability and is suitable for use in in vivo disease treatment.
进一步的,双链核糖核酸修饰物为siRNA修饰物,具有高的稳定性和较好的抑制活性。Furthermore, the double-stranded RNA modification is a siRNA modification, which has high stability and good inhibitory activity.
在一些实施方案中,本公开在双链核糖核酸、双链核糖核酸修饰物上连接缀合基团得到双链核糖核酸或双链核糖核酸修饰物的缀合物,能够用于向组织、细胞中高效靶向递送,降低双链核糖核酸或双链核糖核酸修饰物对非靶向的正常组织、细胞的影响,提高其在临床疾病治疗中的安全性。In some embodiments, the present invention discloses a conjugate of double-stranded RNA or double-stranded RNA modified substance obtained by connecting a conjugation group to double-stranded RNA or double-stranded RNA modified substance, which can be used for efficient targeted delivery to tissues and cells, reducing the impact of double-stranded RNA or double-stranded RNA modified substance on non-targeted normal tissues and cells, and improving its safety in clinical disease treatment.
进一步的,双链核糖核酸缀合物为siRNA缀合物,在保持siRNA抑制活性、稳定性的同时,兼具器官或组织靶向性,可降低对其他组织或器官的影响以及减少siRNA分子使用量,可达到减轻毒性和降低成本的目的。Furthermore, the double-stranded RNA conjugate is a siRNA conjugate, which has organ or tissue targeting while maintaining the inhibitory activity and stability of siRNA, can reduce the impact on other tissues or organs and reduce the amount of siRNA molecules used, thereby achieving the purpose of reducing toxicity and reducing costs.
进一步的,本公开中的缀合基团为式I所示结构的基团(GalNAc),GalNAc可用于向肝脏细胞、组织内的靶向递送,用于高效抑制肝脏内MARC1基因的表达。另外,本公开的siRNA缀合物毒性较低,具有优异的用药安全窗口。Furthermore, the conjugated group in the present disclosure is a group (GalNAc) of the structure shown in Formula I, and GalNAc can be used for targeted delivery to liver cells and tissues to effectively inhibit the expression of MARC1 gene in the liver. In addition, the siRNA conjugate disclosed in the present disclosure has low toxicity and an excellent drug safety window.
定义definition
除非有相反陈述,否则在本发明中所使用的术语具有下述含义。Unless otherwise stated, the terms used in the present invention have the following meanings.
在本发明的权利要求和/或说明书中,词语“一(a)”或“一(an)”或“一(the)”可以指“一个”,但也可以指“一个或多个”、“至少一个”以及“一个或多于一个”。In the claims and/or description of the present invention, the word "a" or "an" or "the" may mean "one", but may also mean "one or more", "at least one" and "one or more than one".
如在权利要求和说明书中所使用的,词语“包含”、“具有”、“包括”或“含有”是指包括在内的或开放式的,并不排除额外的、未引述的元件或方法步骤。As used in the claims and description, the words "comprising," "having," "including," or "containing" are inclusive or open-ended and do not exclude additional, unrecited elements or method steps.
在整个申请文件中,术语“约”表示:一个值包括测定该值所使用的装置或方法的误差的标准偏差。用以界定本发明的数值范围与参数皆是约略的数值,此处已尽可能精确地呈现具体实施例中的相关数值。然而,任何数值本质上不可避免地含有因前述测试方法或装置所致的标准偏差。因此,除非另有明确的说明,应当理解本公开所用的所有范围、数量、数值与百分比均经过“约”的修饰。在此处,“约”通常是指实际数值在一特定数值或范围的正负10%、5%、1%或0.5%之内。Throughout the application document, the term "about" means that a value includes the standard deviation of the error of the device or method used to determine the value. The numerical ranges and parameters used to define the present invention are all approximate values, and the relevant values in the specific embodiments have been presented as accurately as possible. However, any numerical value inherently inevitably contains standard deviations due to the aforementioned test methods or devices. Therefore, unless otherwise expressly stated, it should be understood that all ranges, quantities, values and percentages used in this disclosure are modified by "about". Here, "about" generally means that the actual value is within plus or minus 10%, 5%, 1% or 0.5% of a specific value or range.
本公开上下文中使用的术语“MARC1”,是指熟知的基因和多肽。MARC1基因、MARC1 mRNA序列是例如使用以下容易获得的:基因库(GenBank)、数据库(UniProt)、人类孟德尔遗传在线(OMIM)等。The term "MARC1" used in the context of this disclosure refers to the well-known gene and polypeptide. The MARC1 gene and MARC1 mRNA sequence are easily obtained using, for example, the following: Gene Bank (GenBank), database (UniProt), Online Mendelian Inheritance in Man (OMIM), etc.
术语“MARC1基因”,可以是野生型MARC1基因,或存在序列变异的MARC1基因突变体。在MARC1基因中的许多序列变异已经被鉴别并且可以发现在例如NCBIdbSNP和UniProt(参见,例如,ncbi.nlm.nih.gov/snp)中。The term "MARC1 gene" may be a wild-type MARC1 gene, or a MARC1 gene mutant with sequence variation. Many sequence variations in the MARC1 gene have been identified and can be found in, for example, NCBIdbSNP and UniProt (see, for example, ncbi.nlm.nih.gov/snp).
术语“多肽”、“蛋白”可互换地指通过共价键(例如肽键)相互连接的一串至少两个氨基酸残基,可以是重组多肽、天然多肽或合成多肽。多肽可以是线形或分支的,它可以包含修饰的氨基酸,并且它可以由非氨基酸隔断。该术语也包括已经被修饰(例如,二硫键形成、糖基化、脂质化、乙酰化、磷酸化或任何其他操作,如以标记组分缀合)
的氨基酸聚合物。The terms "polypeptide" and "protein" interchangeably refer to a string of at least two amino acid residues linked to each other by covalent bonds (e.g., peptide bonds), and may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide. A polypeptide may be linear or branched, it may contain modified amino acids, and it may be interrupted by non-amino acids. The term also includes polypeptides that have been modified (e.g., disulfide bond formation, glycosylation, lipidation, acetylation, phosphorylation, or any other manipulation, such as conjugation with a labeling component) amino acid polymers.
本公开上下文中使用的术语“靶标序列”是指在靶基因转录期间形成的mRNA分子的核苷酸序列的连续部分,包括作为对初级转录产物进行RNA加工的产物的mRNA。The term "target sequence" as used in the context of the present disclosure refers to a continuous portion of the nucleotide sequence of an mRNA molecule formed during transcription of a target gene, including mRNA that is a product of RNA processing of a primary transcript.
在一些实施方案中,靶标序列是不少于16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、50、80、100或150个连续连接核苷组成的核苷酸序列。在一些可选的实施方案中,靶标序列中可以包含另一段较短的靶标序列。在一些实施方案中,靶标序列中可以包含一个或多个较短的靶标序列。应当认为,被包含于同一段靶标序列中的两个以上的较短靶标序列之间具有相同的特征。In some embodiments, the target sequence is a nucleotide sequence consisting of no less than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 50, 80, 100 or 150 consecutively linked nucleosides. In some optional embodiments, another shorter target sequence may be included in the target sequence. In some embodiments, one or more shorter target sequences may be included in the target sequence. It should be considered that the two or more shorter target sequences included in the same target sequence have the same characteristics.
在一些实施方案中,靶基因为MARC1基因。在一些实施方案中,序列的靶部分将会是至少足够地长,以在MARC1基因的转录期间形成的mRNA分子的核苷酸序列部分处或其附近充当iRNA指导的切割的底物。In some embodiments, the target gene is the MARC1 gene.In some embodiments, the target portion of the sequence will be at least long enough to serve as a substrate for iRNA-directed cleavage at or near the nucleotide sequence portion of the mRNA molecule formed during transcription of the MARC1 gene.
在本技术领域中,“G”、“C”、“A”、“T”和“U”通常分别代表鸟嘌呤、胞嘧啶、腺嘌呤、胸腺嘧啶、尿嘧啶的碱基,但本领域中也通常知晓,“G”、“C”、“A”、“T”和“U”每个通常也代表分别含有鸟嘌呤、胞嘧啶、腺嘌呤、胸腺嘧啶和尿嘧啶作为碱基的核苷酸,这在表示脱氧核糖核酸序列和/或核糖核酸序列中是常见的方式,因此在本公开的上下文中,“G”、“C”、“A”、“T”、“U”表示的含义包括上述各种可能的情形,然而,应理解术语“核糖核苷酸”或“核苷酸”还可以指一种经修饰的核苷酸(如以下进一步详述)或一种替代性的置换部分。本领域人员可以意识到,鸟嘌呤、胞嘧啶、腺嘌呤以及尿嘧啶可以被其他部分置换而基本上不改变一种寡核苷酸(包括一种具有这种置换部分的核苷酸)的碱基配对特性。例如非限制性地,包括肌苷作为其碱基的核苷酸可以与包括腺嘌呤、胞嘧啶或尿嘧啶的核苷酸进行碱基配对。因此,含有尿嘧啶、鸟嘌呤或腺嘌呤的核苷酸可以在本发明表征的dsRNA的核苷酸序列中由含有例如肌苷的核苷酸替换。在另一个实例中,寡核苷酸中任何地方的腺嘌呤和胞嘧啶可以分别地替换为鸟嘌呤和尿嘧啶,以形成与靶mRNA的G-U摇摆碱基配对。含有这类替换部分的序列适用于本发明表征的组合物和方法。In the art, "G", "C", "A", "T" and "U" generally represent the bases of guanine, cytosine, adenine, thymine and uracil, respectively, but it is also generally known in the art that "G", "C", "A", "T" and "U" each generally represent nucleotides containing guanine, cytosine, adenine, thymine and uracil as bases, respectively, which is a common way to represent deoxyribonucleic acid sequences and/or ribonucleic acid sequences, so in the context of the present disclosure, the meanings represented by "G", "C", "A", "T", "U" include the above-mentioned various possible situations, however, it should be understood that the term "ribonucleotide" or "nucleotide" can also refer to a modified nucleotide (as further described below) or an alternative replacement part. Those skilled in the art can realize that guanine, cytosine, adenine and uracil can be replaced by other parts without substantially changing the base pairing properties of an oligonucleotide (including a nucleotide having such a replacement part). For example, without limitation, a nucleotide comprising inosine as its base can be base paired with a nucleotide comprising adenine, cytosine or uracil. Therefore, a nucleotide containing uracil, guanine or adenine can be replaced by a nucleotide containing, for example, inosine in the nucleotide sequence of the dsRNA characterized by the present invention. In another example, adenine and cytosine anywhere in the oligonucleotide can be replaced by guanine and uracil, respectively, to form a G-U wobble base pairing with the target mRNA. Sequences containing such replacement parts are suitable for the compositions and methods characterized by the present invention.
本公开上下文使用的术语“iRNA”、“RNAi试剂”、“iRNA试剂”、“RNA干扰剂”在此可互换使用,是指在此所定义的术语包含siRNA,并且介导通过RNA诱导沉默复合物(RISC)途径的RNA转录物靶向切割。iRNA通过已知为RNA干扰(RNAi)的过程指导mRNA的序列特异性降解。iRNA调节,例如抑制,靶基因在细胞(如受试者(如哺乳动物受试者)的细胞)中的表达。The terms "iRNA", "RNAi agent", "iRNA agent", "RNA interfering agent" used in the context of this disclosure are used interchangeably herein and refer to siRNAs as defined herein and mediate targeted cleavage of RNA transcripts through the RNA induced silencing complex (RISC) pathway. iRNAs direct sequence-specific degradation of mRNAs through a process known as RNA interference (RNAi). iRNAs modulate, e.g., inhibit, expression of a target gene in a cell, such as a cell of a subject, such as a mammalian subject.
本公开上下文使用的术语“双链核糖核酸”、“双链RNA(dsRNA)分子”、“dsRNA”可以互换地使用。术语“dsRNA”,是指核糖核酸分子的复合体,其具有双链结构,包含两条反向平行的和基本上互补的核酸链,被称为相对于靶基因,例如MARC1基因,具有“正义”和“反义”定向。在一些实施例中,双链核糖核酸(dsRNA)通过转录后基因沉默机制(在此称为RNA干扰或RNAi)触发靶RNA例如mRNA的降解。The terms "double-stranded ribonucleic acid", "double-stranded RNA (dsRNA) molecule", "dsRNA" used in the context of this disclosure can be used interchangeably. The term "dsRNA" refers to a complex of ribonucleic acid molecules having a double-stranded structure, comprising two antiparallel and substantially complementary nucleic acid strands, referred to as "sense" and "antisense" orientations relative to a target gene, such as the MARC1 gene. In some embodiments, double-stranded ribonucleic acid (dsRNA) triggers degradation of a target RNA, such as mRNA, through a post-transcriptional gene silencing mechanism (referred to herein as RNA interference or RNAi).
通常,dsRNA分子的每条链的大部分的核苷酸是核糖核苷酸,但是如在此详述的,两条链的每一者或两者还可以包括一个或多个非核糖核苷酸,例如,脱氧核糖核苷酸和/或修饰的核苷酸。另外,如本公开中所用,“双链核糖核酸”可以包括具有化学修饰的核糖核苷酸、磷酸骨架等等。这些修饰可以包括在此披露的或在本领域中已知的所有类型的修饰。Typically, most of the nucleotides of each strand of the dsRNA molecule are ribonucleotides, but as described in detail herein, each or both of the two strands may also include one or more non-ribonucleotides, e.g., deoxyribonucleotides and/or modified nucleotides. In addition, as used in the present disclosure, "double-stranded RNA" may include ribonucleotides, phosphate backbones, etc., with chemical modifications. These modifications may include all types of modifications disclosed herein or known in the art.
本公开上下文使用的术语“异核苷酸”是指核苷酸中碱基在核糖环上的位置发生改变而形成的化合物,例如,碱基不与核糖环的1’-位相连,而是与核糖环的2’-位或3’-位相连而形成的化合物。The term "isonucleotide" as used in the context of the present disclosure refers to a compound formed by a change in the position of the base on the ribose ring in a nucleotide, for example, a compound formed by a base not being attached to the 1'-position of the ribose ring but being attached to the 2'-position or 3'-position of the ribose ring.
在一些实施方案中,本公开的双链核糖核酸是siRNA,其与靶基因转录的mRNA序列(例如MARC1基因转录的mRNA序列)相互作用以指导靶RNA的切割。不希望受理论
约束,引入细胞中的长双链RNA被称作Dicer的III型核酸内切酶分解成siRNA(夏普(Sharp)等人,《基因与发育》(Genes Dev.)2001,15:485)。Dicer(核糖核酸酶III样酶)将dsRNA加工成至具有特征性双碱基3’突出端的19-23碱基对短干扰性RNA(Bernstein等人,(2001)自然(Nature)409:363)。这些siRNA随后掺入RNA诱导性沉默复合物(RISC)中,在其中一种或多种解旋酶解开siRNA双链体,这使得互补性反义链指导靶识别成为可能(Nykanen等人,(2001)细胞(Cell)107:309)。一旦与适宜的靶mRNA结合,RISC内部的一种或多种核酸内切酶切割靶以诱导沉默(巴希尔(Elbashir)等人,(2001)《基因与发育》(Genes Dev.)15:188)。In some embodiments, the double-stranded ribonucleic acid disclosed herein is a siRNA that interacts with an mRNA sequence transcribed from a target gene (e.g., an mRNA sequence transcribed from a MARC1 gene) to guide the cleavage of the target RNA. Constrained, long double-stranded RNA introduced into cells is broken down into siRNA by a type III nuclease called Dicer (Sharp et al., Genes Dev. 2001, 15: 485). Dicer (ribonuclease III-like enzyme) processes dsRNA into 19-23 base pair short interfering RNAs with characteristic two-base 3' overhangs (Bernstein et al., (2001) Nature 409: 363). These siRNAs are then incorporated into RNA-induced silencing complexes (RISC), where one or more helicases unwind the siRNA duplex, making it possible for complementary antisense strands to guide target recognition (Nykanen et al., (2001) Cell 107: 309). Once bound to a suitable target mRNA, one or more nucleases within RISC cleave the target to induce silencing (Elbashir et al., (2001) Genes Dev. 15: 188).
本公开上下文使用的术语“突出的核苷酸”是指当双链核糖核酸的一条链的一个3’端延伸超出另一条链的5’端时从该dsRNA的双链体结构突出的一个或多个不成对的核苷酸,或反之亦然。“平端”或“平末端”意指在该双链核糖核酸的那端处不存在不成对的核苷酸,即无核苷酸突出端。一种“平末端的”双链核糖核酸是一种在其整个长度上都是双链、即在该分子的任一端处都无核苷酸突出端的dsRNA。The term "overhanging nucleotides" as used in the context of this disclosure refers to one or more unpaired nucleotides that protrude from the duplex structure of a double-stranded ribonucleic acid when a 3' end of one strand of the dsRNA extends beyond the 5' end of the other strand, or vice versa. "Blunt end" or "blunt end" means that there are no unpaired nucleotides at that end of the double-stranded ribonucleic acid, i.e., no nucleotide overhang. A "blunt-ended" double-stranded ribonucleic acid is a dsRNA that is double-stranded throughout its length, i.e., has no nucleotide overhangs at either end of the molecule.
术语“反义链”是指双链核糖核酸中与靶标序列(例如,来源于人类MARC1 mRNA)基本上互补的一个区域的链。在该互补性区域不与该靶标序列完全互补的情况下,错配在末端区域是最为可容忍的,并且如果出现错配,它们通常在末端的一个或多个区域,例如5’和/或3末端的5、4、3、2或1个核苷酸之内。The term "antisense strand" refers to a strand of a double-stranded RNA that is substantially complementary to a target sequence (e.g., derived from human MARC1 mRNA). Where the region of complementarity is not completely complementary to the target sequence, mismatches are most tolerated in the terminal regions, and if mismatches occur, they are typically within one or more regions of the termini, e.g., 5, 4, 3, 2, or 1 nucleotides of the 5' and/or 3' termini.
术语“正义链”指的双链核糖核酸中含有与反义链区域基本上互补的区域的核酸链。The term "sense strand" refers to the nucleic acid strand of a double-stranded RNA that contains a region that is substantially complementary to a region of the antisense strand.
术语“互补”或“反向互补”一词可互相替代使用,并具有本领域技术人员周知的含义,即,在双链核酸分子中,一条链的碱基与另一条链上的碱基以互补的方式相配对。在DNA中,嘌呤碱基腺嘌呤(A)始终与嘧啶碱基胸腺嘧啶(T)(或者在RNA中为尿嘧啶(U))相配对;嘌呤碱基鸟嘌呤(G)始终与嘧啶碱基胞嘧啶(C)相配对。每个碱基对都包括一个嘌呤和一个嘧啶。当一条链上的腺嘌呤始终与另一条链上的胸腺嘧啶(或尿嘧啶)配对,以及鸟嘌呤始终与胞嘧啶配对时,两条链被认为是彼此相互补的,以及从其互补链的序列中可以推断出该链的序列。与此相应地,“错配”在本领域中意指在双链核酸中,对应位置上的碱基并未以互补的形式配对存在。The terms "complementary" or "reverse complement" are used interchangeably and have the meanings known to those skilled in the art, i.e., in a double-stranded nucleic acid molecule, the bases of one strand are paired with bases on the other strand in a complementary manner. In DNA, the purine base adenine (A) is always paired with the pyrimidine base thymine (T) (or uracil (U) in RNA); the purine base guanine (G) is always paired with the pyrimidine base cytosine (C). Each base pair includes a purine and a pyrimidine. When adenine on one strand is always paired with thymine (or uracil) on the other strand, and guanine is always paired with cytosine, the two strands are considered to be complementary to each other, and the sequence of the strand can be inferred from the sequence of its complementary strand. Accordingly, "mismatch" means in the art that in a double-stranded nucleic acid, the bases at corresponding positions are not paired in a complementary form.
术语“基本上反向互补”是指所涉及的两段核苷酸序列之间存在不多于3个的碱基错配,即所涉及的两段核苷酸序列之间存在1个、2个或3个的碱基错配;“完全互补”是指两段核苷酸序列之间不存在碱基错配。The term "substantially reverse complementary" means that there are no more than three base mismatches between the two nucleotide sequences involved, that is, there are 1, 2 or 3 base mismatches between the two nucleotide sequences involved; "completely complementary" means that there are no base mismatches between the two nucleotide sequences.
术语“互补”、“完全互补”和“基本上互补”可相对于在dsRNA的正义链与反义链之间,或dsRNA的反义链与靶标序列之间的碱基配对使用,如将从其使用的上下文理解。The terms "complementary," "fully complementary," and "substantially complementary" may be used with respect to base pairing between the sense and antisense strands of a dsRNA, or between the antisense strand of a dsRNA and a target sequence, as will be understood from the context of their use.
术语“抑制”,可以与“减少”、“沉默”、“下调”、“压制”和其他类似术语交替使用,并且包括任何水平的抑制。The term "inhibit" may be used interchangeably with "reduce," "silence," "downregulate," "suppress," and other similar terms, and includes any level of inhibition.
术语“抑制MARC1基因的表达”包括抑制任何MARC1基因(如例如小鼠MARC1基因、大鼠MARC1基因、猴MARC1基因、或人类MARC1基因)以及MARC1基因的变体(例如天然存在的变体)或突变体的表达。因此,该MARC1基因可以是野生型MARC1基因、突变MARC1基因、或在遗传操作的细胞、细胞群组或生物体的情形下的转基因MARC1基因。The term "inhibiting the expression of a MARC1 gene" includes inhibiting the expression of any MARC1 gene (such as, for example, a mouse MARC1 gene, a rat MARC1 gene, a monkey MARC1 gene, or a human MARC1 gene) and variants (such as naturally occurring variants) or mutants of a MARC1 gene. Thus, the MARC1 gene can be a wild-type MARC1 gene, a mutant MARC1 gene, or a transgenic MARC1 gene in the context of a genetically manipulated cell, cell group, or organism.
“抑制MARC1基因表达”包括任何水平的MARC1基因的抑制,例如至少部分抑制MARC1基因的表达,如抑制至少约5%、至少约10%、至少约15%、至少约20%、至少约25%、至少约30%、至少约35%、至少约40%、至少约45%、至少约50%、至少约55%、至少约60%、至少约65%、至少约70%、至少约75%、至少约80%、至少约85%、至少约90%、至少约91%、至少约92%、至少约93%、至少约94%、至少约95%、至少约96%、至少约97%、至少约98%、或至少约99%。"Inhibiting MARC1 gene expression" includes any level of inhibition of MARC1 gene, such as at least partial inhibition of MARC1 gene expression, such as inhibition of at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99%.
术语“各自独立地”是指结构中存在的取值范围相同或相近的至少两个基团(或环
系)可以在特定情形下具有相同或不同的含义。例如,取代基X和取代基Y各自独立地为氢、羟基、烷基或芳基,则当取代基X为氢时,取代基Y既可以为氢,也可以为羟基、烷基或芳基;同理,当取代基Y为氢时,取代基X既可以为氢,也可以为羟基、烷基或芳基。The term "independently" refers to at least two groups (or rings) in the structure that have the same or similar value ranges. The term "substituent" may have the same or different meanings in certain circumstances. For example, if substituent X and substituent Y are each independently hydrogen, hydroxyl, alkyl or aryl, then when substituent X is hydrogen, substituent Y may be either hydrogen, or hydroxyl, alkyl or aryl; similarly, when substituent Y is hydrogen, substituent X may be either hydrogen, or hydroxyl, alkyl or aryl.
术语“烷基”包括直链、支链或环状的饱和烷基。例如,烷基包括但不限于甲基、乙基、丙基、环丙基、正丁基、异丁基、仲丁基、叔丁基、环丁基、正戊基、环已基等类似基团。示例性的,“C1-6烷基”中的“C1-6”是指包含有1、2、3、4、5或6个碳原子的直链、支链或环状形式排列的基团。The term "alkyl" includes straight chain, branched or cyclic saturated alkyl groups. For example, alkyl groups include, but are not limited to, methyl, ethyl, propyl, cyclopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, cyclobutyl, n-pentyl, cyclohexyl and the like. Exemplarily, "C 1-6 " in "C 1-6 alkyl" refers to a group having 1, 2, 3, 4, 5 or 6 carbon atoms arranged in a straight chain, branched or cyclic form.
术语“烷氧基”在本文中是指烷基基团通过氧原子与分子其余部分相连(-O-烷基),其中所述烷基如本文中所定义。烷氧基的非限制性实例包括甲氧基、乙氧基、三氟甲氧基、二氟甲氧基、正丙氧基、异丙氧基、正丁氧基、叔丁氧基、正戊氧基等。The term "alkoxy" herein refers to an alkyl group attached to the remainder of the molecule via an oxygen atom (-O-alkyl), wherein the alkyl group is as defined herein. Non-limiting examples of alkoxy include methoxy, ethoxy, trifluoromethoxy, difluoromethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, n-pentoxy, and the like.
术语“治疗”是指:在罹患疾病之后,使受试者接触(例如给药)双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药、药物组合物,从而与不接触时相比使该疾病的症状减轻,并不意味着必需完全抑制疾病的症状。罹患疾病是指:身体出现了疾病症状。The term "treatment" means that after suffering from a disease, a subject is exposed to (e.g., administered) double-stranded RNA, a double-stranded RNA modified substance, a double-stranded RNA conjugate, a prodrug, or a pharmaceutical composition, thereby alleviating the symptoms of the disease compared to when the subject is not exposed to the disease, and does not necessarily mean that the symptoms of the disease are completely suppressed. Suffering from a disease means that the body has symptoms of the disease.
术语“预防”是指:在罹患疾病之前,通过使受试者接触(例如给药)本公开的双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药、药物组合物,从而与不接触时相比减轻罹患疾病后的症状,并不意味着必需完全抑制患病。The term "prevention" means that before a subject develops a disease, by contacting (e.g., administering) the double-stranded RNA, double-stranded RNA modified product, double-stranded RNA conjugate, prodrug, or pharmaceutical composition of the present disclosure, the symptoms after the subject develops the disease are alleviated compared to when the subject does not develop the disease. It does not mean that the disease must be completely suppressed.
术语“有效量”指本发明的双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药或药物组合物的这样的量或剂量,其以单一或多次剂量施用患者后,在需要治疗或预防的患者中产生预期效果。有效量可以由作为本领域技术人员的主治医师通过考虑以下多种因素来容易地确定:诸如哺乳动物的物种;它的大小、年龄和一般健康;涉及的具体疾病;疾病的程度或严重性;个体患者的应答;施用的具体抗体;施用模式;施用制剂的生物利用率特征;选择的给药方案;和任何伴随疗法的使用。The term "effective amount" refers to such an amount or dosage of the double-stranded RNA, double-stranded RNA modification, double-stranded RNA conjugate, prodrug or pharmaceutical composition of the present invention, which produces the desired effect in a patient in need of treatment or prevention after being administered to the patient in a single or multiple doses. The effective amount can be easily determined by the attending physician who is a person skilled in the art by considering a variety of factors such as the species of the mammal; its size, age and general health; the specific disease involved; the extent or severity of the disease; the response of the individual patient; the specific antibody administered; the mode of administration; the bioavailability characteristics of the administered formulation; the selected dosing regimen; and the use of any concomitant therapy.
术语“与MARC1基因异常表达相关的疾病”是与补体MARC1的参与相关联的疾病或障碍。术语“与MARC1基因异常表达相关的疾病”包括将从减少MARC1(即“MARC1-相关性疾病”)表达受益的疾病、障碍或病症。在一些实施方式中,MARC1基因异常表达相关的疾病选自由以下组成的组:肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征。示例性地,参考以下科学文献但不限于此:Emdin C.A.,Haas M.E.,Khera A.V.,et al.Amissense variant in Mitochondrial Amidoxime Reducing Component 1gene and protection against liver disease.PLoS Genet,2020,16(4):e1008629.;Ott G.,Reichmann D.,Boerger C.,et al.Functional characterization of protein variants encoded by nonsynonymous single nucleotide polymorphisms in MARC1 and MARC2 in healthy Caucasians.Drug Metab Dispos,2014,42:718–725.;Meroni M.,Longo M.,Tria G.,et al.Genetics is of the essence to face NAFLD.Biomedicines,2021,9:1359.;Parisinos C.A.,Wilman H.R.,Thomas E.L.,et al.Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.Journal of Hepatology,2020,73:241–251.;Du X.,DeForest N.,Majithia A.R.Human genetics to identify therapeutic targets for NAFLD:challenges and opportunities.Front.Endocrinol.2021,12:777075.;Bence K.K.,Birnbaum M.J.Metabolic drivers of non-alcoholic fatty liver disease.Journal of molmet,2020,101143.;Luukkonen P.K.,Juuti A.,Sammalkorpi H.,et al.MARC1 variant rs2642438increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans.Journal of Hepatology,2020,
73:696–739.;Trépo E.,Valenti L.Update on NAFLD genetics:from new variants to the clinic.Journal of Hepatology,2020,7634.;Sparacino-Watkins C.E.,Tejero J.,Sun B.,et al.Nitrite reductase and nitric-oxide synthase activity of the mitochondrial molybdopterin enzymes mARC1 and mARC2.The Journal of Biological Chemistry,2014,289(15):10345–10358.;Luukkonen,Panu K et al.“Distinct contributions of metabolic dysfunction and genetic risk factors in the pathogenesis of non-alcoholic fatty liver disease.”Journal of hepatology vol.76,3(2022):526-535.doi:10.1016/j.jhep.2021.10.013;Romeo,Stefano.“MARC1 and HNRNPUL1:Two Novel Players in Alcohol-related Liver Disease.”Gastroenterology vol.159,4(2020):1231-1232.doi:10.1053/j.gastro.2020.08.009;Rivera-Paredez,Berenice et al.“Association of MARC1,ADCY5,and BCO1 Variants with the Lipid Profile,Suggests an Additive Effect for Hypertriglyceridemia in Mexican Adult Men.”International journal of molecular sciences vol.23,19 11815.5Oct.2022,doi:10.3390/ijms231911815;Gao,Chuan et al.“Genome-wide association analysis of serum alanine and aspartate aminotransferase,and the modifying effects of BMI in 388k European individuals.”Genetic epidemiology vol.45,6(2021):664-681.doi:10.1002/gepi.22392。The term "disease associated with abnormal expression of the MARC1 gene" is a disease or disorder associated with the involvement of complement MARC1. The term "disease associated with abnormal expression of the MARC1 gene" includes diseases, disorders or conditions that will benefit from reducing the expression of MARC1 (i.e., "MARC1-related diseases"). In some embodiments, the disease associated with abnormal expression of the MARC1 gene is selected from the group consisting of: obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome. Exemplarily, reference is made to the following scientific literature but is not limited thereto: Emdin CA, Haas ME, Khera AV, et al. Amissense variant in Mitochondrial Amidoxime Reducing Component 1 gene and protection against liver disease. PLoS Genet, 2020, 16(4): e1008629.; Ott G., Reichmann D., Boerger C., et al. Functional characterization of protein variants encoded by nonsynonymous single nucleotide polymorphisms in MARC1 and MARC2 in healthy Caucasians. Drug Metab Dispos, 2014, 42: 718–725.; Meroni M., Longo M., Tria G., et al. Genetics is of the essence to face NAFLD. Biomedicines, 2021, 9: 1359.; Parisinos CA, Wilman HR, Thomas EL, et al. al.Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.Journal of Hepatology,2020,73:241–251.; Du MJ Metabolic drivers of non-alcoholic fatty liver disease. Journal of molmet, 2020, 101143.; Luukkonen PK, Juuti A., Sammalkorpi H., et al. MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans. Journal of Hepatology, 2020, 73:696–739.; Trépo E., Valenti L. Update on NAFLD genetics: from new variants to the clinic. Journal of Hepatology, 2020, 7634.; Sparacino-Watkins CE, Tejero J., Sun B., et al. mistry, 2014, 289(15):10345–10358.; Luukkonen, Panu K et al. "Distinct contributions of metabolic dysfunction and genetic risk factors in the pathogenesis of non-alcoholic fatty liver disease." Journal of hepatology vol.76,3(2022):526-535.doi:10.1016/j.jhep.2021.10.013; Romeo, Stefano. "MARC1 and HNRNPUL1: Two Novel Players in Alcohol-related Liver Disease." Gastroenterology vol.159,4(2020):1231-1232.doi:10.1053/ j.gastro.2020.08.009; Rivera-Paredez, Berenice et al. "Association of MARC1, ADCY5, and BCO1 Variants with the Lipid Profile, Suggests an Additive Effect for Hypertriglyceridemia in Mexican Adult Men." International journal of molecular sciences vol.23,19 11815.5Oct.2022,doi:10.3390/ijms231911815;Gao, Chuan et al. "Genome-wide association analysis of serum alanine and aspartate aminotransferase, and the modifying effects of BMI in 388k European individuals." Genetic epidemiology vol.45,6(2021):664-681.doi:10.1002/ge pi.22392.
术语“药学上可接受的辅料”或“药学上可接受的载体”是指在药物生产领域中广泛采用的辅助物料。使用辅料的主要目的在于提供一种使用安全、性质稳定和/或具有特定功能性的药物组合物,还在于提供一种方法,以便在为受试者施用药物之后,活性成分能够以所期望的速率溶出,或者促进活性成分在接受给药的受试者体内得到有效吸收。药学上可接受的辅料可以是具有惰性的填充剂,也可以是为药用组合物提供某种功能(例如稳定组合物的整体pH值或防止组合物中活性成分的降解)的功效成分。药学上可接受的辅料的非限制性实例包括但不限于粘合剂、助悬剂、乳化剂、稀释剂(或填充剂)、成粒剂、胶粘剂、崩解剂、润滑剂、抗粘着剂、助流剂、润湿剂、胶凝剂、吸收延迟剂、溶解抑制剂、增强剂、吸附剂、缓冲剂、螯合剂、防腐剂、着色剂、矫味剂、甜味剂等。The term "pharmaceutically acceptable excipient" or "pharmaceutically acceptable carrier" refers to auxiliary materials widely used in the field of drug production. The main purpose of using excipients is to provide a pharmaceutical composition that is safe to use, stable in nature and/or has specific functionality, and also to provide a method so that after the drug is administered to the subject, the active ingredient can be dissolved at a desired rate, or to promote the effective absorption of the active ingredient in the subject receiving the drug. Pharmaceutically acceptable excipients can be inert fillers or functional ingredients that provide a certain function to the pharmaceutical composition (for example, stabilizing the overall pH value of the composition or preventing the degradation of the active ingredient in the composition). Non-limiting examples of pharmaceutically acceptable excipients include, but are not limited to, binders, suspending agents, emulsifiers, diluents (or fillers), granulating agents, adhesives, disintegrants, lubricants, anti-adhesive agents, glidants, wetting agents, gelling agents, absorption delay agents, dissolution inhibitors, enhancers, adsorbents, buffers, chelating agents, preservatives, colorants, flavoring agents, sweeteners, etc.
本公开中的药物组合物可以使用本领域技术人员已知的任何方法来制备。例如,常规混合、溶解、造粒、乳化、磨细、包封、包埋和/或冻干工艺。The pharmaceutical compositions of the present disclosure can be prepared using any method known to those skilled in the art, such as conventional mixing, dissolving, granulating, emulsifying, pulverizing, encapsulating, embedding and/or lyophilizing processes.
在本公开中,施用途经能够以任何适用的方式进行变化或调整,以满足药物的性质、患者和医务人员的便利以及其它相关因素的需求。In the present disclosure, the route of administration can be varied or adjusted in any applicable manner to meet the requirements of the properties of the drug, the convenience of the patient and the medical staff, and other relevant factors.
本公开上下文中使用的术语“个体”、“患者”或“受试者”包括哺乳动物。哺乳动物包括但不限于,家养动物(例如,牛,羊,猫,狗和马),灵长类动物(例如,人和非人灵长类动物如猴),兔,以及啮齿类动物(例如,小鼠和大鼠)。The terms "individual", "patient" or "subject" used in the context of this disclosure include mammals. Mammals include, but are not limited to, domestic animals (e.g., cows, sheep, cats, dogs and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats).
本公开上下文中使用的术语“对应siRNA”是指前述提及的同一种siRNA,例如当述及“所述正义链包含本文表1、表1-1所示的任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链”时,是指所包含的正义链和反义链来自本文表1、表1-1所示的同一种siRNA,例如,当正义链包含5’-CCUACACAAAGGACCUACU-3’(SEQ ID NO:38)时,反义链包含5’-AGUAGGUCCUUUGUGUAGG-3’(SEQ ID NO:92)。类似地,术语“对应siRNA修饰物”是指前述提及的同一种siRNA修饰物,例如当述及“所述正义链包含本文表2所示的任意一种siRNA修饰物的正义链,所述反义链包含对应siRNA修饰物的反义链”时,是指所包含的正义链和反义链来自本文表2所示的同一种siRNA修饰物。类似地,术语“对应siRNA缀合物”是指前述提及的同一种siRNA缀合物,例如当述及“所述正义链包含本文表3所示的任意一种siRNA缀合物的正义链,所述反义链包含对应siRNA缀合物的反义链”时,是指所包含的正义链和反义链来自本文表3所示的同一种siRNA缀合物。另外,在这些上下文中,“包含”包括由这些序列组成的情况。The term “corresponding siRNA” used in the context of the present disclosure refers to the same siRNA mentioned above. For example, when it is stated that “the sense chain comprises the sense chain of any one siRNA shown in Table 1 and Table 1-1 herein, and the antisense chain comprises the antisense chain of the corresponding siRNA”, it means that the sense chain and antisense chain contained are from the same siRNA shown in Table 1 and Table 1-1 herein. For example, when the sense chain comprises 5’-CCUACACAAAGGACCUACU-3’(SEQ ID NO:38), the antisense chain comprises 5’-AGUAGGUCCUUUGUGUAGG-3’(SEQ ID NO:92). Similarly, the term “corresponding siRNA modifier” refers to the same siRNA modifier mentioned above. For example, when it is stated that “the sense chain comprises the sense chain of any one siRNA modifier shown in Table 2 herein, and the antisense chain comprises the antisense chain of the corresponding siRNA modifier”, it means that the sense chain and antisense chain contained are from the same siRNA modifier shown in Table 2 herein. Similarly, the term "corresponding siRNA conjugate" refers to the same siRNA conjugate mentioned above, for example, when it is mentioned that "the sense strand comprises the sense strand of any one siRNA conjugate shown in Table 3 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA conjugate", it means that the sense strand and antisense strand contained are from the same siRNA conjugate shown in Table 3 herein. In addition, in these contexts, "comprising" includes the case of being composed of these sequences.
除非另外定义或由背景清楚指示,否则在本公开中的全部技术与科学术语具有如本
公开所属领域的普通技术人员通常理解的相同含义。Unless otherwise defined or clearly indicated by the context, all technical and scientific terms used in this disclosure have the same meaning as herein. The same meanings as commonly understood by one of ordinary skill in the art are disclosed.
双链核糖核酸dsRNA
本公开的第一方面提供一种双链核糖核酸(dsRNA),用于抑制MARC1基因的表达。双链核糖核酸的一条链为反义链,反义链与靶基因(也即,MARC1基因)在表达过程中形成的mRNA序列互补配对,用于指导靶mRNA(也即,MARC1基因的转录产物)的切割。双链核糖核酸中另一条正义链包括与反义链部分互补和完全互补形成双链核糖核酸的双链区。The first aspect of the present disclosure provides a double-stranded ribonucleic acid (dsRNA) for inhibiting the expression of the MARC1 gene. One strand of the double-stranded ribonucleic acid is an antisense strand, which is complementary to the mRNA sequence formed during the expression of the target gene (i.e., the MARC1 gene) and is used to guide the cutting of the target mRNA (i.e., the transcription product of the MARC1 gene). The other sense strand in the double-stranded ribonucleic acid includes a double-stranded region that is partially complementary and completely complementary to the antisense strand to form the double-stranded ribonucleic acid.
在一些实施方案中,双链核糖核酸作为核酸内切酶(Dicer)的底物,被切割为小片段的dsRNA,也即siRNA。在一些实施方案中,双链核糖核酸为siRNA。siRNA通过装配形成RNA诱导的沉默复合物(RNA-induced silencing complex,RISC)RISC复合体,切割靶mRNA,抑制MARC1基因的表达。In some embodiments, the double-stranded RNA is used as a substrate for the endonuclease (Dicer) and is cut into small fragments of dsRNA, i.e., siRNA. In some embodiments, the double-stranded RNA is siRNA. siRNA assembles to form an RNA-induced silencing complex (RISC) RISC complex, cuts the target mRNA, and inhibits the expression of the MARC1 gene.
根据来源于人MARC1 mRNA(NM_022746.4)中的靶标序列,设计与靶mRNA结合的siRNA。在一些实施方案中,靶标序列选自如SEQ ID NO:1~9和812~817任一项所示的核苷酸序列。在一些更为具体的实施方案中,靶标序列选自如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列。According to the target sequence derived from human MARC1 mRNA (NM_022746.4), siRNA that binds to the target mRNA is designed. In some embodiments, the target sequence is selected from the nucleotide sequence shown in any one of SEQ ID NOs: 1 to 9 and 812 to 817. In some more specific embodiments, the target sequence is selected from the nucleotide sequence shown in any one of SEQ ID NOs: 10 to 37, 799 to 811, and 818 to 830.
在一些具体的实施方案中,SEQ ID NO:1所示的核苷酸序列包含SEQ ID NO:10~12和799~801所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:1 includes the nucleotide sequences shown in SEQ ID NO:10-12 and 799-801.
在一些具体的实施方案中,SEQ ID NO:2所示的核苷酸序列包含SEQ ID NO:13~16、802和803所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:2 includes the nucleotide sequences shown in SEQ ID NO:13-16, 802 and 803.
在一些具体的实施方案中,SEQ ID NO:3所示的核苷酸序列包含SEQ ID NO:17~20和804所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:3 includes the nucleotide sequences shown in SEQ ID NO:17-20 and 804.
在一些具体的实施方案中,SEQ ID NO:4所示的核苷酸序列包含SEQ ID NO:21~24、805和806所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:4 includes the nucleotide sequences shown in SEQ ID NO:21-24, 805 and 806.
在一些具体的实施方案中,SEQ ID NO:5所示的核苷酸序列包含SEQ ID NO:25~28所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:5 contains the nucleotide sequence shown in SEQ ID NO:25 to 28.
在一些具体的实施方案中,SEQ ID NO:6所示的核苷酸序列包含SEQ ID NO:29~30和807所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:6 includes the nucleotide sequences shown in SEQ ID NO:29-30 and 807.
在一些具体的实施方案中,SEQ ID NO:7所示的核苷酸序列包含SEQ ID NO:31~32和808所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:7 includes the nucleotide sequences shown in SEQ ID NO:31-32 and 808.
在一些具体的实施方案中,SEQ ID NO:8所示的核苷酸序列包含SEQ ID NO:33~35和809所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:8 includes the nucleotide sequences shown in SEQ ID NO:33-35 and 809.
在一些具体的实施方案中,SEQ ID NO:9所示的核苷酸序列包含SEQ ID NO:36~37810、811所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:9 includes the nucleotide sequences shown in SEQ ID NO:36~37810, 811.
在一些具体的实施方案中,SEQ ID NO:812所示的核苷酸序列包含SEQ ID NO:818和819所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:812 contains the nucleotide sequences shown in SEQ ID NO:818 and 819.
在一些具体的实施方案中,SEQ ID NO:813所示的核苷酸序列包含SEQ ID NO:820和821所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:813 contains the nucleotide sequences shown in SEQ ID NO:820 and 821.
在一些具体的实施方案中,SEQ ID NO:814所示的核苷酸序列包含SEQ ID NO:822和823所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:814 contains the nucleotide sequences shown in SEQ ID NO:822 and 823.
在一些具体的实施方案中,SEQ ID NO:815所示的核苷酸序列包含SEQ ID NO:824和825所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:815 contains the nucleotide sequences shown in SEQ ID NO:824 and 825.
在一些具体的实施方案中,SEQ ID NO:816所示的核苷酸序列包含SEQ ID NO:826~828所示的核苷酸序列。In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:816 contains the nucleotide sequence shown in SEQ ID NO:826-828.
在一些具体的实施方案中,SEQ ID NO:817所示的核苷酸序列包含SEQ ID NO:829和830所示的核苷酸序列。
In some specific embodiments, the nucleotide sequence shown in SEQ ID NO:817 includes the nucleotide sequences shown in SEQ ID NO:829 and 830.
在一些实施方案中,反义链包含与靶标序列中至少15个连续核苷酸的反向互补序列的差异不超过3个核苷酸的序列B。具体地,沿5’末端向3’末端的方向,在靶标序列中选择起始核苷酸,以包含起始核苷酸在内的向3’方向延伸的至少15个核苷酸作为siRNA的结合区域。反义链包含结合区域对应的核苷酸序列的反向互补序列。需要说明的是,起始核苷酸可以是靶标序列任意位置处的核苷酸,只要基于该起始核苷酸向靶标序列3’方向延伸,可以得到至少15个连续核苷酸(包含起始位置处的核苷酸)即可。In some embodiments, the antisense strand comprises a sequence B that differs by no more than 3 nucleotides from the reverse complementary sequence of at least 15 consecutive nucleotides in the target sequence. Specifically, along the direction from the 5' end to the 3' end, the starting nucleotide is selected in the target sequence, and at least 15 nucleotides extending in the 3' direction including the starting nucleotide are used as the binding region of the siRNA. The antisense strand comprises the reverse complementary sequence of the nucleotide sequence corresponding to the binding region. It should be noted that the starting nucleotide can be a nucleotide at any position of the target sequence, as long as at least 15 consecutive nucleotides (including the nucleotide at the starting position) can be obtained by extending in the 3' direction of the target sequence based on the starting nucleotide.
在本公开中,反义链的核苷酸序列与靶标序列可以是完全互补或基本上互补。当反义链的核苷酸序列与靶标序列基本上互补时,反义链的核苷酸序列中存在与靶标序列存在不超过3个的错配碱基。例如,错配碱基为1个、2个或3个。当反义链的核苷酸序列与靶标序列完全互补时,反义链的核苷酸序列与靶标序列不存在错配碱基。In the present disclosure, the nucleotide sequence of the antisense strand and the target sequence can be completely complementary or substantially complementary. When the nucleotide sequence of the antisense strand and the target sequence are substantially complementary, there are no more than 3 mismatched bases in the nucleotide sequence of the antisense strand and the target sequence. For example, the mismatched bases are 1, 2 or 3. When the nucleotide sequence of the antisense strand and the target sequence are completely complementary, there are no mismatched bases in the nucleotide sequence of the antisense strand and the target sequence.
进一步地,反义链由至少15个核苷酸组成。在一些实施方案中,反义链由15-28个核苷酸组成。例如,反义链的长度为15、16、17、18、19、20、21、22、23、24、25、26、27或28个核苷酸。Further, the antisense strand consists of at least 15 nucleotides. In some embodiments, the antisense strand consists of 15-28 nucleotides. For example, the length of the antisense strand is 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 or 28 nucleotides.
作为优选,反义链由19-25个核苷酸组成,更优选19-23个核苷酸,最优选19、21或23个核苷酸。Preferably, the antisense strand consists of 19-25 nucleotides, more preferably 19-23 nucleotides, most preferably 19, 21 or 23 nucleotides.
在一些可选的实施方案中,反义链包含的序列B与靶标序列上至少15个连续核苷酸组成的序列的反向互补序列相同。In some optional embodiments, the sequence B included in the antisense strand is identical to the reverse complementary sequence of a sequence consisting of at least 15 consecutive nucleotides on the target sequence.
在一些具体的实施方案中,反义链包含的序列B与靶标序列上15-28个连续核苷酸组成的序列的反向互补序列相同。优选靶标序列上19-25个连续核苷酸,更优选靶标序列19-23个连续核苷酸,最优选19、21或23个连续核苷酸。In some specific embodiments, the sequence B included in the antisense strand is identical to the reverse complementary sequence of a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides.
在一些可选的实施方案中,反义链包含的序列B与靶标序列上至少15个连续核苷酸组成的序列的反向互补序列存在1个核苷酸的差异。In some optional embodiments, the sequence B comprised in the antisense strand differs by 1 nucleotide from the reverse complementary sequence of a sequence consisting of at least 15 consecutive nucleotides on the target sequence.
在一些具体的实施方案中,反义链包含的序列B与靶标序列上15-28个核苷酸组成的序列的反向互补序列存在1个核苷酸的差异。优选靶标序列上19-25个连续核苷酸,更优选靶标序列上19-23个连续核苷酸,最优选19、21或23个连续核苷酸。In some specific embodiments, the sequence B included in the antisense strand differs by 1 nucleotide from the reverse complementary sequence of a sequence consisting of 15-28 nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides.
在一些具体的实施方案中,存在差异的核苷酸位于序列B的3’末端。在另一些具体的实施方案中,存在差异的核苷酸位于序列B的5’末端。In some specific embodiments, the different nucleotides are located at the 3' end of sequence B. In other specific embodiments, the different nucleotides are located at the 5' end of sequence B.
在一些实施方案中,所述正义链包含与靶标序列中至少15个连续核苷酸的差异不超过3个核苷酸的序列A。正义链中包括与反义链互补的区域,正义链的核苷酸序列与反义链在靶标序列上结合区域的序列完全相同或基本完全相同。因此,正义链的核苷酸序列为靶标序列中结合反义链的至少15个连续核苷酸;或者,正义链的核苷酸序列与靶标序列中结合反义链的至少15个连续核苷酸相比,存在1个、2个或3个碱基不同的差异核苷酸。In some embodiments, the sense strand comprises a sequence A that differs by no more than 3 nucleotides from at least 15 consecutive nucleotides in the target sequence. The sense strand includes a region complementary to the antisense strand, and the nucleotide sequence of the sense strand is identical or substantially identical to the sequence of the region where the antisense strand binds to the target sequence. Therefore, the nucleotide sequence of the sense strand is at least 15 consecutive nucleotides in the target sequence that bind to the antisense strand; or, the nucleotide sequence of the sense strand is compared with at least 15 consecutive nucleotides in the target sequence that bind to the antisense strand, and there are 1, 2, or 3 different nucleotides in the nucleotide sequence of the sense strand.
进一步地,正义链由至少15个核苷酸组成。在一些实施方案中,正义链由15-28个核苷酸组成。例如,正义链的长度为15、16、17、18、19、20、21、22、23、24、25、26、27或28个核苷酸。Further, the sense strand is composed of at least 15 nucleotides. In some embodiments, the sense strand is composed of 15-28 nucleotides. For example, the length of the sense strand is 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 or 28 nucleotides.
作为优选,正义链由19-25个核苷酸组成,更优选19-23个核苷酸,最优选19、21或23个核苷酸。Preferably, the sense strand consists of 19-25 nucleotides, more preferably 19-23 nucleotides, most preferably 19, 21 or 23 nucleotides.
在一些可选的实施方案中,正义链包含的序列A与靶标序列上至少15个连续核苷酸组成的序列相同。In some optional embodiments, the sequence A included in the sense strand is identical to a sequence consisting of at least 15 consecutive nucleotides in the target sequence.
在一些具体的实施方案中,正义链包含的序列A与靶标序列上15-28个连续核苷酸组成的序列相同。优选靶标序列上19-25个连续核苷酸,更优选靶标序列上19-23个连续核苷酸,最优选靶标序列上19、21或23个连续核苷酸。In some specific embodiments, the sequence A included in the sense strand is identical to a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides on the target sequence.
在一些可选的实施方案中,正义链包含的序列A与靶标序列上至少15个连续核苷酸组成的序列存在1个核苷酸的差异。
In some optional embodiments, the sequence A included in the sense strand differs by 1 nucleotide from a sequence consisting of at least 15 consecutive nucleotides in the target sequence.
在一些具体的实施方案中,正义链包含的序列A与靶标序列上15-28个连续核苷酸组成的序列存在1个核苷酸的差异。优选靶标序列上19-25个连续核苷酸,更优选靶标序列上19-23个连续核苷酸,最优选靶标序列上19、21或23个连续核苷酸。In some specific embodiments, the sequence A included in the sense strand differs by 1 nucleotide from a sequence consisting of 15-28 consecutive nucleotides on the target sequence, preferably 19-25 consecutive nucleotides on the target sequence, more preferably 19-23 consecutive nucleotides on the target sequence, and most preferably 19, 21 or 23 consecutive nucleotides on the target sequence.
在一些具体的实施方案中,存在差异的核苷酸位于序列A的3’末端。在另一些具体的实施方案中,存在差异的核苷酸位于序列A的5’末端。In some specific embodiments, the different nucleotides are located at the 3' end of sequence A. In other specific embodiments, the different nucleotides are located at the 5' end of sequence A.
在本公开中,正义链的长度与反义链长度可以相同或不同。In the present disclosure, the length of the sense strand and the length of the antisense strand may be the same or different.
在一些实施方式中,正义链与反义链的长度相同,具体地,正义链/反义链的长度比为15/15、16/16、17/17、18/18、19/19、20/20、21/21、22/22、23/23、24/24、25/25、26/26、27/27或28/28。作为优选,正义链/反义链的长度比为19/19、20/20、21/21、22/22、23/23、24/24或25/25,更优选19/19、20/20、21/21、22/22或23/23,最优选19/19、21/21或23/23。In some embodiments, the sense strand and the antisense strand are the same length, specifically, the sense strand/antisense strand length ratio is 15/15, 16/16, 17/17, 18/18, 19/19, 20/20, 21/21, 22/22, 23/23, 24/24, 25/25, 26/26, 27/27 or 28/28. Preferably, the sense strand/antisense strand length ratio is 19/19, 20/20, 21/21, 22/22, 23/23, 24/24 or 25/25, more preferably 19/19, 20/20, 21/21, 22/22 or 23/23, and most preferably 19/19, 21/21 or 23/23.
在一些实施方式中,正义链与反义链的长度不同。例如,正义链/反义链的长度比为19/20、19/21、19/22、19/23、19/24、19/25、19/26、20/19、20/21、20/22、20/23、20/24、20/25、20/26、21/19、21/20、21/22、21/23、21/24、21/25、21/26、22/19、22/20、22/21、22/23、22/24、22/25、22/26、23/19、23/20、23/21、23/22、23/24、23/25或23/26等等;在一些优选的实施方式中,正义链/反义链的长度比为19/21、20/22或21/23。In some embodiments, the sense strand is different from the antisense strand in length. For example, the sense strand/antisense strand length ratio is 19/20, 19/21, 19/22, 19/23, 19/24, 19/25, 19/26, 20/19, 20/21, 20/22, 20/23, 20/24, 20/25, 20/26, 21/19, 21/20, 21/22, 21/23, 21/24, 21/25 , 21/26, 22/19, 22/20, 22/21, 22/23, 22/24, 22/25, 22/26, 23/19, 23/20, 23/21, 23/22, 23/24, 23/25 or 23/26, etc.; in some preferred embodiments, the length ratio of the sense strand/antisense strand is 19/21, 20/22 or 21/23.
在本公开中,正义链与反义链可以是完全互补或基本上互补,当两者基本上互补时,正义链与反义链形成的双链区内存在不超过3个错配碱基。In the present disclosure, the sense strand and the antisense strand may be completely complementary or substantially complementary. When the two are substantially complementary, there are no more than 3 mismatched bases in the double-stranded region formed by the sense strand and the antisense strand.
在一些实施方案中,正义链与反义链互补形成双链区后,正义链、反义链或其组合具有延伸出所述双链区的突出的核苷酸。突出的核苷酸的数量可以是1个或多个,例如,1个或2个。另外,突出1-2个核苷酸可以位于任意反义链或正义链的5’末端、3’末端或两端,并且,每一个突出的核苷酸可以是任意类型的核苷酸。In some embodiments, after the sense strand and the antisense strand complement each other to form a double-stranded region, the sense strand, the antisense strand, or a combination thereof has protruding nucleotides extending out of the double-stranded region. The number of protruding nucleotides may be 1 or more, for example, 1 or 2. In addition, the protruding 1-2 nucleotides may be located at the 5' end, 3' end, or both ends of any antisense strand or sense strand, and each protruding nucleotide may be any type of nucleotide.
在一些实施方案中,所述正义链与所述反义链互补形成所述双链区,且所述正义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述反义链的3’末端形成平末端。In some embodiments, the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' end of the sense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the antisense strand forms a blunt end.
在一些实施方案中,所述正义链与所述反义链互补形成所述双链区,且所述反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述正义链的3’末端形成平末端。In some embodiments, the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the sense strand forms a blunt end.
在一些实施方案中,所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均具有1-2个延伸出所述双链区的突出的核苷酸。In some embodiments, the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand each have 1-2 protruding nucleotides extending out of the double-stranded region.
在一些实施方案中,所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均形成平末端。In some embodiments, the sense strand and the antisense strand are complementary to each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand both form blunt ends.
在一些具体的实施方式中,所述正义链包含如SEQ ID NO:38~91、411~497、499~502任一项所示的核苷酸序列,所述反义链包含如SEQ ID NO:92~145、503~589、591~594任一项所示的核苷酸序列。In some specific embodiments, the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 38 to 91, 411 to 497, 499 to 502, and the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 92 to 145, 503 to 589, 591 to 594.
在一些具体的实施方式中,所述正义链包含如SEQ ID NO:146~183任一项所示的核苷酸序列,所述反义链包含如SEQ ID NO:184~221任一项所示的核苷酸序列。In some specific embodiments, the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 146 to 183, and the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 184 to 221.
在一些具体的实施方案中,双链核糖核酸选自如表1或表1-1中所示的任一siRNA。在一些具体的实施方案中,本公开的siRNA对MARC1基因的抑制率至少为约20%,可以至少为约25%、约30%、约35%、约40%、约45%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%、约94%、约95%、约96%、约97%、约98%、约99%,或这些数值任意二者之间的数值或范围。In some specific embodiments, the double-stranded RNA is selected from any siRNA as shown in Table 1 or Table 1-1. In some specific embodiments, the inhibition rate of the siRNA disclosed herein on the MARC1 gene is at least about 20%, and can be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values.
本公开提供的siRNA,其与靶mRNA(MARC1 mRNA)结合的特异性高,具有较好的靶mRNA的沉默活性,可以显著抑制MARC1基因表达,用于治疗包括肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征以及其他尚未鉴定的相关病症、病理或综合征等在内的MARC1相关的疾病。
The siRNA provided by the present disclosure has high specificity in binding to the target mRNA (MARC1 mRNA), has good silencing activity of the target mRNA, can significantly inhibit the expression of the MARC1 gene, and is used to treat MARC1-related diseases including obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, as well as other related diseases, pathologies or syndromes that have not yet been identified.
在一些实施方案中,本公开提供了一种siRNA组合物,其包含表1或表1-1中所示siRNA中的任意一种或两种以上的组合。In some embodiments, the present disclosure provides a siRNA composition comprising any one or a combination of two or more of the siRNAs shown in Table 1 or Table 1-1.
在一些实施方案中,正义链的每个核苷酸彼此独立地为修饰的核苷酸或未修饰的核苷酸。在一些实施方案中,反义链的每个核苷酸彼此独立地为修饰的核苷酸或未修饰的核苷酸。In some embodiments, each nucleotide of the sense strand is independently a modified nucleotide or an unmodified nucleotide. In some embodiments, each nucleotide of the antisense strand is independently a modified nucleotide or an unmodified nucleotide.
在一些实施方案中,正义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接。在一些实施方案中,反义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接。In some embodiments, any two nucleotides connected in the sense strand are connected by a phosphodiester bond or a phosphorothioate diester bond. In some embodiments, any two nucleotides connected in the antisense strand are connected by a phosphodiester bond or a phosphorothioate diester bond.
在一些实施方案中,所述反义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团,或连接5’磷酸基团或5’磷酸衍生基团。In some embodiments, the 5' terminal nucleotide of the antisense strand is not linked to a 5' phosphate group or a 5' phosphate-derived group, or is linked to a 5' phosphate group or a 5' phosphate-derived group.
在本文中,反义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团时,该5’末端核苷酸的结构如式X所示:
Herein, when the 5' terminal nucleotide of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group, the structure of the 5' terminal nucleotide is as shown in Formula X:
Herein, when the 5' terminal nucleotide of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group, the structure of the 5' terminal nucleotide is as shown in Formula X:
其中,Base表示碱基,例如A、U、G、C或T;R为羟基或被本领域技术人员所知晓的各类基团所取代,例如,R可以为2’-氟代(2’-F)、2’-烷氧基、2’-取代的烷氧基、2’-烷基、2’-取代的烷基、2’-氨基、2’-取代的氨基、2’-脱氧核苷酸。Wherein, Base represents a base, such as A, U, G, C or T; R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
示例性的,5’磷酸基团的结构为:5’磷酸衍生基团的结构包括但不限于:等。Exemplarily, the structure of the 5' phosphate group is: The structures of the 5' phosphate derivative group include but are not limited to: wait.
位于反义链的5’末端核苷酸连接5’磷酸基团或5’磷酸衍生基团后,形成如下所示结构:The 5' terminal nucleotide of the antisense strand is connected to a 5' phosphate group or a 5' phosphate derivative group to form the following structure:
其中,Base表示碱基,例如A、U、G、C或T;R’为羟基或被本领域技术人员所知晓的各类基团所取代,例如,2’-氟代(2’-F)修饰的核苷酸,2’-烷氧基修饰的核苷酸,2’-取代的烷氧基修饰的核苷酸,2’-烷基修饰的核苷酸,2’-取代的烷基修饰的核苷酸,2’-脱氧核糖核苷酸。 Wherein, Base represents a base, such as A, U, G, C or T; R' is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, 2'-fluoro (2'-F) modified nucleotides, 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-deoxyribonucleotides.
双链核糖核酸修饰物Double-stranded RNA modification
本公开的第二方面提供一种双链核糖核酸修饰物。进一步地,双链核糖核酸修饰物为siRNA修饰物。siRNA修饰物在保持较高MARC1 mRNA抑制活性的同时,可提高siRNA的稳定性。The second aspect of the present disclosure provides a double-stranded RNA modification. Further, the double-stranded RNA modification is a siRNA modification. The siRNA modification can improve the stability of siRNA while maintaining a high MARC1 mRNA inhibitory activity.
在一些实施方案中,双链核糖核酸修饰物包含至少一个核苷酸的修饰。核苷酸的修饰选自核糖基团的修饰和碱基的修饰中的至少一种。在一些实施方案中,“核苷酸的修饰”是指核苷酸的核糖基团2’位羟基被其他基团取代形成的核苷酸或核苷酸衍生物,或者核苷酸上的碱基是经修饰的碱基的核苷酸。所述核苷酸的修饰不会导致siRNA抑制基因表
达的功能明显削弱或丧失。例如,可以选择J.K.Watts,G.F.Deleavey,and M.J.Damha,Chemically modified siRNA:tools and applications.Drug Discov Today,2008,13(19-20):842-55中公开的修饰的核苷酸。通过核苷酸的修饰可以提高siRNA的稳定性,并保持其对MARC1基因的高抑制效率。In some embodiments, the double-stranded RNA modification comprises at least one modification of a nucleotide. The modification of the nucleotide is selected from at least one of the modification of the ribose group and the modification of the base. In some embodiments, "modification of the nucleotide" refers to a nucleotide or a nucleotide derivative formed by replacing the 2' hydroxyl group of the ribose group of the nucleotide with other groups, or a nucleotide in which the base on the nucleotide is a modified base. The modification of the nucleotide does not cause the siRNA to inhibit gene expression. The function of the siRNA is significantly weakened or lost. For example, the modified nucleotides disclosed in JK Watts, GF Deleavey, and MJ Damha, Chemically modified siRNA: tools and applications. Drug Discov Today, 2008, 13 (19-20): 842-55 can be selected. The stability of the siRNA can be improved by modifying the nucleotides, and its high inhibition efficiency on the MARC1 gene can be maintained.
示例性的,修饰的核苷酸具有如下所示结构:Exemplarily, the modified nucleotide has the structure shown below:
其中,Base表示碱基,例如A、U、G、C或T。核糖基团2’位的羟基被R取代。这些核糖基2’位的羟基可以为本领域技术人员所知晓的各类基团所取代,例如,2’-氟代(2’-F)修饰的核苷酸,2’-烷氧基修饰的核苷酸,2’-取代的烷氧基修饰的核苷酸,2’-烷基修饰的核苷酸,2’-取代的烷基修饰的核苷酸,2’-脱氧核糖核苷酸。 Wherein, Base represents a base, such as A, U, G, C or T. The hydroxyl group at the 2' position of the ribose group is substituted by R. The hydroxyl group at the 2' position of these ribose groups can be substituted by various groups known to those skilled in the art, for example, 2'-fluoro (2'-F) modified nucleotides, 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-deoxyribonucleotides.
在一些实施方案中,2’-烷氧基修饰的核苷酸为2’-甲氧基(2’-OMe,2’-O-CH3)修饰的核苷酸等等。In some embodiments, the 2'-alkoxy modified nucleotide is a 2'-methoxy (2'-OMe, 2'-O-CH 3 ) modified nucleotide, and the like.
在一些实施方案中,2’-取代的烷氧基修饰的核苷酸为2’-甲氧基乙氧基(2’-O-CH2-CH2-O-CH3)修饰的核苷酸,2’-O-CH2-CH=CH2修饰的核苷酸等。In some embodiments, the 2'-substituted alkoxy modified nucleotide is a 2'-methoxyethoxy (2'-O-CH 2 -CH 2 -O-CH 3 ) modified nucleotide, a 2'-O-CH 2 -CH=CH 2 modified nucleotide, and the like.
在一些实施方案中,2’-取代的烷基修饰的核苷酸为2’-CH2-CH2-CH=CH2修饰的核苷酸等等。In some embodiments, the 2'-substituted alkyl modified nucleotide is a 2'- CH2 - CH2 -CH= CH2 modified nucleotide and the like.
在一些实施方案中,核苷酸的修饰是碱基的修饰。碱基的修饰可以是本领域技术人员所知晓的各类型修饰。示例性的,碱基的修饰包括但不限于m6A、Ψ、m1A、m5A、ms2i6A、i6A、m3C、m5C、ac4C、m7G、m2,2G、m2G、m1G、Q、m5U、mcm5U、ncm5U、ncm5Um、D、mcm5s2U、Inosine(I)、hm5C、s4U、s2U、偶氮苯、Cm、Um、Gm、t6A、yW、ms2t6A或其衍生物。In some embodiments, the modification of the nucleotide is the modification of the base. The modification of the base can be various types of modifications known to those skilled in the art. Exemplary, the modification of the base includes but is not limited to m 6 A, Ψ, m 1 A, m 5 A, ms 2 i 6 A, i 6 A, m 3 C, m 5 C, ac 4 C, m 7 G, m 2,2 G, m 2 G, m 1 G, Q, m 5 U, mcm 5 U, ncm 5 U, ncm 5 Um, D, mcm 5 s 2 U, Inosine (I), hm 5 C, s 4 U, s 2 U, azobenzene, Cm, Um, Gm, t 6 A, yW, ms 2 t 6 A or its derivatives.
在一些实施方案中,核苷酸衍生物是指能够在核酸中代替核苷酸,但结构不同于腺嘌呤核糖核苷酸、鸟嘌呤核糖核苷酸、胞嘧啶核糖核苷酸、尿嘧啶核糖核苷酸或胸腺嘧啶脱氧核糖核苷酸的化合物。在一些实施方案中,核苷酸衍生物可以是异核苷酸、桥联的核苷酸(bridged nucleic acid,简称BNA)或无环核苷酸。BNA是指受约束的或不能接近的核苷酸。BNA可以含有五元环、六元环、或七元环的具有“固定的”C3’-内切糖缩拢的桥联结构。通常将该桥掺入到该核糖的2’-、4’-位处以提供一个2’,4’-BNA核苷酸,如LNA、ENA、cET等。In some embodiments, a nucleotide derivative refers to a compound that can replace a nucleotide in a nucleic acid but has a structure different from adenine ribonucleotide, guanine ribonucleotide, cytosine ribonucleotide, uracil ribonucleotide or thymine deoxyribonucleotide. In some embodiments, a nucleotide derivative can be an isonucleotide, a bridged nucleotide (BNA for short) or an acyclic nucleotide. BNA refers to a constrained or inaccessible nucleotide. BNA can contain a five-membered ring, a six-membered ring, or a seven-membered ring with a "fixed" C3'-endosugar condensed bridge structure. The bridge is usually incorporated into the 2'-, 4'-position of the ribose to provide a 2',4'-BNA nucleotide, such as LNA, ENA, cET, etc.
LNA如式(1)所示,ENA如式(2)所示,cET如式(3)所示:
LNA is shown in formula (1), ENA is shown in formula (2), and cET is shown in formula (3):
LNA is shown in formula (1), ENA is shown in formula (2), and cET is shown in formula (3):
无环核苷酸是核苷酸的糖环被打开形成的一类核苷酸,如解锁核酸(UNA)或甘油核酸(GNA),其中,UNA如式(4)所示,GNA如式(5)所示:
Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of a nucleotide, such as unlocked nucleic acid (UNA) or glycerol nucleic acid (GNA), wherein UNA is shown in formula (4) and GNA is shown in formula (5):
Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of a nucleotide, such as unlocked nucleic acid (UNA) or glycerol nucleic acid (GNA), wherein UNA is shown in formula (4) and GNA is shown in formula (5):
上述式(4)和式(5)中,R选自H、OH或烷氧基(O-烷基)。In the above formula (4) and formula (5), R is selected from H, OH or alkoxy (O-alkyl).
在一些实施方案中,核苷酸衍生物修饰是指核酸中的核苷酸被替代为核苷酸衍生物。示例性的,核苷酸衍生物选自异核苷酸、LNA、ENA、cET、UNA或GNA。In some embodiments, the nucleotide derivative modification refers to that the nucleotide in the nucleic acid is replaced by a nucleotide derivative. Exemplarily, the nucleotide derivative is selected from isonucleotides, LNA, ENA, cET, UNA or GNA.
在一些实施方案中,核酸中的核苷酸被替代为异核苷酸,在本公开的上下文中,也称之为异核苷修饰。在一些实施方案中,异核苷修饰包括在欲修饰的siRNA的正义链和/或反义链的一个或多个位点掺入异核苷,以代替天然核苷在相应位置进行偶联。In some embodiments, the nucleotides in the nucleic acid are replaced with isonucleotides, which are also referred to as isonucleoside modifications in the context of the present disclosure. In some embodiments, isonucleoside modifications include incorporating isonucleosides at one or more sites of the sense strand and/or antisense strand of the siRNA to be modified to replace natural nucleosides for coupling at the corresponding positions.
在一些实施方案中,异核苷修饰采用D-异核苷修饰。在另一些实施方案中,异核苷修饰采用L-异核苷修饰。在又一些实施方案中,异核苷修饰采用D-异核苷修饰和L-异核苷修饰。In some embodiments, the isonucleoside modification adopts D-isonucleoside modification. In other embodiments, the isonucleoside modification adopts L-isonucleoside modification. In still other embodiments, the isonucleoside modification adopts D-isonucleoside modification and L-isonucleoside modification.
在一些实施方案中,双链核糖核酸修饰物包含至少一个位置处的磷酸二酯键的修饰。在一些实施方式中,磷酸二酯键的修饰是指磷酸二酯键中至少一个氧原子被硫原子取代形成硫代磷酸二酯键。硫代磷酸二酯键可以稳定siRNA的双链结构,保持碱基配对的特异性。示例性的,硫代磷酸二酯键结构如下所示:
In some embodiments, the double-stranded RNA modification comprises a modification of the phosphodiester bond at at least one position. In some embodiments, the modification of the phosphodiester bond refers to the replacement of at least one oxygen atom in the phosphodiester bond by a sulfur atom to form a thiophosphate diester bond. The thiophosphate diester bond can stabilize the double-stranded structure of the siRNA and maintain the specificity of base pairing. Exemplary, the thiophosphate diester bond structure is shown below:
In some embodiments, the double-stranded RNA modification comprises a modification of the phosphodiester bond at at least one position. In some embodiments, the modification of the phosphodiester bond refers to the replacement of at least one oxygen atom in the phosphodiester bond by a sulfur atom to form a thiophosphate diester bond. The thiophosphate diester bond can stabilize the double-stranded structure of the siRNA and maintain the specificity of base pairing. Exemplary, the thiophosphate diester bond structure is shown below:
在一些实施方案中,双链核糖核酸修饰物包含如下至少一种的化学修饰:In some embodiments, the double-stranded RNA modification comprises at least one of the following chemical modifications:
(1)正义链中至少一个核苷酸的修饰,(1) modification of at least one nucleotide in the sense strand,
(2)正义链中至少一个位置处的磷酸二酯键的修饰,(2) modification of the phosphodiester bond at at least one position in the sense strand,
(3)反义链中至少一个核苷酸的修饰,(3) modification of at least one nucleotide in the antisense strand,
(4)反义链中至少一个位置处的磷酸二酯键的修饰。(4) Modification of the phosphodiester bond at at least one position in the antisense strand.
进一步地,双链核糖核酸修饰物是包含(1)-(4)中至少一种化学修饰的siRNA修饰物。Furthermore, the double-stranded RNA modification product is a siRNA modification product comprising at least one chemical modification among (1) to (4).
在本公开中,正义链中的序列A与反义链中的序列B互补形成双链区后,序列A与序列B的3’末端可以为如下任意一种所示:In the present disclosure, after sequence A in the sense strand and sequence B in the antisense strand complement each other to form a double-stranded region, the 3' ends of sequence A and sequence B can be any of the following:
(1)序列A与序列B的3’末端均形成平末端;(1) The 3' ends of sequence A and sequence B are both blunt-ended;
(2)序列A的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,且序列B的3’末端形成平末端;(2) The 3' end of sequence A has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of sequence B forms a blunt end;
(3)序列B的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,且序列A的3’末端形成平末端;(3) The 3' end of sequence B has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of sequence A forms a blunt end;
(4)序列A的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,且序列B的3’末端具有1-2个延伸出所述双链区的突出的核苷酸。(4) The 3’ end of sequence A has 1-2 protruding nucleotides extending beyond the double-stranded region, and the 3’ end of sequence B has 1-2 protruding nucleotides extending beyond the double-stranded region.
在一些实施方案中,正义链的核苷酸序列为序列A所示的序列,反义链的核苷酸序列为序列B所示的序列。In some embodiments, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B.
在一些实施方案中,当正义链与反义链的核苷酸序列互补形成双链区后,正义链与反义链的3’末端不存在突出的核苷酸时,在正义链和反义链中至少一条链的3’末端添加1-2个核苷酸,作为突出的核苷酸。其中,连接于正义链的3’末端的1-2个核苷酸组成序
列D,连接于反义链的3’末端的1-2个核苷酸组成序列E。相应地,正义链的核苷酸序列为序列A连接序列D所示的序列,反义链的核苷酸序列为序列B连接序列E所示的序列。或者,正义链的核苷酸序列为序列A所示的序列,反义链的核苷酸序列为序列B连接序列E所示的序列。或者,正义链的核苷酸序列为序列A连接序列D所示的序列,反义链的核苷酸序列为序列B所示的序列。In some embodiments, when the nucleotide sequences of the sense strand and the antisense strand complement each other to form a double-stranded region, if there are no protruding nucleotides at the 3' end of the sense strand and the antisense strand, 1-2 nucleotides are added to the 3' end of at least one of the sense strand and the antisense strand as protruding nucleotides. Column D, 1-2 nucleotides connected to the 3' end of the antisense strand constitute sequence E. Accordingly, the nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E. Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E. Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B.
示例性的,在正义链的3’末端添加2个脱氧核糖核苷酸(TT)作为序列D,在反义链的3’末端添加2个脱氧核糖核苷酸(TT)作为序列E。或者,仅在反义链的3’末端添加2个脱氧核糖核苷酸(TT)作为序列E。或者,仅在正义链的3’末端添加2个脱氧核糖核苷酸(TT)作为序列D。Exemplarily, two deoxyribonucleotides (TT) are added to the 3' end of the sense strand as sequence D, and two deoxyribonucleotides (TT) are added to the 3' end of the antisense strand as sequence E. Alternatively, two deoxyribonucleotides (TT) are added only to the 3' end of the antisense strand as sequence E. Alternatively, two deoxyribonucleotides (TT) are added only to the 3' end of the sense strand as sequence D.
在一些实施方案中,当正义链与反义链的核苷酸序列互补形成双链区后,正义链的3’末端不存在突出的核苷酸时,在正义链的3’末端添加由1-2个核苷酸组成的序列D,作为突出的核苷酸。然后,当序列A连接序列D形成的核苷酸序列在完成化学修饰后,排除由1-2个核苷酸组成的序列D。相应地,在双链核糖核酸修饰物中,正义链的核苷酸序列为序列A所示的序列,反义链的核苷酸序列为序列B所示的序列。或者,在双链核糖核酸修饰物中,正义链的核苷酸序列为序列A所示的序列,反义链的核苷酸序列为序列B连接序列E所示的序列。在一些实施方案中,当序列A在与序列B互补形成双链区后,序列A的3’末端具有延伸出双链区的突出的1-2个核苷酸时,将序列A中位于3’末端的突出的核苷酸排除后作为正义链的核苷酸序列。排除掉3’末端的突出的核苷酸的序列称为序列A’。相应地,双链核糖核酸修饰物的正义链的核苷酸序列为序列A’所示的序列,双链核糖核酸修饰物的反义链的核苷酸序列为序列B所示的序列。或者,双链核糖核酸修饰物的正义链的核苷酸序列为序列A’所示的序列,双链核糖核酸修饰物的反义链的核苷酸序列为序列B连接序列E所示的序列。In some embodiments, when the nucleotide sequences of the sense strand and the antisense strand complement each other to form a double-stranded region, if there is no protruding nucleotide at the 3' end of the sense strand, a sequence D consisting of 1-2 nucleotides is added to the 3' end of the sense strand as the protruding nucleotide. Then, after the chemical modification is completed, the nucleotide sequence formed by connecting sequence A and sequence D is excluded. Accordingly, in the double-stranded RNA modified substance, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B. Alternatively, in the double-stranded RNA modified substance, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E. In some embodiments, when sequence A has 1-2 protruding nucleotides extending out of the double-stranded region at the 3' end of sequence A after complementing sequence B to form a double-stranded region, the protruding nucleotides at the 3' end of sequence A are excluded as the nucleotide sequence of the sense strand. The sequence excluding the protruding nucleotides at the 3' end is called sequence A'. Accordingly, the nucleotide sequence of the sense strand of the double-stranded RNA modification is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand of the double-stranded RNA modification is the sequence shown in sequence B. Alternatively, the nucleotide sequence of the sense strand of the double-stranded RNA modification is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand of the double-stranded RNA modification is the sequence shown in sequence B connected with sequence E.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的正义链包括如下修饰:正义链中第7位、第9位、第10位和第11位的核糖核苷酸为2’-氟代修饰的核糖核苷酸;正义链中其他位置的核糖核苷酸为2’-甲氧基修饰的核糖核苷酸。In some embodiments, along the 5' end to the 3' end direction, the sense strand of the siRNA modifier includes the following modifications: the ribonucleotides at positions 7, 9, 10 and 11 in the sense strand are 2'-fluoro-modified ribonucleotides; the ribonucleotides at other positions in the sense strand are 2'-methoxy-modified ribonucleotides.
在本文中,正义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团结构如式X所示:
In this context, the 5' terminal nucleotide of the sense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group structure as shown in Formula X:
In this context, the 5' terminal nucleotide of the sense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group structure as shown in Formula X:
其中,Base表示碱基,例如A、U、G、C或T;R为羟基或被本领域技术人员所知晓的各类基团所取代,例如,R可以为2’-氟代(2’-F)、2’-烷氧基、2’-取代的烷氧基、2’-烷基、2’-取代的烷基、2’-氨基、2’-取代的氨基、2’-脱氧核苷酸。Wherein, Base represents a base, such as A, U, G, C or T; R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
示例性的,5’磷酸基团的结构为:5’磷酸衍生基团的结构包括但不限于:等。Exemplarily, the structure of the 5' phosphate group is: The structures of the 5' phosphate derivative group include but are not limited to: wait.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的正义链包括如下所示位置处的硫代磷酸二酯键:5’末端起始的第1个核苷酸与第2个核苷酸之间,5’末端起始的第2个核苷酸与第3个核苷酸之间,3’末端起始的第1个核苷酸与第2个核苷酸之间,
以及3’末端起始的第2个核苷酸与第3个核苷酸之间。In some embodiments, the sense strand of the siRNA modification comprises phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, between the second nucleotide and the third nucleotide starting from the 5' end, between the first nucleotide and the second nucleotide starting from the 3' end, and between the second and third nucleotides starting from the 3' end.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的正义链包括如下位置处的硫代磷酸二酯键:5’末端起始的第1个核苷酸与第2个核苷酸之间、5’末端起始的第2个核苷酸与第3个核苷酸之间。In some embodiments, the sense strand of the siRNA modification includes phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, and between the second nucleotide and the third nucleotide starting from the 5' end.
在一些具体的实施方案中,siRNA修饰物正义链具有如(a1)-(a3)任一项所示的结构:In some specific embodiments, the sense strand of the siRNA modification has a structure as shown in any one of (a 1 )-(a 3 ):
(a1)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-T-(s)-T-3’,(a 1 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(a2)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(a 2 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(a3)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’;(a 3 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3';
其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接。Wherein, N1 - N23 are independently selected from ribonucleotides whose base is A, U, C or G, the capital letter T represents a deoxyribonucleotide whose base is thymine, the lowercase letter m represents that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide, the lowercase letter f represents that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide, and -(s)- represents that two adjacent nucleotides are connected by a phosphorothioate diester bond.
在另外一些具体的实施方案中,siRNA修饰物正义链具有如(a4)-(a5)任一项所示的结构:In some other specific embodiments, the sense strand of the siRNA modification has a structure as shown in any one of ( a4 )-( a5 ):
(a4)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-3’,(a 4 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -3',
(a5)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-3’;(a 5 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -3';
其中,N1-N21彼此独立地选自碱基为A、U、C或G的核糖核苷酸,小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接。Wherein, N1 - N21 are independently selected from ribonucleotides whose base is A, U, C or G, the lowercase letter m indicates that the adjacent ribonucleotide to the right of the letter m is a 2'-O- CH3- modified ribonucleotide, the lowercase letter f indicates that the adjacent ribonucleotide to the left of the letter f is a 2'-F-modified ribonucleotide, and -(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的反义链包括如下修饰:所述反义链中任意奇数位置处的核糖核苷酸为2’-甲氧基修饰的核糖核苷酸,所述反义链中任意偶数位置处的核糖核苷酸为2’-氟代修饰的核糖核苷酸。In some embodiments, along the 5' end to the 3' end direction, the antisense strand of the siRNA modifier includes the following modifications: the ribonucleotide at any odd position in the antisense strand is a 2'-methoxy-modified ribonucleotide, and the ribonucleotide at any even position in the antisense strand is a 2'-fluoro-modified ribonucleotide.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的反义链包括如下修饰:所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。In some embodiments, along the 5' end to the 3' end direction, the antisense strand of the siRNA modification comprises the following modifications: the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的反义链包括如下修饰:所述反义链中第2位、第6位、第8位、第9位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。In some embodiments, along the 5' end to the 3' end direction, the antisense strand of the siRNA modification comprises the following modifications: the ribonucleotides at positions 2, 6, 8, 9, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides.
在一些实施方案中,沿5’末端向3’末端方向,所述反义链中第2位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第6位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。In some embodiments, along the direction from the 5' end to the 3' end, the ribonucleotides at positions 2, 14 and 16 in the antisense chain are 2'-F modified ribonucleotides, the ribonucleotide at position 6 in the antisense chain is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense chain are 2'-O- CH3 modified ribonucleotides.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的反义链包括如下修饰:所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第7位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。In some embodiments, along the direction from the 5' end to the 3' end, the antisense strand of the siRNA modifier includes the following modifications: the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, the ribonucleotide at position 7 in the antisense strand is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O- CH3 modified ribonucleotides.
在一些实施方案中,沿5’末端向3’末端方向,siRNA修饰物的反义链包括如下所示位置处的硫代磷酸二酯键:5’末端起始的第1个核苷酸与第2个核苷酸之间,5’末端起始的第2个核苷酸与第3个核苷酸之间,3’末端起始的第1个核苷酸与第2个核苷酸之间,
以及3’末端起始的第2个核苷酸与第3个核苷酸之间。In some embodiments, the antisense strand of the siRNA modification comprises phosphorothioate diester bonds at the following positions along the 5' end to the 3' end: between the first nucleotide and the second nucleotide starting from the 5' end, between the second nucleotide and the third nucleotide starting from the 5' end, between the first nucleotide and the second nucleotide starting from the 3' end, and between the second and third nucleotides starting from the 3' end.
在一些实施方案中,沿5’末端向3’末端方向,反义链的5’末端的核苷酸不连接5’磷酸基团或5’磷酸衍生基团,或连接5’磷酸基团或5’磷酸衍生基团。In some embodiments, along the 5' end to the 3' end direction, the nucleotide at the 5' end of the antisense strand is not linked to a 5' phosphate group or a 5' phosphate-derivative group, or is linked to a 5' phosphate group or a 5' phosphate-derivative group.
在本文中,反义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团时,该5’末端核苷酸的结构如式X所示:
Herein, when the 5' terminal nucleotide of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group, the structure of the 5' terminal nucleotide is as shown in Formula X:
Herein, when the 5' terminal nucleotide of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group, the structure of the 5' terminal nucleotide is as shown in Formula X:
其中,Base表示碱基,例如A、U、G、C或T;R为羟基或被本领域技术人员所知晓的各类基团所取代,例如,R可以为2’-氟代(2’-F)、2’-烷氧基、2’-取代的烷氧基、2’-烷基、2’-取代的烷基、2’-氨基、2’-取代的氨基、2’-脱氧核苷酸。Wherein, Base represents a base, such as A, U, G, C or T; R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
示例性的,5’磷酸基团的结构为:5’磷酸衍生基团的结构包括但不限于:等。Exemplarily, the structure of the 5' phosphate group is: The structures of the 5' phosphate derivative group include but are not limited to: wait.
在一些具体的实施方案中,siRNA修饰物反义链具有如下(b1)-(b27)任一项所示的结构:In some specific embodiments, the antisense strand of the siRNA modification has a structure as shown in any one of (b 1 ) to (b 27 ):
(b1)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-T-(s)-T-3’,(b 1 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-T-(s)-T-3',
(b2)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 2 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b3)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 3 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b4)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 4 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b5)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 5 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b6)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-N20f-(s)-mN21-3’,(b 6 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-N 20 f-(s)-mN 21 -3',
(b7)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 7 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b8)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 8 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b9)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 9 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b10)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 10 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b11)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-N20f-mN21-(s)-N22f-(s)-mN23-3’,(b 11 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -N 20 f-mN 21 -(s)-N 22 f-(s)- mN 23 -3',
(b12)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 12 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b13)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14
f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 13 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 - mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b14)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 14 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3' ,
(b15)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 15 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3 ',
(b16)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 16 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b17)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 17 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b18)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 18 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b19)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 19 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b20)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 20 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b21)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 21 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b22)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 22 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b23)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 23 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b24)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 24 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b25)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 25 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b26)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 26 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b27)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’;(b 27 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3';
其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,P1表示该字母右侧相邻的一个核苷酸为5’-磷酸核苷酸,EVP表示该字母组合右侧相邻的一个核苷酸为5’-反式乙烯基膦酸酯核苷酸,-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接,[GNA]表示其右侧相邻的一个核糖核苷酸为存在GNA修饰的核糖核苷酸。wherein N1 - N23 are independently selected from ribonucleotides whose base is A, U, C or G; the capital letter T represents a deoxyribonucleotide whose base is thymine; the lowercase letter m represents that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide; the lowercase letter f represents that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide; P1 represents that a nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide; EVP represents that a nucleotide adjacent to the right of the letter combination is a 5'-trans-vinylphosphonate nucleotide; -(s)- represents that two adjacent nucleotides are connected by a phosphorothioate diester bond; and [GNA] represents that a ribonucleotide adjacent to the right is a GNA-modified ribonucleotide.
在一些可选的实施方式中,所述正义链包含如SEQ ID NO:222~283和595~650任一项所示的核苷酸序列,并且所述反义链包含如SEQ ID NO:284~393、651~748、788~798、498和590任一项所示的核苷酸序列。In some optional embodiments, the sense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 222 to 283 and 595 to 650, and the antisense strand comprises a nucleotide sequence as shown in any one of SEQ ID NOs: 284 to 393, 651 to 748, 788 to 798, 498 and 590.
在一些实施方案中,双链核糖核酸修饰物包括但不限于如表2中所示的siRNA修饰物。In some embodiments, the double-stranded RNA modifications include, but are not limited to, the siRNA modifications shown in Table 2.
在一些具体的实施方案中,本公开的siRNA修饰物对MARC1基因的抑制率至少为约20%,可以至少为约25%、约30%、约35%、约40%、约45%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%、约94%、约95%、约96%、约97%、约98%、约99%,或这些数值任意二者之间的数值或范围。在一些实施方案中,本公开的siRNA修饰物对MARC1基因的IC50小于约0.4nM,可以小于
约0.3、约0.2、约0.1、约0.09、约0.08、约0.07、约0.06、约0.05、约0.04、约0.03、约0.02、约0.01nM。In some specific embodiments, the inhibition rate of the siRNA modification disclosed herein on the MARC1 gene is at least about 20%, and may be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values. In some embodiments, the IC 50 of the siRNA modification disclosed herein on the MARC1 gene is less than about 0.4 nM, and may be less than About 0.3, about 0.2, about 0.1, about 0.09, about 0.08, about 0.07, about 0.06, about 0.05, about 0.04, about 0.03, about 0.02, about 0.01 nM.
双链核糖核酸缀合物Double-stranded RNA conjugate
本公开的第三方面提供一种双链核糖核酸缀合物,是本公开第一方面提供的双链核糖核酸或第二方面提供的双链核糖核酸修饰物与缀合基团缀合连接得到。The third aspect of the present disclosure provides a double-stranded RNA conjugate, which is obtained by conjugating the double-stranded RNA provided by the first aspect of the present disclosure or the double-stranded RNA modification provided by the second aspect with a conjugation group.
在本公开中,双链核糖核酸缀合物的正义链与反义链形成双链核糖核酸缀合物的双链区,并且,在双链核糖核酸缀合物的正义链的3’末端形成平末端。在一些实施方案中,双链核糖核酸缀合物的正义链的3’末端形成平末端,双链核糖核酸缀合物的反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸。在另外一些实施方案中,双链核糖核酸缀合物的正义链的3’末端形成平末端,双链核糖核酸缀合物的反义链的3’末端形成平末端。In the present disclosure, the sense strand and the antisense strand of the double-stranded RNA conjugate form a double-stranded region of the double-stranded RNA conjugate, and a blunt end is formed at the 3' end of the sense strand of the double-stranded RNA conjugate. In some embodiments, the 3' end of the sense strand of the double-stranded RNA conjugate forms a blunt end, and the 3' end of the antisense strand of the double-stranded RNA conjugate has 1-2 protruding nucleotides extending out of the double-stranded region. In other embodiments, the 3' end of the sense strand of the double-stranded RNA conjugate forms a blunt end, and the 3' end of the antisense strand of the double-stranded RNA conjugate forms a blunt end.
在一些优选地实施方案中,双链核糖核酸缀合物由双链核糖核酸修饰物与缀合基团缀合连接得到。其中,双链核糖核酸修饰物的正义链与反义链互补形成双链核糖核酸修饰物的双链区,并且,双链核糖核酸修饰物的正义链的3’末端形成平末端,缀合基团与具有平末端的正义链的3’末端缀合连接,形成双链核糖核酸缀合物。In some preferred embodiments, the double-stranded RNA conjugate is obtained by conjugating a double-stranded RNA modification with a conjugation group, wherein the sense strand and the antisense strand of the double-stranded RNA modification are complementary to form a double-stranded region of the double-stranded RNA modification, and the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end, and the conjugation group is conjugated with the 3' end of the sense strand with the blunt end to form a double-stranded RNA conjugate.
示例性地,双链核糖核酸修饰物的正义链为序列A所示的序列,反义链为序列B连接序列E所示的序列。并且,双链核糖核酸修饰物的正义链的3’末端形成平末端,双链核糖核酸修饰物的正义链的3’末端连接缀合基团,形成双链核糖核酸缀合物。Exemplarily, the sense strand of the double-stranded RNA modification is the sequence shown in sequence A, and the antisense strand is the sequence shown in sequence B connected to sequence E. In addition, the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end, and the 3' end of the sense strand of the double-stranded RNA modification is connected to a conjugated group to form a double-stranded RNA conjugate.
示例性地,双链核糖核酸修饰物的正义链为序列A所示的序列,反义链为序列B所示的序列。并且,双链核糖核酸修饰物的正义链的3’末端形成平末端,双链核糖核酸修饰物的正义链3’末端连接缀合基团,形成双链核糖核酸缀合物。Exemplarily, the sense strand of the double-stranded RNA modification is the sequence shown in sequence A, and the antisense strand is the sequence shown in sequence B. In addition, the 3' end of the sense strand of the double-stranded RNA modification forms a blunt end, and the 3' end of the sense strand of the double-stranded RNA modification is connected to a conjugated group to form a double-stranded RNA conjugate.
示例性地,双链核糖核酸修饰物的正义链为序列A连接序列D所示的序列,反义链为序列B连接序列E所示的序列。并且,双链核糖核酸修饰物的正义链的3’末端具有突出的1-2个核苷酸组成的序列D,将双链核糖核酸修饰物中正义链的3’末端的序列D排除后,在序列A的3’末端连接缀合基团,形成双链核糖核酸缀合物。Exemplarily, the sense strand of the double-stranded RNA modification is a sequence A connected to a sequence D, and the antisense strand is a sequence B connected to a sequence E. In addition, the 3' end of the sense strand of the double-stranded RNA modification has a sequence D consisting of 1-2 nucleotides protruding, and after excluding the sequence D at the 3' end of the sense strand in the double-stranded RNA modification, a conjugation group is connected to the 3' end of sequence A to form a double-stranded RNA conjugate.
示例性地,双链核糖核酸修饰物的正义链为序列A连接序列D所示的序列,反义链为序列B所示的序列。并且,双链核糖核酸修饰物的正义链的3’末端具有突出的1-2个核苷酸组成的序列D,将双链核糖核酸修饰物中正义链的3’末端的序列D排除后,在序列A的3’末端连接缀合基团,形成双链核糖核酸缀合物。Exemplarily, the sense strand of the double-stranded RNA modification is the sequence shown by sequence A connected to sequence D, and the antisense strand is the sequence shown by sequence B. In addition, the 3' end of the sense strand of the double-stranded RNA modification has a sequence D consisting of protruding 1-2 nucleotides, and after excluding the sequence D at the 3' end of the sense strand in the double-stranded RNA modification, a conjugation group is connected to the 3' end of sequence A to form a double-stranded RNA conjugate.
示例性地,双链核糖核酸修饰物的正义链为序列A所示的序列,反义链为序列B连接序列E所示的序列。其中,序列A的3’末端具有延伸出双链区的突出的核苷酸,将位于序列A中3’末端的突出的核苷酸排除后的序列(又称,序列A’)作为用于连接缀合基团的核苷酸序列。因此,双链核糖核酸缀合物的正义链的核苷酸序列为序列A’所示的序列,反义链的核苷酸序列为序列B连接序列E所示的序列。Exemplarily, the sense strand of the double-stranded RNA modification is the sequence shown in sequence A, and the antisense strand is the sequence shown in sequence B connected to sequence E. Wherein, the 3' end of sequence A has a protruding nucleotide extending out of the double-stranded region, and the sequence after excluding the protruding nucleotide at the 3' end of sequence A (also known as sequence A') is used as the nucleotide sequence for connecting the conjugated group. Therefore, the nucleotide sequence of the sense strand of the double-stranded RNA conjugate is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
示例性地,双链核糖核酸修饰物的正义链为序列A所示的序列,反义链为序列B所示的序列。其中,序列A的3’末端具有延伸出双链区的突出的核苷酸,将位于序列A中3’末端的突出的核苷酸排除后的序列(又称,序列A’)作为用于连接缀合基团的核苷酸序列。因此,双链核糖核酸缀合物的正义链的核苷酸序列为序列A’所示的序列,反义链的核苷酸序列为序列B所示的序列。Exemplarily, the sense strand of the double-stranded RNA modification is the sequence shown in sequence A, and the antisense strand is the sequence shown in sequence B. Wherein, the 3' end of sequence A has a protruding nucleotide extending out of the double-stranded region, and the sequence after excluding the protruding nucleotide at the 3' end of sequence A (also known as sequence A') is used as the nucleotide sequence for connecting the conjugated group. Therefore, the nucleotide sequence of the sense strand of the double-stranded RNA conjugate is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand is the sequence shown in sequence B.
示例性地,如N-ER-FY025102M8L96所示的siRNA缀合物,其正义链的3’末端原本具有延伸出双链区的突出的核苷酸-smUsmA,将位于正义链中3’末端的突出的-smUsmA核苷酸排除后形成的mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmA平末端序列作为用于连接L96缀合基团的核苷酸序列(即在序列合成到平末端后通过磷酸二酯键连接L96),因此,形成siRNA缀合物的序列为:正义链为
mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmAL96(SEQ ID NO:756),反义链为EVPmUsCfsmUmGmAAfmAmUmCmAmCmUmGAfmAUfmCmAmCsmUsmU(SEQ ID NO:671)。For example, in the siRNA conjugate shown as N-ER-FY025102M8L96, the 3' end of the sense strand originally has a protruding nucleotide -smUsmA extending out of the double-stranded region. The mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmA blunt-end sequence formed after the protruding -smUsmA nucleotide at the 3' end of the sense strand is excluded is used as the nucleotide sequence for connecting the L96 conjugation group (i.e., L96 is connected through a phosphodiester bond after the sequence is synthesized to the blunt end). Therefore, the sequence of the siRNA conjugate is: the sense strand is mGsmUsmGmAmUmUCfmAGfUfGfmAmUmUmUmCmAmGmAL96 (SEQ ID NO: 756), and the antisense strand is EVPmUsCfsmUmGmAAfmAmUmCmAmCmUmGAfmAUfmCmAmCsmUsmU (SEQ ID NO: 671).
在一些可选地实施方案中,双链核糖核酸缀合物的正义链具有如(d1)-(d2)任一项所示的结构:In some alternative embodiments, the sense strand of the double-stranded RNA conjugate has a structure as shown in any one of (d 1 )-(d 2 ):
(d1)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-L96-3’,(d 1 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -L96-3',
(d2)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-L96-3’;(d 2 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -L96-3';
其中,N1-N21彼此独立地选自碱基为A、U、C或G的核糖核苷酸,小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接。L96也即式I所示的缀合物基团GalNAc。Wherein, N1 - N21 are independently selected from ribonucleotides whose bases are A, U, C or G, the lowercase letter m indicates that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3 modified ribonucleotide, the lowercase letter f indicates that a ribonucleotide adjacent to the left of the letter f is a 2'-F modified ribonucleotide, and -(s)- indicates that two adjacent nucleotides are connected by a phosphorothioate diester bond. L96 is the conjugate group GalNAc shown in formula I.
在一些可选地实施方案中,双链核糖核酸缀合物的反义链具有如(b1)-(b27)任一项所示的结构:In some alternative embodiments, the antisense strand of the double-stranded RNA conjugate has a structure as shown in any one of (b 1 )-(b 27 ):
(b1)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-T-(s)-T-3’,(b 1 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-T-(s)-T-3',
(b2)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 2 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b3)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 3 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b4)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 4 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b5)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 5 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b6)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-N20f-(s)-mN21-3’,(b 6 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-N 20 f-(s)-mN 21 -3',
(b7)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1
4f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 7 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b8)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 8 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b9)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 9 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b10)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 10 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b11)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-N20f-mN21-(s)-N22f-(s)-mN23-3’,(b 11 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -N 20 f-mN 21 -(s)-N 22 f-(s)- mN 23 -3',
(b12)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 12 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b13)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 13 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b14)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’(b 14 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3'
(b15)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,
(b 15 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3 ',
(b16)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 16 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b17)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 17 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b18)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 18 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b19)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 19 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',
(b20)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 20 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b21)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 21 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b22)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 22 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b23)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 23 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',
(b24)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 24 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b25)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 25 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b26)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 26 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',
(b27)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’;(b 27 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3';
其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,P1表示该字母右侧相邻的一个核苷酸为5’-磷酸核苷酸,EVP表示该字母组合右侧相邻的一个核苷酸为5’-反式乙烯基膦酸酯核苷酸,-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接,[GNA]表示其右侧相邻的一个核糖核苷酸为存在GNA修饰的核糖核苷酸。wherein N1 - N23 are independently selected from ribonucleotides whose bases are A, U, C or G; capital letter T indicates a deoxyribonucleotide whose base is thymine; lowercase letter m indicates that a ribonucleotide adjacent to the right of the letter m is a 2'-O- CH3- modified ribonucleotide; lowercase letter f indicates that a ribonucleotide adjacent to the left of the letter f is a 2'-F-modified ribonucleotide; P1 indicates that a nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide; EVP indicates that a nucleotide adjacent to the right of the letter combination is a 5'-trans-vinylphosphonate nucleotide; -(s)- indicates that two adjacent nucleotides are connected by a phosphorothioate diester bond; and [GNA] indicates that a ribonucleotide adjacent to the right of the letter is a GNA-modified ribonucleotide.
进一步地,双链核糖核酸缀合物为siRNA缀合物,其中siRNA缀合物中与缀合基团连接的siRNA分子可以是未修饰的siRNA,或siRNA修饰物。缀合基团修饰的siRNA分子在保持了较高的抑制活性和稳定性的同时,还具有较好的组织、器官靶向性和促进细胞内吞的能力,可降低对其他组织或器官的影响以及减少siRNA分子使用量,可达到减轻毒性和降低成本的目的。可选地,选择表1或表1-1或表2示出的任意一种siRNA分子与缀合基团连接,得到双链核糖核酸缀合物。Further, the double-stranded RNA conjugate is a siRNA conjugate, wherein the siRNA molecule connected to the conjugation group in the siRNA conjugate can be an unmodified siRNA, or a siRNA modification. The siRNA molecule modified with the conjugation group has good tissue and organ targeting and the ability to promote cell endocytosis while maintaining high inhibitory activity and stability, which can reduce the impact on other tissues or organs and reduce the amount of siRNA molecules used, thereby achieving the purpose of reducing toxicity and reducing costs. Optionally, any one of the siRNA molecules shown in Table 1 or Table 1-1 or Table 2 is selected to be connected to the conjugation group to obtain a double-stranded RNA conjugate.
siRNA与缀合基团的缀合位点可以在siRNA正义链的3’末端或5’末端,也可在反义链的5’端,还可以在siRNA的内部序列中。在一些实施方案中,所述siRNA与缀合基团的缀合位点在siRNA正义链的3’末端。The conjugation site of siRNA and conjugated group can be at the 3' end or 5' end of the siRNA sense strand, or at the 5' end of the antisense strand, or in the internal sequence of siRNA. In some embodiments, the conjugation site of siRNA and conjugated group is at the 3' end of the siRNA sense strand.
在一些实施方式中,所述缀合基团可以连接在核苷酸的磷酸基团、2’-位羟基或者碱基上。在一些实施方式中,所述缀合基团还可以连接在3’-位羟基上,此时核苷酸之间采用2’,5’-磷酸二酯键连接。当缀合基团连接在siRNA链的末端时,所述缀合基团通常连接在核苷酸的磷酸基团上;当缀合基团连接在siRNA的内部序列时,所述缀合基团通常连接在核糖糖环或者碱基上。各种连接方式可以参考文献:Muthiah Manoharan et.al.
siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes.ACS Chemical biology,2015,10(5):1181-7。In some embodiments, the conjugate group can be connected to the phosphate group, 2'-hydroxyl group or base of the nucleotide. In some embodiments, the conjugate group can also be connected to the 3'-hydroxyl group, in which case the nucleotides are connected by a 2',5'-phosphodiester bond. When the conjugate group is connected to the end of the siRNA chain, the conjugate group is usually connected to the phosphate group of the nucleotide; when the conjugate group is connected to the internal sequence of the siRNA, the conjugate group is usually connected to the ribose sugar ring or the base. Various connection methods can be referred to in the literature: Muthiah Manoharan et.al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5):1181-7.
在本公开中,缀合基团可以是siRNA给药领域常规使用的配体。在一些实施方式中,所述缀合基团可以选自以下靶向分子或其衍生物形成的配体中的一种或多种:亲脂分子,例如胆固醇、胆汁酸、维生素(例如维生素E)、不同链长的脂质分子;聚合物,例如聚乙二醇;多肽,例如透膜肽;适配体;抗体;量子点;糖类,例如乳糖、聚乳糖、甘露糖、半乳糖、N-乙酰半乳糖胺(GalNAc);叶酸(folate);肝实质细胞表达的受体配体,例如去唾液酸糖蛋白、去唾液酸糖残基、脂蛋白(如高密度脂蛋白、低密度脂蛋白等)、胰高血糖素、神经递质(如肾上腺素)、生长因子、转铁蛋白等。In the present disclosure, the conjugated group can be a ligand conventionally used in the field of siRNA administration. In some embodiments, the conjugated group can be selected from one or more of the ligands formed by the following targeting molecules or their derivatives: lipophilic molecules, such as cholesterol, bile acid, vitamins (such as vitamin E), lipid molecules of different chain lengths; polymers, such as polyethylene glycol; polypeptides, such as membrane-permeable peptides; aptamers; antibodies; quantum dots; carbohydrates, such as lactose, polylactose, mannose, galactose, N-acetylgalactosamine (GalNAc); folic acid (folate); receptor ligands expressed by hepatocytes, such as asialoglycoproteins, asialosugar residues, lipoproteins (such as high-density lipoproteins, low-density lipoproteins, etc.), glucagon, neurotransmitters (such as adrenaline), growth factors, transferrin, etc.
在一些具体的实施方案中,所述缀合基团具有如下任一所示结构:
In some specific embodiments, the conjugated group has any of the following structures:
In some specific embodiments, the conjugated group has any of the following structures:
式I所示的缀合基团为GalNAc,GalNAc具有肝脏靶向性,可以将siRNA分子高特异性地递送于肝脏组织中,特异性抑制肝脏内MARC1基因的高表达。The conjugated group shown in Formula I is GalNAc. GalNAc has liver targeting property and can deliver siRNA molecules to liver tissue with high specificity, thereby specifically inhibiting the high expression of MARC1 gene in the liver.
在一些具体的实施方案中,GalNAc通过磷酸二酯键与正义链的3’末端缀合连接,得到如下所示结构的siRNA缀合物:
In some specific embodiments, GalNAc is conjugated to the 3' end of the sense strand via a phosphodiester bond to obtain a siRNA conjugate with the following structure:
In some specific embodiments, GalNAc is conjugated to the 3' end of the sense strand via a phosphodiester bond to obtain a siRNA conjugate with the following structure:
其中,双螺旋结构为未修饰的siRNA或siRNA修饰物。
The double helix structure is unmodified siRNA or siRNA modification.
在一些实施方案中,双链核糖核酸缀合物包括但不限于如表3中所示的siRNA缀合物。In some embodiments, the double-stranded ribonucleic acid conjugates include, but are not limited to, siRNA conjugates as shown in Table 3.
在一些具体的实施方案中,本公开的siRNA缀合物对MARC1基因的抑制率至少为约20%,可以至少为约25%、约30%、约35%、约40%、约45%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%、约94%、约95%、约96%、约97%、约98%、约99%,或这些数值任意二者之间的数值或范围。In some specific embodiments, the inhibition rate of the siRNA conjugates disclosed herein on the MARC1 gene is at least about 20%, and may be at least about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or a value or range between any two of these values.
前药Prodrug
本公开的第四方面提供一种前药。本公开的第一方面所述的双链核糖核酸、第二方面所述的双链核糖核酸修饰物,以及第三方面所述的双链核糖核酸缀合物还可以以前药的形式存在,前药可在体内或体外转化为本公开的双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物。The fourth aspect of the present disclosure provides a prodrug. The double-stranded RNA described in the first aspect of the present disclosure, the double-stranded RNA modified product described in the second aspect, and the double-stranded RNA conjugate described in the third aspect can also exist in the form of a prodrug, and the prodrug can be converted into the double-stranded RNA, double-stranded RNA modified product, and double-stranded RNA conjugate of the present disclosure in vivo or in vitro.
如本说明书所使用的,“前药”是指经过生物体内转化后才发挥药理作用的化合物。例如,本申请中M6是M2的前药,M2与M6的修饰区别就是反义链的5’末端是否有P1,无P1的M6在体内会磷酸化变为带P1的M2序列,从而发挥作用,同理,M7和M3的关系也是如此,因此,本文中siRNA包括其对应的前药。As used in this specification, "prodrug" refers to a compound that exerts its pharmacological effect after transformation in the organism. For example, in this application, M6 is a prodrug of M2. The difference between the modification of M2 and M6 is whether there is P1 at the 5' end of the antisense strand. M6 without P1 will be phosphorylated in the body to become the M2 sequence with P1, thereby exerting its effect. Similarly, the relationship between M7 and M3 is the same. Therefore, siRNA in this article includes its corresponding prodrug.
药物组合物Pharmaceutical composition
本公开的第五方面提供一种药物组合物,包括第一方面所述的双链核糖核酸、第二方面所述的双链核糖核酸修饰物、第三方面所述的双链核糖核酸缀合物以及第四方面所述的前药中的一种或多种。The fifth aspect of the present disclosure provides a pharmaceutical composition, comprising one or more of the double-stranded RNA described in the first aspect, the double-stranded RNA modification described in the second aspect, the double-stranded RNA conjugate described in the third aspect, and the prodrug described in the fourth aspect.
在一些实施方案中,所述药物组合物含有如上所述的siRNA或前药作为活性成分和药学上可接受的载体。在一些实施方案中,所述药物组合物还含有一种或多种另外的治疗剂,例如对预防或治疗至少部分由MARC1基因表达介导的疾病、病症或症状有益的治疗剂。在本公开中,使用药物组合物的目的在于促进针对生物体的给药,有利于活性成分的吸收,进而发挥生物活性。本公开的药物组合物可以通过任何形式给药,包括注射(动脉内、静脉内、肌肉内、腹膜内、皮下)、粘膜、口服(口服固体制剂、口服液体制剂)、直肠、吸入、植入、局部(例如眼部)给药等。口服固体制剂的非限制性实例包括但不限于散剂、胶囊剂、锭剂、颗粒剂、片剂等。口服或粘膜给药的液体制剂的非限制性实例包括但不限于混悬剂、酊剂、酏剂、溶液剂等。局部给药制剂的非限制性实例包括但不限于乳剂、凝胶剂、软膏剂、乳膏剂、贴剂、糊剂、泡沫剂、洗剂、滴剂或血清制剂。胃肠外给药制剂的非限制性实例包括但不限于注射用溶液剂、注射用干粉剂、注射用悬浮液、注射用乳剂等。本公开的药物组合物还可以制成控制释放或延迟释放剂型(例如脂质体或微球)。In some embodiments, the pharmaceutical composition contains siRNA or prodrug as described above as an active ingredient and a pharmaceutically acceptable carrier. In some embodiments, the pharmaceutical composition also contains one or more additional therapeutic agents, such as therapeutic agents that are beneficial to the prevention or treatment of diseases, disorders or symptoms mediated at least in part by MARC1 gene expression. In the present disclosure, the purpose of using the pharmaceutical composition is to promote administration to an organism, which is conducive to the absorption of the active ingredient and thus exerts biological activity. The pharmaceutical composition of the present disclosure can be administered in any form, including injection (intra-arterial, intravenous, intramuscular, intraperitoneal, subcutaneous), mucosal, oral (oral solid preparations, oral liquid preparations), rectal, inhalation, implantation, topical (e.g., ophthalmic) administration, etc. Non-limiting examples of oral solid preparations include, but are not limited to, powders, capsules, lozenges, granules, tablets, etc. Non-limiting examples of liquid preparations for oral or mucosal administration include, but are not limited to, suspensions, tinctures, elixirs, solutions, etc. Non-limiting examples of topical preparations include, but are not limited to, emulsions, gels, ointments, creams, patches, pastes, foams, lotions, drops or serum preparations. Non-limiting examples of parenteral preparations include, but are not limited to, solutions for injection, dry powders for injection, suspensions for injection, emulsions for injection, etc. The pharmaceutical compositions of the present disclosure can also be prepared into controlled-release or delayed-release dosage forms (eg, liposomes or microspheres).
在本公开中,施用途经能够以任何适用的方式进行变化或调整,以满足药物的性质、患者和医务人员的便利以及其它相关因素的需求。In the present disclosure, the route of administration can be varied or adjusted in any applicable manner to meet the requirements of the properties of the drug, the convenience of the patient and the medical staff, and other relevant factors.
医药用途Medical Uses
本公开的第六方面提供双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药和药物组合物的如下至少一种用途:The sixth aspect of the present disclosure provides at least one of the following uses of double-stranded RNA, double-stranded RNA modifications, double-stranded RNA conjugates, prodrugs, and pharmaceutical compositions:
(1)抑制MARC1基因表达,或制备用于抑制MARC1基因表达的药物;(1) Inhibiting the expression of MARC1 gene, or preparing a drug for inhibiting the expression of MARC1 gene;
(2)用于预防或治疗与MARC1基因异常表达相关的疾病,或制备用于预防或治疗与MARC1基因异常表达相关的疾病的药物;(2) for preventing or treating diseases associated with abnormal expression of the MARC1 gene, or for preparing drugs for preventing or treating diseases associated with abnormal expression of the MARC1 gene;
(3)用于治疗患有将受益于MARC1基因表达降低的疾病的受试者,或制备用于治疗患有将受益于MARC1基因表达降低的疾病的受试者的药物。(3) Use for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene, or for preparing a medicament for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene.
本公开进一步提供了siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)或其前药或药物组合物在上述(1)-(3)至少一种中的用途。
The present disclosure further provides the use of siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates) or prodrugs or pharmaceutical compositions thereof in at least one of the above (1)-(3).
在本公开中,MARC1基因异常表达,引发如下一种或多种MARC1基因异常表达相关疾病:肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征等。In the present disclosure, abnormal expression of MARC1 gene causes one or more of the following diseases related to abnormal expression of MARC1 gene: obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic fatty hepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular diseases, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes and metabolic syndrome, etc.
siRNA分子致使MARC1基因的表达被抑制至少约5%、至少约10%、至少约15%、至少约20%、至少约25%、至少约30%、至少约35%、至少约40%、至少约45%、至少约50%、至少约55%、至少约60%、至少约65%、至少约70%、至少约75%、至少约80%、至少约85%、至少约90%、至少约91%、至少约92%、至少约93%、至少约94%、至少约95%、至少约96%、至少约97%、至少约98%或至少约99%,实现对MARC1基因异常表达相关疾病的治疗。The siRNA molecule causes the expression of the MARC1 gene to be inhibited by at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98% or at least about 99%, thereby achieving the treatment of diseases related to abnormal expression of the MARC1 gene.
在一些实施方案中,本公开提供一种抑制细胞内MARC1基因表达的方法,包括将双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药或药物组合物与细胞接触。In some embodiments, the present disclosure provides a method for inhibiting MARC1 gene expression in a cell, comprising contacting a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug or a pharmaceutical composition with the cell.
进一步地,抑制细胞内MARC1基因表达的方法,是将siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物引入细胞内。Furthermore, the method for inhibiting the expression of MARC1 gene in cells is to introduce siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions into cells.
在一些实施方案中,所述细胞为体内细胞或体外细胞。在一些具体的实施方案中,所述细胞在受试者体内。In some embodiments, the cell is an in vivo cell or an in vitro cell. In some specific embodiments, the cell is in a subject.
在一些实施方案中,本公开提供预防或治疗疾病的方法,包括向受试者或患者施用双链核糖核酸、双链核糖核酸修饰物、双链核糖核酸缀合物、前药或药物组合物。In some embodiments, the present disclosure provides a method for preventing or treating a disease, comprising administering a double-stranded RNA, a double-stranded RNA modification, a double-stranded RNA conjugate, a prodrug, or a pharmaceutical composition to a subject or patient.
进一步地,预防或治疗疾病的方法是向受试者或患者施用siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物。Furthermore, the method for preventing or treating a disease is to administer siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions to a subject or patient.
在本公开中,“受试者”包括或者人或者非人类动物,优选脊椎动物,并且更优选哺乳动物。受试者可以包括转基因生物体。最优选地,受试者是人。进一步地,受试者具有如下至少一种特性:In the present disclosure, "subject" includes either a human or a non-human animal, preferably a vertebrate, and more preferably a mammal. The subject may include a transgenic organism. Most preferably, the subject is a human. Further, the subject has at least one of the following characteristics:
(1)体内MARC1基因异常表达,更具体地为MARC1基因异常高表达;(1) Abnormal expression of the MARC1 gene in vivo, more specifically, abnormally high expression of the MARC1 gene;
(2)患有与MARC1基因异常表达相关的疾病;(2) suffering from diseases related to abnormal expression of MARC1 gene;
(3)患有将受益于MARC1基因表达降低的疾病。如罹患或倾向于患上与MARC1基因异常表达相关的疾病的人。(3) People who suffer from diseases that would benefit from reduced MARC1 gene expression, such as people who suffer from or are prone to diseases associated with abnormal MARC1 gene expression.
本公开的siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物的用量可以根据患者的体重、年龄、性别、疾病的严重程度等来确定。以其中所含的双链核糖核酸的量计,本公开的siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物的施用剂量为约1-300mg/kg体重。The dosage of the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions disclosed herein can be determined according to the patient's weight, age, gender, severity of the disease, etc. Based on the amount of double-stranded ribonucleic acid contained therein, the dosage of the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions disclosed herein is about 1-300 mg/kg body weight.
给药频率可以是每天、每周、每两周、每三周、每1个月、每2个月、每3个月、每4个月、每5个月、每6个月、每7个月、每8个月、每9个月、每10个月、每11个月或每年,1次或多次。The frequency of administration can be daily, weekly, every two weeks, every three weeks, every 1 month, every 2 months, every 3 months, every 4 months, every 5 months, every 6 months, every 7 months, every 8 months, every 9 months, every 10 months, every 11 months or yearly, once or more.
施用本公开的siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物的总次数可为1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34、35、36、37、38、39、40、41、42、43、44、45、46、47、48、49或50次。例如,本公开的siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药或药物组合物可施用约1、2、3、4次。The total number of times the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions of the present disclosure are administered can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 or 50. For example, the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs or pharmaceutical compositions of the present disclosure can be administered about 1, 2, 3, 4 times.
在一些实施方案中,本公开的siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药、药物组合物和任选地其他治疗剂可被包装在试剂盒中,试剂盒中siRNA分子(包括未修饰的siRNA、siRNA修饰物、siRNA缀合物)、前药、药学上可接受的载体和任选地其他治疗剂可以以液体形式或干燥形式提供。在一些实施方案中,所述试剂盒
包含说明书,以说明如何将siRNA分子或前药与药学上可接受的载体或其他成分进行混合。In some embodiments, the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs, pharmaceutical compositions, and optionally other therapeutic agents disclosed herein may be packaged in a kit, wherein the siRNA molecules (including unmodified siRNA, siRNA modifications, siRNA conjugates), prodrugs, pharmaceutically acceptable carriers, and optionally other therapeutic agents may be provided in liquid form or dry form. In some embodiments, the kit Instructions are included to describe how to mix the siRNA molecule or prodrug with a pharmaceutically acceptable carrier or other ingredients.
表1 siRNA序列信息
Table 1 siRNA sequence information
Table 1 siRNA sequence information
表1-1 siRNA序列信息
Table 1-1 siRNA sequence information
Table 1-1 siRNA sequence information
表2 siRNA修饰物
Table 2 siRNA modifications
Table 2 siRNA modifications
上述表格中大写字母“G”、“C”、“A”、“T”和“U”每个通常代表分别含有鸟嘌呤、胞嘧啶、腺嘌呤、胸腺嘧啶和尿嘧啶作为碱基的核苷酸;mA、mU、mC、mG:表示2-甲氧基修饰的核苷酸;Af、Gf、Cf、Uf:表示2-氟代修饰的核苷酸;小写字母s表示与该字母s左右相邻的两个核苷酸之间为硫代磷酸二酯键连接;P1:表示该P1右侧相邻的一个核苷酸为5’-磷酸核苷酸;EVP表示其右侧相邻的一个核苷酸为5’-反式乙烯基膦酸酯核苷酸;[GNA]表示其右侧相邻的一个核糖核苷酸为存在GNA修饰的核糖核苷酸。In the above table, each of the capital letters "G", "C", "A", "T" and "U" generally represents a nucleotide containing guanine, cytosine, adenine, thymine and uracil as a base, respectively; mA, mU, mC, mG: represent 2-methoxy modified nucleotides; Af, Gf, Cf, Uf: represent 2-fluoro modified nucleotides; the lowercase letter s indicates that the two nucleotides adjacent to the letter s are connected by a thiophosphate diester bond; P1: indicates that the nucleotide adjacent to the right of P1 is a 5'-phosphate nucleotide; EVP indicates that the nucleotide adjacent to the right is a 5'-trans vinylphosphonate nucleotide; [GNA] indicates that the ribonucleotide adjacent to the right is a ribonucleotide modified with GNA.
表3 siRNA缀合物
Table 3 siRNA conjugates
Table 3 siRNA conjugates
上述表格中L96也即式I所示的缀合物基团GalNAc。In the above table, L96 is the conjugate group GalNAc shown in Formula I.
表1、表1-1、表2和表3中,正义链、修饰的正义链和连接缀合基团的修饰的正义链的5’末端核苷酸左侧如果没有标有P1或EVP,则代表该5’末端核苷酸没有连接5’磷酸基团或5’磷酸衍生基团,其结构如式X所示:
In Table 1, Table 1-1, Table 2 and Table 3, if the left side of the 5' terminal nucleotide of the sense strand, the modified sense strand and the modified sense strand connected to the conjugated group is not marked with P1 or EVP, it means that the 5' terminal nucleotide is not connected to a 5' phosphate group or a 5' phosphate derivative group, and its structure is shown in Formula X:
In Table 1, Table 1-1, Table 2 and Table 3, if the left side of the 5' terminal nucleotide of the sense strand, the modified sense strand and the modified sense strand connected to the conjugated group is not marked with P1 or EVP, it means that the 5' terminal nucleotide is not connected to a 5' phosphate group or a 5' phosphate derivative group, and its structure is shown in Formula X:
其中,Base表示碱基,例如A、U、G、C或T;R为羟基或被本领域技术人员所知晓的各类基团所取代,例如,R可以为2’-氟代(2’-F)、2’-烷氧基、2’-取代的烷氧基、2’-烷基、2’-取代的烷基、2’-氨基、2’-取代的氨基、2’-脱氧核苷酸。Wherein, Base represents a base, such as A, U, G, C or T; R is a hydroxyl group or is substituted by various groups known to those skilled in the art, for example, R can be 2'-fluoro (2'-F), 2'-alkoxy, 2'-substituted alkoxy, 2'-alkyl, 2'-substituted alkyl, 2'-amino, 2'-substituted amino, or 2'-deoxynucleotide.
表1、表1-1、表2和表3中,反义链和修饰的反义链的5’末端核苷酸左侧如果没有标有P1或EVP,则代表该5’末端核苷酸没有连接5’磷酸基团或5’磷酸衍生基团,其结构也如式X所示。In Table 1, Table 1-1, Table 2 and Table 3, if the left side of the 5' terminal nucleotide of the antisense strand and the modified antisense strand is not marked with P1 or EVP, it means that the 5' terminal nucleotide is not connected to a 5' phosphate group or a 5' phosphate derivative group, and its structure is also shown in Formula X.
表1、表1-1、表2和表3中,正义链和修饰的正义链的3’末端核苷酸、反义链和修饰的反义链的3’末端核苷酸的3’位置为羟基。In Table 1, Table 1-1, Table 2 and Table 3, the 3' position of the 3' terminal nucleotide of the sense strand and the modified sense strand, and the 3' terminal nucleotide of the antisense strand and the modified antisense strand is a hydroxyl group.
实施例Example
本公开的其他目的、特征和优点将从以下详细描述中变得明显。但是,应当理解的是,详细描述和具体实施例(虽然表示本公开的具体实施方式)仅为解释性目的而给出,因为在阅读该详细说明后,在本公开的精神和范围内所作出的各种改变和修饰,对于本领域技术人员来说将变得显而易见。Other objects, features and advantages of the present disclosure will become apparent from the following detailed description. However, it should be understood that the detailed description and specific examples (although representing specific embodiments of the present disclosure) are given for illustrative purposes only, because after reading the detailed description, various changes and modifications made within the spirit and scope of the present disclosure will become apparent to those skilled in the art.
本实施例中所用到的实验技术与实验方法,如无特殊说明均为常规技术方法,例如下列实施例中未注明具体条件的实验方法,通常按照常规条件如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。实施例中所使用的材料、试剂等,如无特殊说明,均可通过正规商业渠道获得。The experimental techniques and experimental methods used in this example are all conventional technical methods unless otherwise specified. For example, the experimental methods in the following examples that do not specify specific conditions are usually carried out according to conventional conditions such as those described in Sambrook et al., Molecular Cloning: A Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the conditions recommended by the manufacturer. The materials, reagents, etc. used in the examples can be obtained through regular commercial channels unless otherwise specified.
下述实施例涉及的siRNA、siRNA修饰物、siRNA缀合物由天霖生物科技(上海)有限公司合成,实施例中使用的细胞、试剂如表4所示:The siRNA, siRNA modifications, and siRNA conjugates involved in the following examples were synthesized by Tianlin Biotechnology (Shanghai) Co., Ltd. The cells and reagents used in the examples are shown in Table 4:
表4
Table 4
Table 4
实施例1:siRNA的合成Example 1: Synthesis of siRNA
1.1 siRNA序列设计1.1 siRNA sequence design
根据人MARC1基因mRNA序列,选择不同位点设计多对MARC1 siRNAs,设计的所有单个siRNA均能靶向靶基因的所有转录本(如表5),这些多对siRNA经序列相似性软件比对与其他所有非靶标基因序列有最低同源性。Based on the human MARC1 gene mRNA sequence, multiple pairs of MARC1 siRNAs were designed at different sites. All the designed single siRNAs can target all transcripts of the target gene (as shown in Table 5). These multiple pairs of siRNAs have the lowest homology with all other non-target gene sequences after sequence similarity software alignment.
表5
Table 5
Table 5
用于设计siRNA的靶标序列如下所示,靶标序列来源于MARC1的基因mRNA序列(参见NM_022746.4)。The target sequence used to design siRNA is shown below. The target sequence is derived from the mRNA sequence of the MARC1 gene (see NM_022746.4).
靶标序列I:
Target sequence I:
Target sequence I:
靶标序列I-1:
Target sequence I-1:
Target sequence I-1:
靶标序列I-2:
Target sequence I-2:
Target sequence I-2:
靶标序列I-3:
Target sequence I-3:
Target sequence I-3:
靶标序列I-4:
Target sequence I-4:
Target sequence I-4:
靶标序列I-5:
Target sequence I-5:
Target sequence I-5:
靶标序列I-6:
Target sequence I-6:
Target sequence I-6:
靶标序列II:
Target sequence II:
Target sequence II:
靶标序列II-1:
Target sequence II-1:
Target sequence II-1:
靶标序列II-2:
Target sequence II-2:
Target sequence II-2:
靶标序列II-3:
Target sequence II-3:
Target sequence II-3:
靶标序列II-4:
Target sequence II-4:
Target sequence II-4:
靶标序列II-5:
Target sequence II-5:
Target sequence II-5:
靶标序列II-6:
Target sequence II-6:
Target sequence II-6:
靶标序列III:
Target sequence III:
Target sequence III:
靶标序列III-1:
Target sequence III-1:
Target sequence III-1:
靶标序列III-2:
Target sequence III-2:
Target sequence III-2:
靶标序列III-3:
Target sequence III-3:
Target sequence III-3:
靶标序列III-4:
Target sequence III-4:
Target sequence III-4:
靶标序列III-5:
Target sequence III-5:
Target sequence III-5:
靶标序列IV:
Target sequence IV:
Target sequence IV:
靶标序列IV-1:
Target sequence IV-1:
Target sequence IV-1:
靶标序列IV-2:
Target sequence IV-2:
Target sequence IV-2:
靶标序列IV-3:
Target sequence IV-3:
Target sequence IV-3:
靶标序列IV-4:
Target sequence IV-4:
Target sequence IV-4:
靶标序列IV-5:
Target sequence IV-5:
Target sequence IV-5:
靶标序列IV-6:
Target sequence IV-6:
Target sequence IV-6:
靶标序列V:
Target sequence V:
Target sequence V:
靶标序列V-1:
Target sequence V-1:
Target sequence V-1:
靶标序列V-2:
Target sequence V-2:
Target sequence V-2:
靶标序列V-3:
Target sequence V-3:
Target sequence V-3:
靶标序列V-4:
Target sequence V-4:
Target sequence V-4:
靶标序列VI:
Target sequence VI:
Target sequence VI:
靶标序列VI-1:
Target sequence VI-1:
Target sequence VI-1:
靶标序列VI-2:
Target sequence VI-2:
Target sequence VI-2:
靶标序列VI-3:
Target sequence VI-3:
Target sequence VI-3:
靶标序列VII:
Target sequence VII:
Target sequence VII:
靶标序列VII-1:
Target sequence VII-1:
Target sequence VII-1:
靶标序列VII-2:
Target sequence VII-2:
Target sequence VII-2:
靶标序列VII-3:
Target sequence VII-3:
Target sequence VII-3:
靶标序列VIII:
Target sequence VIII:
Target sequence VIII:
靶标序列VIII-1:
Target sequence VIII-1:
Target sequence VIII-1:
靶标序列VIII-2:
Target sequence VIII-2:
Target sequence VIII-2:
靶标序列VIII-3:
Target sequence VIII-3:
Target sequence VIII-3:
靶标序列VIII-4:
Target sequence VIII-4:
Target sequence VIII-4:
靶标序列IX:
Target sequence IX:
Target sequence IX:
靶标序列IX-1:
Target sequence IX-1:
Target sequence IX-1:
靶标序列IX-2:
Target sequence IX-2:
Target sequence IX-2:
靶标序列IX-3:
Target sequence IX-3:
Target sequence IX-3:
靶标序列IX-4:
Target sequence IX-4:
Target sequence IX-4:
靶标序列X:
Target sequence X:
Target sequence X:
靶标序列X-1:
Target sequence X-1:
Target sequence X-1:
靶标序列X-2:
Target sequence X-2:
Target sequence X-2:
靶标序列XI:
Target sequence XI:
Target sequence XI:
靶标序列XI-1:
Target sequence XI-1:
Target sequence XI-1:
靶标序列XI-2:
Target sequence XI-2:
Target sequence XI-2:
靶标序列XII:
Target sequence XII:
Target sequence XII:
靶标序列XII-1:
Target sequence XII-1:
Target sequence XII-1:
靶标序列XII-2:
Target sequence XII-2:
Target sequence XII-2:
靶标序列XIII:
Target sequence XIII:
Target sequence XIII:
靶标序列XIII-1:
Target sequence XIII-1:
Target sequence XIII-1:
靶标序列XIII-2:
Target sequence XIII-2:
Target sequence XIII-2:
靶标序列XIV:
Target sequence XIV:
Target sequence XIV:
靶标序列XIV-1:
Target sequence XIV-1:
Target sequence XIV-1:
靶标序列XIV-2:
Target sequence XIV-2:
Target sequence XIV-2:
靶标序列XIV-3:
Target sequence XIV-3:
Target sequence XIV-3:
靶标序列XV:
Target sequence XV:
Target sequence XV:
靶标序列XV-1:
Target sequence XV-1:
Target sequence XV-1:
靶标序列XV-2:
Target sequence XV-2:
Target sequence XV-2:
1.2合成方法描述:1.2 Description of synthesis method:
通过固相亚磷酰胺法,按照核苷酸排布顺序自3'-5'方向逐一连接核苷单体。每连接一个核苷单体都包括脱保护、偶联、氧化或硫化、盖帽四步反应。其中,两个核苷酸之间采用磷酸酯连接时,连接后一个核苷单体时,包括脱保护、偶联、氧化、盖帽四步反应。两个核苷酸之间采用硫代磷酸酯连接时,连接后一个核苷单体时,包括脱保护、偶联、硫化、盖帽四步反应。本发明根据合成目标序列选取核苷酸单体,选取的核苷酸单体为本领域技术人员常用的核苷酸单体,例如合成A的核苷酸单体可以为但不限于选择腺苷-3-磷酸。应理解这些单体当存在于寡核苷酸中时通过5’-3’磷酸二酯键或者5’-3’硫代磷酸酯基互相连接,当例如按5’到3’方向最后一个核苷酸3’位置为羟基时,根据本领域技术常规手段实现。By solid phase phosphoramidite method, nucleoside monomers are connected one by one from 3'-5' direction according to the order of nucleotide arrangement. Each connection of a nucleoside monomer includes four steps of deprotection, coupling, oxidation or sulfidation, and capping. Among them, when phosphate is used to connect two nucleotides, when the latter nucleoside monomer is connected, four steps of deprotection, coupling, oxidation, and capping are included. When thiophosphate is used to connect two nucleotides, when the latter nucleoside monomer is connected, four steps of deprotection, coupling, sulfidation, and capping are included. The present invention selects nucleotide monomers according to the target sequence of synthesis, and the selected nucleotide monomers are nucleotide monomers commonly used by those skilled in the art. For example, the nucleotide monomers for synthesizing A can be, but are not limited to, adenosine-3-phosphate. It should be understood that these monomers, when present in oligonucleotides, are interconnected by 5'-3' phosphodiester bonds or 5'-3' thiophosphate groups. When, for example, the 3' position of the last nucleotide in the 5' to 3' direction is a hydroxyl group, it is achieved according to conventional means of the art.
1.3合成条件给定如下:1.3 The synthesis conditions are given as follows:
核苷单体以0.1M浓度的乙腈溶液提供,每一步的脱保护反应的条件相同,即温度为25℃,反应时间为70秒,脱保护试剂为二氯乙酸的二氯甲烷溶液(3% V/V),二氯乙酸与固相载体上4,4’-二甲氧基三苯甲基保护基的摩尔比为5:1。The nucleoside monomer was provided in a 0.1 M acetonitrile solution. The conditions for the deprotection reaction in each step were the same, i.e., the temperature was 25°C, the reaction time was 70 seconds, the deprotection reagent was a dichloroacetic acid solution in dichloromethane (3% V/V), and the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytrityl protecting group on the solid support was 5:1.
每一步偶联反应条件均相同,包括温度为25℃,固相载体上连接的核酸序列与核苷单体的摩尔比为1:10,固相载体上连接的核酸序列和偶联试剂的摩尔比为1:65,反应时
间为600秒,偶联试剂为5-乙硫基-1H-四氮唑的0.5M乙腈溶液。The reaction conditions for each step of the coupling reaction were the same, including a temperature of 25°C, a molar ratio of the nucleic acid sequence connected to the solid phase support to the nucleoside monomer of 1:10, a molar ratio of the nucleic acid sequence connected to the solid phase support to the coupling reagent of 1:65, and a reaction time of The reaction time was 600 seconds and the coupling reagent was a 0.5 M acetonitrile solution of 5-ethylthio-1H-tetrazole.
每一步氧化反应条件相同,包括温度为25℃,反应时间为15秒,氧化试剂为浓度为0.05M的碘水。碘与偶联步骤中固相载体上连接的核酸序列的摩尔比为30:1。反应在四氢呋喃:水:吡啶=3:1:1的混合溶剂中进行。The oxidation reaction conditions in each step were the same, including a temperature of 25°C, a reaction time of 15 seconds, and an oxidizing agent of 0.05 M iodine water. The molar ratio of iodine to the nucleic acid sequence connected to the solid phase support in the coupling step was 30:1. The reaction was carried out in a mixed solvent of tetrahydrofuran: water: pyridine = 3:1:1.
每一步硫化反应的条件相同,包括温度为25℃,反应时间为300秒,硫化试剂为氢化黄原素。硫化试剂与偶联步骤中固相载体上连接的核酸序列的摩尔比为120:1。反应在乙腈:吡啶=1:1的混合溶剂中进行。The conditions of each step of the sulfurization reaction are the same, including a temperature of 25°C, a reaction time of 300 seconds, and a sulfurization reagent of hydrogenated xanthan. The molar ratio of the sulfurization reagent to the nucleic acid sequence connected to the solid phase support in the coupling step is 120:1. The reaction is carried out in a mixed solvent of acetonitrile:pyridine=1:1.
每一步盖帽条件均相同,包括温度为25℃,反应时间为15秒。盖帽试剂溶液为摩尔比为1:1的CapA和CapB的混合溶液,盖帽试剂与固相载体上连接的核酸序列的摩尔比为乙酸酐:N-甲基咪唑:固相载体上连接的核酸序列=1:1:1。待最后一个核苷单体连接完成后,依次对固相载体上连接的核酸序列进行切割、脱保护、纯化、脱盐,随后冻干得到正义链和反义链;最后将两条链进行加热退火得到产品,冻干,得到冻干粉。The capping conditions are the same for each step, including a temperature of 25°C and a reaction time of 15 seconds. The capping reagent solution is a mixed solution of CapA and CapB in a molar ratio of 1:1, and the molar ratio of the capping reagent to the nucleic acid sequence connected to the solid phase carrier is acetic anhydride: N-methylimidazole: nucleic acid sequence connected to the solid phase carrier = 1:1:1. After the last nucleoside monomer is connected, the nucleic acid sequence connected to the solid phase carrier is cut, deprotected, purified, desalted, and then freeze-dried to obtain the sense chain and the antisense chain; finally, the two chains are heated and annealed to obtain the product, freeze-dried, and freeze-dried to obtain freeze-dried powder.
合成的siRNA如表1和表1-1所示,合成的siRNA修饰物如表2所示。The synthesized siRNAs are shown in Table 1 and Table 1-1, and the synthesized siRNA modifications are shown in Table 2.
实施例2:siRNA缀合物(GalNAc-siRNA)的合成Example 2: Synthesis of siRNA conjugate (GalNAc-siRNA)
2.1 siRNA缀合物具有如下式II所示的结构:
2.1 The siRNA conjugate has the structure shown in the following formula II:
2.1 The siRNA conjugate has the structure shown in the following formula II:
2.2 siRNA缀合物的合成过程2.2 Synthesis of siRNA conjugates
第一步,通过将DMTr-L96和丁二酸酐反应,得到化合物L96-A:
In the first step, DMTr-L96 and succinic anhydride are reacted to obtain compound L96-A:
In the first step, DMTr-L96 and succinic anhydride are reacted to obtain compound L96-A:
制备过程:将DMTr-L96、丁二酸酐、4-二甲基氨基吡啶和二异丙基乙胺加入二氯甲烷中,25℃下搅拌反应24小时,然后用0.5M三乙胺磷酸盐洗涤反应液,水相以二氯甲烷洗涤三次,合并有机相减压蒸干得粗品。然后柱层析纯化得到纯品L96-A。Preparation process: DMTr-L96, succinic anhydride, 4-dimethylaminopyridine and diisopropylethylamine were added to dichloromethane, stirred at 25°C for 24 hours, and then the reaction solution was washed with 0.5M triethylamine phosphate, the aqueous phase was washed three times with dichloromethane, and the organic phases were combined and evaporated to dryness under reduced pressure to obtain a crude product. Then, column chromatography was used for purification to obtain pure L96-A.
第二步,将L96-A与NH2-SPS反应得到L96-B:
In the second step, L96-A is reacted with NH 2 -SPS to obtain L96-B:
In the second step, L96-A is reacted with NH 2 -SPS to obtain L96-B:
制备过程:将L96-A、O-苯并三氮唑-四甲基脲六氟磷酸酯(HBTU)和二异丙基乙
胺(DIPEA)混合溶于乙腈中,室温搅拌5分钟得到均一溶液,加入氨甲基树脂(NH2-SPS,100-200目)至反应液体中,25℃下开始摇床反应,反应18小时后过滤,滤饼依次用二氯甲烷和乙腈洗涤,得滤饼。所得滤饼用CapA/CapB混合溶液进行盖帽反应得到L96-B,即为含有缀合分子的固相载体,然后在偶联反应下将核苷单体连接至缀合分子,随后按照前文所述的siRNA分子合成方法合成连接至缀合物分子的siRNA正义链,采用前文所述的siRNA分子合成方法合成siRNA反义链,退火生成本申请的siRNA缀合物。Preparation process: L96-A, O-benzotriazole-tetramethyluronium hexafluorophosphate (HBTU) and diisopropyl ethyl Amine (DIPEA) was mixed and dissolved in acetonitrile, stirred at room temperature for 5 minutes to obtain a uniform solution, and aminomethyl resin (NH2 - SPS, 100-200 mesh) was added to the reaction liquid, and the shaking reaction was started at 25°C. After the reaction for 18 hours, the filter cake was filtered and washed with dichloromethane and acetonitrile in sequence to obtain a filter cake. The obtained filter cake was capped with a CapA/CapB mixed solution to obtain L96-B, which is a solid phase carrier containing a conjugate molecule, and then the nucleoside monomer was connected to the conjugate molecule under a coupling reaction, and then the siRNA sense chain connected to the conjugate molecule was synthesized according to the siRNA molecule synthesis method described above, and the siRNA antisense chain was synthesized using the siRNA molecule synthesis method described above, and annealing was performed to generate the siRNA conjugate of the present application.
合成的siRNA缀合物如表3所示。The synthesized siRNA conjugates are shown in Table 3.
实施例3:siRNA及siRNA修饰物抑制MARC1基因表达Example 3: siRNA and siRNA modifications inhibit MARC1 gene expression
3.1实验材料:3.1 Experimental Materials:
HepG2细胞,购自中国科学院典型培养物保藏委员会细胞库,货号SCSP-510;HepG2 cells were purchased from the Cell Bank of Type Culture Collection Committee of the Chinese Academy of Sciences, catalog number SCSP-510;
RNA提取试剂盒,96 Kit,货号QIAGEN-74182;RNA extraction kit, 96 Kit, Catalog No. QIAGEN-74182;
RNAiMAX转染试剂,购自Invitrogen,货号13778-150; RNAiMAX transfection reagent, purchased from Invitrogen, catalog number 13778-150;
MEM培养基,购自Gibco,货号41090036;MEM medium, purchased from Gibco, catalog number 41090036;
逆转录试剂盒(Ⅲ1st Strand cDNA Synthesis Kit(+gDNA wiper)),购自Vazyme,货号R312-02;Reverse transcription kit ( Ⅲ1st Strand cDNA Synthesis Kit (+gDNA wiper), purchased from Vazyme, catalog number R312-02;
TaqManTM基因表达预混液,购自Applied Biosystems,货号4369016;TaqMan TM Gene Expression Master Mix, purchased from Applied Biosystems, catalog number 4369016;
Opti-MEM:减血清培养基,购自Gibco,货号31985070;Opti-MEM: Reduced serum medium, purchased from Gibco, catalog number 31985070;
Target MARC1 primer and probe set,购自Thermo,Hs00224227_m1;Target MARC1 primer and probe set, purchased from Thermo, Hs00224227_m1;
TaqMan Gene Expression Assay(GAPDH),购自Thermo,ID-Hs99999905_m1。TaqMan Gene Expression Assay (GAPDH), purchased from Thermo, ID-Hs99999905_m1.
3.2实验方法:3.2 Experimental methods:
3.2.1将HepG2细胞铺于96孔板的新鲜MEM培养基中培养48小时,将所培养的细胞用无PS(青霉素链霉素混合液)的MEM培养基重悬,制成密度为1.11×105/mL的细胞悬液,铺到96孔板中,每孔加90μL细胞悬液,即10000个细胞/孔。3.2.1 HepG2 cells were plated in fresh MEM medium in a 96-well plate and cultured for 48 hours. The cultured cells were resuspended in MEM medium without PS (penicillin-streptomycin mixture) to prepare a cell suspension with a density of 1.11×10 5 /mL. The cell suspension was plated in a 96-well plate and 90 μL of cell suspension was added to each well, i.e., 10,000 cells/well.
3.2.2将待测siRNA及siRNA修饰物(为便于描述,本实施例实验过程描述中统称为siRNA)的干粉以低温高速离心,然后用超纯蒸馏水(ULtraPure Distilled Water)溶解,配制成100μM siRNA母液。3.2.2 Centrifuge the dry powder of the siRNA to be tested and siRNA modifications (for ease of description, collectively referred to as siRNA in the experimental process of this example) at low temperature and high speed, and then dissolve it with ultrapure distilled water (ULtraPure Distilled Water) to prepare a 100 μM siRNA stock solution.
3.2.3配制200nM的siRNA转染稀释液Z和2nM的siRNA稀释液W3.2.3 Preparation of 200 nM siRNA transfection diluent Z and 2 nM siRNA diluent W
(1)10μM siRNA贮备液Q制备和0.1μM的siRNA贮备液E:(1) Preparation of 10 μM siRNA stock solution Q and 0.1 μM siRNA stock solution E:
a、取上述步骤3.2.2中制得的100μM siRNA母液2μL,加入18μL超纯蒸馏水,得到终浓度为10μM的siRNA贮备液Q;a. Take 2 μL of the 100 μM siRNA stock solution prepared in step 3.2.2 above, add 18 μL of ultrapure distilled water to obtain a siRNA stock solution Q with a final concentration of 10 μM;
b、取步骤a)中制得的10μM的siRNA贮备液Q 2μL,加入18μL超纯蒸馏水,得到终浓度为1μM的siRNA贮备液Y;b. Take 2 μL of the 10 μM siRNA stock solution Q prepared in step a), add 18 μL of ultrapure distilled water to obtain a siRNA stock solution Y with a final concentration of 1 μM;
c、取步骤b)中制得的1μM的siRNA贮备液Y 2μL,加入18μL超纯蒸馏水,得到终浓度为0.1μM的siRNA贮备液E;c. Take 2 μL of the 1 μM siRNA stock solution Y prepared in step b), add 18 μL of ultrapure distilled water to obtain a siRNA stock solution E with a final concentration of 0.1 μM;
(2)取上述配置好的siRNA贮备液E 2μL,加入98μL Opti-MEM,得到2nM的siRNA稀释液W;取上述配置好的siRNA贮备液Q 2μL,加入98μL Opti-MEM,得到200nM的siRNA稀释液Z;(2) Take 2 μL of the above-prepared siRNA stock solution E and add 98 μL of Opti-MEM to obtain 2 nM siRNA dilution solution W; take 2 μL of the above-prepared siRNA stock solution Q and add 98 μL of Opti-MEM to obtain 200 nM siRNA dilution solution Z;
3.2.4转染HepG2细胞3.2.4 Transfection of HepG2 cells
(1)取RNAiMAX转染试剂3μL,加入97μL Opti-MEM,得到RNAiMAX转染试剂稀释液;将RNAiMAX转染试剂稀释液与步骤3.2.3中制得的2nM siRNA稀释液W以1:1体积比混合,静置5分钟,将10μL的转染混合物加入到96孔板中转染步骤3.2.1中所培养的HepG2细胞(终体积100μL,该体系中siRNA的浓度为0.1nM)。(1) Take 3 μL RNAiMAX transfection reagent was added to 97 μL Opti-MEM to obtain RNAiMAX transfection reagent diluent; RNAiMAX transfection reagent diluent was mixed with the 2 nM siRNA diluent W prepared in step 3.2.3 at a volume ratio of 1:1, allowed to stand for 5 minutes, and 10 μL of the transfection mixture was added to a 96-well plate to transfect the HepG2 cells cultured in step 3.2.1 (final volume 100 μL, siRNA concentration in this system was 0.1 nM).
(2)取RNAiMAX转染试剂3μL,加入97μL Opti-MEM,得到RNAiMAX
转染试剂稀释液;将RNAiMAX转染试剂稀释液与步骤3.2.3中制得的200nM siRNA稀释液Z以1:1体积比混合制备成转染混合物,静置5分钟,取10μL转染混合物加入到96孔板中转染步骤3.2.1中培养的HepG2细胞(终体积100μL,该体系中siRNA的浓度为10nM)。(2) Take 3 μL RNAiMAX transfection reagent was added to 97 μL Opti-MEM to obtain RNAiMAX Transfection reagent diluent; RNAiMAX transfection reagent diluent and 200nM siRNA diluent Z prepared in step 3.2.3 were mixed in a volume ratio of 1:1 to prepare a transfection mixture, which was allowed to stand for 5 minutes. 10μL of the transfection mixture was added to a 96-well plate to transfect the HepG2 cells cultured in step 3.2.1 (final volume 100μL, the concentration of siRNA in this system was 10nM).
上述转染后培养48小时;每个浓度(10nM和0.1nM)设置2个重复。The cells were cultured for 48 hours after the above transfection; 2 replicates were set for each concentration (10 nM and 0.1 nM).
3.2.5按照RNA提取试剂盒说明书提取步骤3.2.4中获得的HepG2细胞中的总RNA。3.2.5 Extract total RNA from HepG2 cells obtained in step 3.2.4 according to the instructions of the RNA extraction kit.
3.2.6对步骤3.2.5中获得的总RNA,利用逆转录试剂盒进行逆转录至cDNA,按照以下步骤进行:3.2.6 The total RNA obtained in step 3.2.5 was reverse transcribed into cDNA using a reverse transcription kit, following the steps below:
a)按照下表用gDNA酶除去gDNA;a) Remove gDNA using gDNA enzyme according to the table below;
表6
Table 6
Table 6
42℃,2min;4℃,静置42℃, 2min; 4℃, stand
b)如下所述进行逆转录程序:b) The reverse transcription procedure was performed as follows:
表7
Table 7
Table 7
50℃,15min;85℃,5s。50℃, 15min; 85℃, 5s.
c)将步骤b)所得逆转录产物储存在4℃以进行实时PCR分析。c) The reverse transcription product obtained in step b) was stored at 4° C. for real-time PCR analysis.
3.2.7进行实时PCR分析3.2.7 Real-time PCR analysis
a)如下表所示制备qPCR反应混合物,在整个操作过程中,所有试剂都放置在冰上;a) Prepare qPCR reaction mixture as shown in the table below. Keep all reagents on ice during the entire operation.
表8
Table 8
Table 8
b)如下所述进行qPCR程序b) Perform qPCR procedure as follows
50℃,2分钟,95℃,10分钟;50°C, 2 minutes, 95°C, 10 minutes;
95℃,15秒,60℃,1分钟(该操作40个循环)。95°C, 15 seconds, 60°C, 1 minute (40 cycles of this operation).
3.2.8结果分析3.2.8 Result Analysis
a)使用Quant Studio 6Flex软件采用默认设置,自动计算Ct值;a) Use Quant Studio 6Flex software with default settings to automatically calculate Ct values;
b)使用以下公式计算基因的相对表达量:b) Calculate the relative expression of genes using the following formula:
ΔCt=Ct(MARC1基因)–Ct(GAPDH)ΔCt=Ct(MARC1 gene)–Ct(GAPDH)
ΔΔCt=ΔCt(检测样品组)-ΔCt(Mock组)ΔΔCt=ΔCt(test sample group)-ΔCt(Mock group)
相对于Mock组的mRNA表达=2-ΔΔCt。
mRNA expression relative to the Mock group = 2 −ΔΔCt .
Mock组:和检测样品组相比,未加入siRNA的组Mock group: Compared with the test sample group, the group without siRNA
抑制率(%)=(Mock组mRNA相对表达量–检测样品组mRNA相对表达量)/Mock组mRNA相对表达量×100%Inhibition rate (%) = (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group × 100%
3.3沉默实验结果3.3 Results of Silencing Experiment
选取浓度0.1nM和10nM进行测试,结果如下表9、表10所示。Concentrations of 0.1 nM and 10 nM were selected for testing, and the results are shown in Tables 9 and 10 below.
表9
Table 9
Table 9
由表9可以看出,在HepG2细胞实验中,本公开的siRNA对MARC1基因的抑制率至少为约21%,分布在约21%-约97%之间,10nM的浓度普遍比1nM的浓度显示出更高的对MARC1基因的抑制率,显示了剂量依赖效应。其中,0.1nM的N-ER-FY025096对MARC1基因的抑制率为约89%,10nM为约93%;0.1nM的N-ER-FY025102对MARC1基因的抑制率为约89%,10nM为约92%;0.1nM的N-ER-FY025175对MARC1基因的抑制率为约90%,10nM为约94%;表明这几种siRNA对MARC1基因具有很强的抑制。As can be seen from Table 9, in the HepG2 cell experiment, the inhibition rate of the siRNA disclosed in the present invention on the MARC1 gene is at least about 21%, ranging from about 21% to about 97%, and the concentration of 10nM generally shows a higher inhibition rate on the MARC1 gene than the concentration of 1nM, showing a dose-dependent effect. Among them, the inhibition rate of 0.1nM N-ER-FY025096 on the MARC1 gene is about 89%, and 10nM is about 93%; the inhibition rate of 0.1nM N-ER-FY025102 on the MARC1 gene is about 89%, and 10nM is about 92%; the inhibition rate of 0.1nM N-ER-FY025175 on the MARC1 gene is about 90%, and 10nM is about 94%, indicating that these siRNAs have strong inhibition on the MARC1 gene.
表10
Table 10
Table 10
由表10可以看出,在HepG2细胞实验中,本公开的siRNA修饰物对MARC1基因的抑制率至少为约30%,分布在约30%-约98%之间,10nM的浓度普遍比1nM的浓度显示出更高的对MARC1基因的抑制率,显示了剂量依赖效应。其中,0.1nM的N-ER-FY025096M2、N-ER-FY025096M3、N-ER-FY025096M6、N-ER-FY025096M7、N-ER-FY025096M8、N-ER-FY025096M9对MARC1基因的抑制率为约81%-约85%,10nM为约90%-约95%;0.1nM的N-ER-FY025102M2、N-ER-FY025102M3、N-ER-FY025102M4、N-ER-FY025102M5、N-ER-FY025102M6、N-ER-FY025102M7、N-ER-FY025102M8、N-ER-FY025102M9对MARC1基因的抑制率为约69%-约90%,10nM为约90%-约95%;0.1nM的N-ER-FY025175M4、N-ER-FY025175M5、N-ER-FY025175M2、N-ER-FY025175M3、N-ER-FY025175M6、N-ER-FY025175M7、N-ER-FY025175M8、N-ER-FY025175M9对MARC1基因的抑制率为约89%-约94%,10nM为约91%-约95%;表明这些siRNA修饰物对MARC1基因具有很强的抑制。As can be seen from Table 10, in the HepG2 cell experiment, the inhibition rate of the siRNA modification disclosed in the present invention on the MARC1 gene is at least about 30%, ranging from about 30% to about 98%, and the concentration of 10nM generally shows a higher inhibition rate on the MARC1 gene than the concentration of 1nM, showing a dose-dependent effect. Among them, the inhibition rates of 0.1 nM N-ER-FY025096M2, N-ER-FY025096M3, N-ER-FY025096M6, N-ER-FY025096M7, N-ER-FY025096M8, and N-ER-FY025096M9 on the MARC1 gene were about 81% to about 85%, and 10 nM was about 90% to about 95%; 0.1 nM N-ER-FY025102M2, N-ER-FY025102M3, N-ER-FY025102M4, N-ER-FY025102M5, N-ER-FY025102M6, N-ER-FY025102M7, N-ER-FY025102M8, and N-ER-FY025102M9 The inhibition rates of 2M8 and N-ER-FY025102M9 on MARC1 gene are about 69%-about 90%, and 10nM is about 90%-about 95%; the inhibition rates of 0.1nM N-ER-FY025175M4, N-ER-FY025175M5, N-ER-FY025175M2, N-ER-FY025175M3, N-ER-FY025175M6, N-ER-FY025175M7, N-ER-FY025175M8, and N-ER-FY025175M9 on MARC1 gene are about 89%-about 94%, and 10nM is about 91%-about 95%, indicating that these siRNA modifications have a strong inhibitory effect on MARC1 gene.
3.4IC50测定结果3.4 IC50 determination results
下述待测siRNA测定浓度范围设置(nM)为:10nM起,3倍稀释,8个浓度梯度:10nM,3.33nM,1.11nM,0.37nM,0.12nM,0.041nM,0.014nM,0.0045nM;再按照与3.2相似的方法进行IC50测定。The concentration range of the following siRNA to be tested was set (nM) as follows: starting from 10 nM, 3-fold dilution, 8 concentration gradients: 10 nM, 3.33 nM, 1.11 nM, 0.37 nM, 0.12 nM, 0.041 nM, 0.014 nM, 0.0045 nM; and IC 50 was determined in a manner similar to that in 3.2.
结果分析:Result analysis:
a)使用Quant Studio 6Flex软件采用默认设置,自动计算Ct值;a) Use Quant Studio 6Flex software with default settings to automatically calculate Ct values;
b)使用以下公式计算基因的相对表达量:b) Calculate the relative expression of genes using the following formula:
ΔCt=Ct(MARC1基因)–Ct(GAPDH)ΔCt=Ct(MARC1 gene)–Ct(GAPDH)
ΔΔCt=ΔCt(检测样品组)–ΔCt(Mock组),其中Mock组表示和检测样品组相比,未加入siRNA的组;ΔΔCt=ΔCt(test sample group)-ΔCt(Mock group), where the Mock group represents the group without siRNA added compared with the test sample group;
相对于Mock组的mRNA表达=2-ΔΔCt
mRNA expression relative to the Mock group = 2 - ΔΔCt
抑制率(%)=(Mock组mRNA相对表达量–检测样品组mRNA相对表达量)/Mock组mRNA相对表达量×100%Inhibition rate (%) = (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group × 100%
计算过程:以siRNA浓度的log值作为X轴,百分比抑制率为Y轴,采用分析软件GraphPad Prism 8的“log(抑制剂)vs.响应–变量斜率”,来拟合量效曲线,从而得出各个siRNA的IC50值。Calculation process: With the log value of siRNA concentration as the X-axis and the percentage inhibition rate as the Y-axis, the "log (inhibitor) vs. response-variable slope" of the analysis software GraphPad Prism 8 was used to fit the dose-effect curve to obtain the IC50 value of each siRNA.
拟合公式为:Y=Bottom+(Top–Bottom)/(1+10^((logIC50–X)×HillSlope))The fitting formula is: Y = Bottom + (Top-Bottom) / (1 + 10^(( logIC50 -X) × HillSlope))
其中:Top表示顶部平台处的百分比抑制率,曲线的Top标准一般在80%至120%;Bottom表示底部平台处的百分比抑制率,曲线的Bottom一般在-20%至20%之间;HillSlope表示百分比抑制率曲线的斜率。Among them: Top represents the percentage inhibition rate at the top platform, and the Top standard of the curve is generally between 80% and 120%; Bottom represents the percentage inhibition rate at the bottom platform, and the Bottom of the curve is generally between -20% and 20%; HillSlope represents the slope of the percentage inhibition rate curve.
结果如下表11所示。The results are shown in Table 11 below.
表11
Table 11
Table 11
实施例4:siRNA缀合物抑制MARC1基因表达的抑制率测定Example 4: Determination of the inhibition rate of siRNA conjugates in inhibiting MARC1 gene expression
4.1试验材料:4.1 Test materials:
人原代肝细胞PHH细胞,由上海药明康德新药开发有限公司提供;Human primary hepatocytes PHH cells were provided by Shanghai WuXi AppTec Pharmaceuticals Co., Ltd.;
PHH培养液:invitroGRO CP Medium,购自Bioreclamation货号:S03316;PHH culture medium: invitroGRO CP Medium, purchased from Bioreclamation, catalog number: S03316;
RNAiMAX转染试剂,购自Invitrogen,货号:13778-150; RNAiMAX transfection reagent, purchased from Invitrogen, catalog number: 13778-150;
96 Kit,购自QIAGEN,货号:QIAGEN-74182; 96 Kit, purchased from QIAGEN, catalog number: QIAGEN-74182;
FastQuant RT Kit(含gDNase),购自TianGen,货号:KR116-02;FastQuant RT Kit (containing gDNase), purchased from TianGen, catalog number: KR116-02;
FastStart Universal Probe master,购自Roche,货号:04914058001;FastStart Universal Probe master, purchased from Roche, catalog number: 04914058001;
HiScript III RT SuperMix for qPCR(+gDNA wiper),购自Vazyme,货号R323-01;HiScript III RT SuperMix for qPCR (+gDNA wiper), purchased from Vazyme, catalog number R323-01;
The MARC1 primer and probe由Sangon Biotech合成;The MARC1 primer and probe were synthesized by Sangon Biotech;
TaqMan Gene Expression Assay(GAPDH),购自Thermo,ID-Hs02786624_g1。TaqMan Gene Expression Assay (GAPDH), purchased from Thermo, ID-Hs02786624_g1.
4.2试验方法4.2 Test methods
siRNA缀合物(siRNA缀合物终浓度分别为2nM和0.2nM,复孔)通过转染进入PHH细胞,过程如下所述:取冻存的PHH细胞,复苏,计数,调整细胞到6×105细胞/mL,同时应用RNAiMax转染试剂将siRNA缀合物转入细胞,以每孔54,000个细胞的密度接种到96孔板中,每孔加入PHH培养液100μL。细胞置于5% CO2、37℃孵箱中培养。48小时后,去除培养基并收集细胞用于总RNA提取。根据试剂盒产品说明书使用96Kit提取总RNA。siRNA conjugates (final concentrations of siRNA conjugates were 2 nM and 0.2 nM, respectively, in duplicate) were transfected into PHH cells by the following process: frozen PHH cells were taken, revived, counted, and the cells were adjusted to 6 × 10 5 cells/mL, and then applied RNAiMax transfection reagent was used to transfer siRNA conjugates into cells, and 54,000 cells were seeded into 96-well plates at a density of 1:1. 100 μL of PHH culture medium was added to each well. The cells were cultured in a 5% CO 2 , 37°C incubator. After 48 hours, the culture medium was removed and the cells were collected for total RNA extraction. Use according to the kit product instructions Total RNA was extracted using 96Kit.
siRNA缀合物(siRNA缀合物终浓度分别为200nM和10nM,复孔)通过自由摄取进入PHH细胞,过程如下所述:取冻存的PHH细胞,复苏,计数,调整细胞到6×105细胞/mL,同时加入siRNA缀合物,以每孔54,000个细胞的密度接种到96孔板中,每孔加入PHH培养液100μL。细胞置于5% CO2、37℃孵箱中培养。48小时后,去除培养基并收集细胞用于总RNA提取。根据试剂盒产品说明书使用96Kit提取总RNA。siRNA conjugates (final concentrations of siRNA conjugates were 200 nM and 10 nM, respectively, in duplicate) were freely taken into PHH cells, and the process was as follows: frozen PHH cells were taken, revived, counted, and adjusted to 6×10 5 cells/mL, and siRNA conjugates were added at the same time, and inoculated into 96-well plates at a density of 54,000 cells per well, and 100 μL of PHH culture medium was added to each well. The cells were cultured in a 5% CO 2 , 37°C incubator. After 48 hours, the culture medium was removed and the cells were collected for total RNA extraction. Use according to the kit product instructions Total RNA was extracted using 96Kit.
利用逆转录试剂盒进行逆转录至cDNA,按照以下步骤进行:
Perform reverse transcription to cDNA using a reverse transcription kit and follow these steps:
(1)按照下表12用gDNA酶除去gDNA;(1) Remove gDNA using gDNA enzyme according to Table 12 below;
表12
Table 12
Table 12
42℃,2min;4℃,静置42℃, 2min; 4℃, stand
(2)将4μL 5×HiScript III qRT SuperMix直接加入步骤(1)中的反应板。运行程序:37℃持续15分钟,85℃持续5秒钟。(2) Add 4 μL 5×HiScript III qRT SuperMix directly to the reaction plate in step (1). Run the program: 37°C for 15 minutes, 85°C for 5 seconds.
(3)通过qPCR检测目的基因cDNA。(3) Detect the target gene cDNA by qPCR.
表13
Table 13
Table 13
表14
Table 14
Table 14
如下所述进行qPCR程序The qPCR procedure was performed as follows
95℃,10分钟;95°C, 10 minutes;
95℃,15秒,60℃,1分钟(该操作40个循环)。95°C, 15 seconds, 60°C, 1 minute (40 cycles of this operation).
结果分析:Result analysis:
a)使用Quant Studio 7软件采用默认设置,自动计算Ct值;a) Use Quant Studio 7 software with default settings to automatically calculate Ct values;
b)使用以下公式计算基因的相对表达量:b) Calculate the relative expression of genes using the following formula:
ΔCt=Ct(MARC1基因)–Ct(GAPDH)ΔCt=Ct(MARC1 gene)–Ct(GAPDH)
ΔΔCt=ΔCt(检测样品组)–ΔCt(Mock组),其中Mock组表示和检测样品组相比,未加入siRNA缀合物的组;ΔΔCt=ΔCt(test sample group)−ΔCt(Mock group), where the Mock group represents a group without the addition of siRNA conjugates compared with the test sample group;
相对于Mock组的mRNA表达=2-ΔΔCt
mRNA expression relative to the Mock group = 2 - ΔΔCt
抑制率(%)=(Mock组mRNA相对表达量–检测样品组mRNA相对表达量)/Mock组mRNA相对表达量×100%Inhibition rate (%) = (relative expression of mRNA in the Mock group – relative expression of mRNA in the test sample group) / relative expression of mRNA in the Mock group × 100%
实验结果如表15所示。The experimental results are shown in Table 15.
表15 siRNA缀合物抑制MARC1基因表达的抑制率
Table 15 Inhibition rate of siRNA conjugates in inhibiting MARC1 gene expression
Table 15 Inhibition rate of siRNA conjugates in inhibiting MARC1 gene expression
由表15可以看出,在pHH细胞实验中,本公开的siRNA缀合物对MARC1基因的抑制率至少为约36%,分布在约36%-约94%之间,在转染和自由摄取两种方式下,均显示了剂量依赖效应;其中,在自由摄取方式下,10nM的N-ER-FY025096M2L96、N-ER-FY025096M3L96、N-ER-FY025096M6L96、N-ER-FY025096M7L96、N-ER-FY025096M8L96、N-ER-FY025096M9L96对MARC1基因的抑制率为约72%-约77%,200nM为约84%-约89%,在转染方式下,0.2nM的N-ER-FY025096M2L96、N-ER-FY025096M3L96、N-ER-FY025096M6L96、N-ER-FY025096M7L96、N-ER-FY025096M8L96、N-ER-FY025096M9L96对MARC1基因的抑制率为约70%-约74%,2nM为约87%-约89%;在自由摄取方式下,10nM的N-ER-FY025102M2L96、N-ER-FY025102M3L96、N-ER-FY025102M6L96、N-ER-FY025102M7L96、N-ER-FY025102M8L96、N-ER-FY025102M9L96对MARC1基因的抑制率为约81%-约83%,200nM为约85%-约89%,在转染方式下,0.2nM的N-ER-FY025102M2L96、N-ER-FY025102M3L96、N-ER-FY025102M6L96、N-ER-FY025102M7L96、
N-ER-FY025102M8L96、N-ER-FY025102M9L96对MARC1基因的抑制率为约80%-约84%,2nM为约83%-约90%;在自由摄取方式下,10nM的N-ER-FY025175M2L96、N-ER-FY025175M3L96、N-ER-FY025175M6L96、N-ER-FY025175M7L96、N-ER-FY025175M8L96、N-ER-FY025175M9L96对MARC1基因的抑制率为约87%-约93%,200nM为约88%-约94%,在转染方式下,0.2nM的N-ER-FY025175M2L96、N-ER-FY025175M3L96、N-ER-FY025175M6L96、N-ER-FY025175M7L96、N-ER-FY025175M8L96、N-ER-FY025175M9L96对MARC1基因的抑制率为约86%-约88%,2nM为约90%-约93%;表明这些siRNA缀合物对MARC1基因具有很强的抑制。As can be seen from Table 15, in the pHH cell experiment, the inhibition rate of the siRNA conjugates disclosed in the present invention on the MARC1 gene was at least about 36%, ranging from about 36% to about 94%, and showed a dose-dependent effect in both transfection and free uptake. In the free uptake method, 10 nM N-ER-FY025096M2L96, N-ER-FY025096M3L96, N-ER-FY025096M6L96, N-ER -FY025096M7L96, N-ER-FY025096M8L96, and N-ER-FY025096M9L96 showed an inhibition rate of about 72% to about 77% on the MARC1 gene, and about 84% to about 89% at 200 nM. Under the transfection mode, 0.2 nM of N-ER-FY025096M2L96, N-ER-FY025096M3L96, N-ER-FY025096M6L96, and N-ER-FY025096M7L96 showed an inhibition rate of about 72% to about 77% on the MARC1 gene, and about 84% to about 89% at 200 nM. The inhibition rates of 5096M7L96, N-ER-FY025096M8L96, and N-ER-FY025096M9L96 on the MARC1 gene were about 70% to about 74%, and 2nM was about 87% to about 89%; under the free uptake method, 10nM N-ER-FY025102M2L96, N-ER-FY025102M3L96, N-ER-FY025102M6L96, N-ER-FY025102M The inhibition rate of MARC1 gene by N-ER-FY025102M7L96, N-ER-FY025102M8L96, and N-ER-FY025102M9L96 was about 81% to about 83%, and 200nM was about 85% to about 89%. Under the transfection method, 0.2nM N-ER-FY025102M2L96, N-ER-FY025102M3L96, N-ER-FY025102M6L96, N-ER-FY025102M7L96, The inhibition rate of N-ER-FY025102M8L96 and N-ER-FY025102M9L96 on the MARC1 gene was about 80% to about 84%, and 2nM was about 83% to about 90%; under free uptake mode, the inhibition rate of 10nM N-ER-FY025175M2L96, N-ER-FY025175M3L96, N-ER-FY025175M6L96, N-ER-FY025175M7L96, N-ER-FY025175M8L96, and N-ER-FY025175M9L96 on the MARC1 gene was about 87% - about 93%, 200nM is about 88% - about 94%, under transfection mode, 0.2nM of N-ER-FY025175M2L96, N-ER-FY025175M3L96, N-ER-FY025175M6L96, N-ER-FY025175M7L96, N-ER-FY025175M8L96, N-ER-FY025175M9L96 has an inhibition rate of about 86% - about 88%, and 2nM is about 90% - about 93%, indicating that these siRNA conjugates have a strong inhibitory effect on the MARC1 gene.
实施例5:siRNA缀合物在表达人MARC1(hMARC1)基因的小鼠体内沉默效果Example 5: Silencing effect of siRNA conjugates in mice expressing the human MARC1 (hMARC1) gene
5.1AAV构建过表达hMARC1基因小鼠模型5.1 Construction of hMARC1 gene overexpression mouse model by AAV
6-8周龄的C57BL/6小鼠(由北京维通利华实验动物技术有限公司提供)进入设施,适应性喂养3-5天后,尾静脉单次注射hMARC1基因的腺相关病毒pAAV[Exp]-CBh>SEAP:{MARC1 part 3'UTR}(病毒由云舟生物科技(广州)股份有限公司制备,病毒ID:VB230627-1558gqe)进行靶基因过表达造模,给药体积:100μL(3*1011vg)/只,随后普通饲料喂养。6-8 week old C57BL/6 mice (provided by Beijing Weitong Lihua Experimental Animal Technology Co., Ltd.) were brought into the facility. After 3-5 days of adaptive feeding, a single injection of adeno-associated virus pAAV[Exp]-CBh>SEAP:{MARC1 part 3'UTR} (the virus was prepared by Yunzhou Biotechnology (Guangzhou) Co., Ltd., virus ID: VB230627-1558gqe) expressing hMARC1 gene was performed through the tail vein for target gene overexpression modeling. The administration volume was 100 μL (3*10 11 vg)/mouse, and then the mice were fed with normal feed.
5.2针对hMARC1小鼠模型体内沉默siRNA药效考察5.2 In vivo efficacy study of siRNA silencing in hMARC1 mouse model
AAV病毒注射14日后,分组(每组6只),小鼠皮下给药单一1,3,10mg/kg(mpk)剂量的N-ER-FY025096M2L96、N-ER-FY025102M2L96、N-ER-FY025103M2L96、N-ER-FY025096M6L96、N-ER-FY025102M6L96、N-ER-FY025172M6L96、N-ER-FY025173M6L96、N-ER-FY025174M6L96、N-ER-FY025175M6L96、N-ER-FY025096M8L96、N-ER-FY025177M6L96、N-ER-FY025177M8L96、N-ER-FY025102M8L96、N-ER-FY025174M8L96和N-ER-FY025175M8L96,给药体积为5μL/g,溶剂为无RNA酶的无菌PBS,空白组注射同等体积的无RNA酶的无菌PBS。给药后第7天、14天、21天、28天、35天、42天和49天进行检测SEAP蛋白表达量(即hMARC1蛋白表达量)。Fourteen days after AAV virus injection, the mice were divided into groups (6 mice per group) and subcutaneously administered with a single 1, 3, or 10 mg/kg (mpk) dose of N-ER-FY025096M2L96, N-ER-FY025102M2L96, N-ER-FY025103M2L96, N-ER-FY025096M6L96, N-ER-FY025102M6L96, N-ER-FY025172M6L96, N-ER-FY025173M6L96, and N-ER-FY02 The administration volume was 5 μL/g, and the solvent was RNase-free sterile PBS. The blank group was injected with the same volume of RNase-free sterile PBS. The SEAP protein expression (i.e., hMARC1 protein expression) was detected on days 7, 14, 21, 28, 35, 42, and 49 after administration.
hMARC1的抑制率计算公式为:抑制率(%)=(1-检测样品组SEAP蛋白相对表达量/空白组SEAP蛋白相对表达量)*100%The formula for calculating the inhibition rate of hMARC1 is: Inhibition rate (%) = (1-relative expression of SEAP protein in the test sample group/relative expression of SEAP protein in the blank group) * 100%
表16 siRNA缀合物对hMARC1的抑制率
Table 16 Inhibition rate of siRNA conjugates on hMARC1
Table 16 Inhibition rate of siRNA conjugates on hMARC1
从表16可以看出,本申请的siRNA缀合物在体内对hMARC1基因具有较高的抑制活性,能够长时间降低hMARC1蛋白水平。从药物N-ER-FY025096M2L96和N-ER-FY025102M2L96不同剂量下的实验结果可知,siRNA缀合物剂量越高,抑制率越高,抑制时间越长。此外,在第14天,3mpk剂量下,药物N-ER-FY025096M6L96、N-ER-FY025096M8L96、N-ER-FY025102M8L96、N-ER-FY025175M8L96均能达到80%以上的抑制率。siRNA缀合物剂量越高,抑制率越高,抑制时间越长。其中,N-ER-FY025096M2L96的1mpk剂量,对hMARC1的抑制率在第7-49天内为约29%-约60%,3mpk在第7-49天内为约55%-约79%,10mpk在第7-49天内为约71%-约87%;N-ER-FY025102M2L96的1mpk剂量,对hMARC1的抑制率在第7-49内为约24%-约60%,3mpk在第7-49天内为约47%-约78%,10mpk在第7-49天内为约76%-约84%;3mpk的N-ER-FY025096M6L96对hMARC1的抑制率在第7-49天内为约70%-约82%;3mpk的N-ER-FY025102M6L9对hMARC1的抑制率在第7-49天内为约36%-约71%;3mpk的N-ER-FY025175M6L96对hMARC1的抑制率在第7-49天内为约53%-约82%;3mpk的N-ER-FY025096M8L96对hMARC1的抑制率在第7-49天内为约68%-约83%;3mpk的N-ER-FY025102M8L96对hMARC1的抑制率在第7-49天内为约73%-约87%;3mpk的N-ER-FY025175M8L96对hMARC1的抑制率在第7-49天内为约68%-约86%。As can be seen from Table 16, the siRNA conjugates of the present application have a high inhibitory activity on the hMARC1 gene in vivo and can reduce the hMARC1 protein level for a long time. From the experimental results of drugs N-ER-FY025096M2L96 and N-ER-FY025102M2L96 at different doses, it can be seen that the higher the dose of the siRNA conjugate, the higher the inhibition rate and the longer the inhibition time. In addition, on the 14th day, at a dose of 3mpk, the drugs N-ER-FY025096M6L96, N-ER-FY025096M8L96, N-ER-FY025102M8L96, and N-ER-FY025175M8L96 can all achieve an inhibition rate of more than 80%. The higher the dose of the siRNA conjugate, the higher the inhibition rate and the longer the inhibition time. Among them, the inhibition rate of hMARC1 of 1 mpk dose of N-ER-FY025096M2L96 was about 29%-about 60% within 7-49 days, 3 mpk was about 55%-about 79% within 7-49 days, and 10 mpk was about 71%-about 87% within 7-49 days; the inhibition rate of hMARC1 of 1 mpk dose of N-ER-FY025102M2L96 was about 24%-about 60% within 7-49 days, 3 mpk was about 47%-about 78% within 7-49 days, and 10 mpk was about 76%-about 84% within 7-49 days; the inhibition rate of hMARC1 of 3 mpk dose of N-ER-FY025096M6L96 was about 70%-about 82% within 7-49 days; The inhibition rate of N-ER-FY025102M6L9 on hMARC1 at 3mpk was about 36% to about 71% within 7-49 days; the inhibition rate of N-ER-FY025175M6L96 on hMARC1 at 3mpk was about 53% to about 82% within 7-49 days; the inhibition rate of N-ER-FY025096M8L96 on hMARC1 at 3mpk was about 68% to about 83% within 7-49 days; the inhibition rate of N-ER-FY025102M8L96 on hMARC1 at 3mpk was about 73% to about 87% within 7-49 days; the inhibition rate of N-ER-FY025175M8L96 on hMARC1 at 3mpk was about 68% to about 86% within 7-49 days.
本公开的上述实施例仅是为清楚地说明本公开所作的举例,而并非是对本公开的实施方式的限定。对于所属领域的普通技术人员来说,在上述说明的基础上还可以做出其它不同形式的变化或变动。这里无需也无法对所有的实施方式予以穷举。凡在本公开的精神和原则之内所作的任何修改、等同替换和改进等,均应包含在本公开权利要求的保护范围之内。
The above embodiments of the present disclosure are merely examples for clearly illustrating the present disclosure, and are not intended to limit the implementation methods of the present disclosure. For those skilled in the art, other different forms of changes or modifications can be made based on the above description. It is not necessary and impossible to list all implementation methods here. Any modifications, equivalent substitutions, improvements, etc. made within the spirit and principles of the present disclosure shall be included in the protection scope of the claims of the present disclosure.
Claims (47)
- 一种双链核糖核酸,所述双链核糖核酸包括正义链和反义链,所述正义链与所述反义链反向互补和/或基本上反向互补形成所述双链核糖核酸的双链区;A double-stranded RNA, comprising a sense strand and an antisense strand, wherein the sense strand is reverse complementary to the antisense strand and/or substantially reverse complementary to form a double-stranded region of the double-stranded RNA;其中,所述正义链包含与靶标序列中至少15个连续核苷酸的差异不超过3个核苷酸的序列A,所述反义链包含与靶标序列中至少15个连续核苷酸的反向互补序列的差异不超过3个核苷酸的序列B;The sense strand comprises a sequence A that differs by no more than 3 nucleotides from at least 15 consecutive nucleotides in the target sequence, and the antisense strand comprises a sequence B that differs by no more than 3 nucleotides from the reverse complementary sequence of at least 15 consecutive nucleotides in the target sequence;所述靶标序列选自如SEQ ID NO:1~9和812~817任一项所示的核苷酸序列和SEQ ID NO:1~9和812~817任一项中包含的至少15个连续核苷酸组成的序列。The target sequence is selected from a nucleotide sequence shown in any one of SEQ ID NO: 1 to 9 and 812 to 817 and a sequence consisting of at least 15 consecutive nucleotides contained in any one of SEQ ID NO: 1 to 9 and 812 to 817.
- 根据权利要求1所述的双链核糖核酸,其中,所述靶标序列选自如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列,所述正义链包含如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中至少15个连续核苷酸组成的序列A,所述反义链包含如SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中至少15个连续核苷酸组成的序列反向互补和/或基本上反向互补的序列B。The double-stranded ribonucleic acid according to claim 1, wherein the target sequence is selected from the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, the positive strand comprises a sequence A consisting of at least 15 consecutive nucleotides in the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, and the antisense strand comprises a sequence B that is reverse complementary and/or substantially reverse complementary to a sequence consisting of at least 15 consecutive nucleotides in the nucleotide sequence as shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830.
- 根据权利要求1或2所述的双链核糖核酸,其中,所述正义链由15-28个核苷酸组成,优选19-25个核苷酸,更优选19-23个核苷酸,更优选19、21或23个核苷酸。The double-stranded ribonucleic acid according to claim 1 or 2, wherein the sense strand consists of 15-28 nucleotides, preferably 19-25 nucleotides, more preferably 19-23 nucleotides, more preferably 19, 21 or 23 nucleotides.
- 根据权利要求3所述的双链核糖核酸,其中,所述正义链的核苷酸序列是与SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中的15-28个连续核苷酸组成的序列相比差异不超过1个核苷酸的序列A,优选19-25个连续核苷酸,更优选19-23个连续核苷酸,更优选19、21或23个核苷酸。The double-stranded ribonucleic acid according to claim 3, wherein the nucleotide sequence of the positive chain is a sequence A that differs by no more than 1 nucleotide compared to a sequence consisting of 15-28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, preferably 19-25 consecutive nucleotides, more preferably 19-23 consecutive nucleotides, and more preferably 19, 21 or 23 nucleotides.
- 根据权利要求1-4任一项所述的双链核糖核酸,其中,所述反义链由15-28个核苷酸组成,优选19-25个核苷酸,更优选19-23个核苷酸,更优选19、21或23个核苷酸。The double-stranded ribonucleic acid according to any one of claims 1 to 4, wherein the antisense strand consists of 15-28 nucleotides, preferably 19-25 nucleotides, more preferably 19-23 nucleotides, more preferably 19, 21 or 23 nucleotides.
- 根据权利要求5所述的双链核糖核酸,其中,所述反义链的核苷酸序列是与SEQ ID NO:10~37、799~811和818~830任一项所示的核苷酸序列中的15-28个连续核苷酸组成的序列的反向互补序列相比差异不超过1个核苷酸的序列B,优选19-25个连续核苷酸,更优选19-23个连续核苷酸,更优选19、21或23个核苷酸。The double-stranded ribonucleic acid according to claim 5, wherein the nucleotide sequence of the antisense strand is a sequence B having a difference of no more than 1 nucleotide compared to the reverse complementary sequence of a sequence consisting of 15-28 consecutive nucleotides in the nucleotide sequence shown in any one of SEQ ID NOs: 10-37, 799-811 and 818-830, preferably 19-25 consecutive nucleotides, more preferably 19-23 consecutive nucleotides, more preferably 19, 21 or 23 nucleotides.
- 根据权利要求1-6任一项所述的双链核糖核酸,其中,所述双链区的长度为15-25个核苷酸,优选19-23个核苷酸,更优选19-21个核苷酸,更优选19、21或23个核苷酸。The double-stranded ribonucleic acid according to any one of claims 1 to 6, wherein the length of the double-stranded region is 15-25 nucleotides, preferably 19-23 nucleotides, more preferably 19-21 nucleotides, more preferably 19, 21 or 23 nucleotides.
- 根据权利要求1-7任一项所述的双链核糖核酸,其中,The double-stranded RNA according to any one of claims 1 to 7, wherein所述正义链与所述反义链互补形成所述双链区,且所述正义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述反义链的3’末端形成平末端;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the sense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the antisense strand forms a blunt end; or,所述正义链与所述反义链互补形成所述双链区,且所述反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸,所述正义链的3’末端形成平末端;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region, and the 3' end of the sense strand forms a blunt end; or,所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均具有1-2个延伸出所述双链区的突出的核苷酸;或者,The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand each have 1-2 protruding nucleotides extending out of the double-stranded region; or,所述正义链与所述反义链互补形成所述双链区,且所述正义链与所述反义链的3’末端均形成平末端。The sense strand and the antisense strand complement each other to form the double-stranded region, and the 3' ends of the sense strand and the antisense strand both form blunt ends.
- 根据权利要求1-8任一项所述的双链核糖核酸,其中,所述正义链与所述反义链选自如下组合:The double-stranded RNA according to any one of claims 1 to 8, wherein the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表1、表1-1所示的任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链;The sense strand comprises the sense strand of any one of the siRNAs shown in Table 1 and Table 1-1 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA;优选地,所述正义链与所述反义链选自如下组合:Preferably, the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表1所示的siRNA 262、264和330中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs 262, 264 and 330 shown in Table 1 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
- 根据权利要求1-9任一项所述的双链核糖核酸,其中,所述正义链中每个核苷酸 彼此独立地为修饰的核苷酸或未修饰的核苷酸,和/或,所述反义链中每个核苷酸彼此独立地为修饰的核苷酸或未修饰的核苷酸。The double-stranded ribonucleic acid according to any one of claims 1 to 9, wherein each nucleotide in the sense strand Each nucleotide in the antisense strand is independently a modified nucleotide or an unmodified nucleotide, and/or each nucleotide in the antisense strand is independently a modified nucleotide or an unmodified nucleotide.
- 根据权利要求1-10任一项所述的双链核糖核酸,其中,所述正义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接,和/或,所述反义链中任意相连的两个核苷酸由磷酸二酯键或硫代磷酸二酯键连接。The double-stranded ribonucleic acid according to any one of claims 1 to 10, wherein any two nucleotides connected in the sense strand are connected by a phosphodiester bond or a phosphorothioate diester bond, and/or any two nucleotides connected in the antisense strand are connected by a phosphodiester bond or a phosphorothioate diester bond.
- 根据权利要求1-11任一项所述的双链核糖核酸,其中,所述反义链的5’末端核苷酸连接5’磷酸基团或5’磷酸衍生基团,或,所述反义链的5’末端核苷酸不连接5’磷酸基团或5’磷酸衍生基团。The double-stranded ribonucleic acid according to any one of claims 1 to 11, wherein the 5' terminal nucleotide of the antisense strand is connected to a 5' phosphate group or a 5' phosphate derivative group, or the 5' terminal nucleotide of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group.
- 根据权利要求1-12任一项所述的双链核糖核酸,其中,所述双链核糖核酸为siRNA。The double-stranded ribonucleic acid according to any one of claims 1 to 12, wherein the double-stranded ribonucleic acid is siRNA.
- 根据权利要求1-13任一项所述的双链核糖核酸,其中,所述双链核糖核酸为用于抑制MARC1基因表达的siRNA。The double-stranded ribonucleic acid according to any one of claims 1 to 13, wherein the double-stranded ribonucleic acid is siRNA for inhibiting the expression of MARC1 gene.
- 一种双链核糖核酸修饰物,其为如权利要求1-14任一项所述的双链核糖核酸的修饰物,所述双链核糖核酸修饰物包含如下至少一种的化学修饰:A double-stranded RNA modified substance, which is a double-stranded RNA modified substance according to any one of claims 1 to 14, wherein the double-stranded RNA modified substance comprises at least one of the following chemical modifications:(1)正义链中至少一个核苷酸的修饰,(1) modification of at least one nucleotide in the sense strand,(2)正义链中至少一个位置处的磷酸二酯键的修饰,(2) modification of the phosphodiester bond at at least one position in the sense strand,(3)反义链中至少一个核苷酸的修饰,(3) modification of at least one nucleotide in the antisense strand,(4)反义链中至少一个位置处的磷酸二酯键的修饰;(4) modification of the phosphodiester bond at at least one position in the antisense strand;任选地,所述双链核糖核酸的正义链中序列A的3’末端连接由1-2个核苷酸组成的序列D,优选由1-2个胸腺嘧啶脱氧核糖核苷酸组成的序列D;和/或,所述双链核糖核酸的反义链中序列B的3’末端连接由1-2个核苷酸组成的序列E,优选由1-2个胸腺嘧啶脱氧核糖核苷酸组成的序列E;和/或,所述双链核糖核酸的正义链中序列A的3’末端排除1-2个核苷酸后形成序列A’;Optionally, the 3' end of sequence A in the sense strand of the double-stranded RNA is connected to a sequence D consisting of 1-2 nucleotides, preferably a sequence D consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence B in the antisense strand of the double-stranded RNA is connected to a sequence E consisting of 1-2 nucleotides, preferably a sequence E consisting of 1-2 thymine deoxyribonucleotides; and/or, the 3' end of sequence A in the sense strand of the double-stranded RNA excludes 1-2 nucleotides to form sequence A';可选地,所述双链核糖核酸修饰物的正义链和反义链选自如下的序列组合:Optionally, the sense strand and antisense strand of the double-stranded RNA modification are selected from the following sequence combinations:所述正义链的核苷酸序列为序列A所示的序列,所述反义链的核苷酸序列为序列B所示的序列;The nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;或者,所述正义链的核苷酸序列为序列A所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E;或者,所述正义链的核苷酸序列为序列A连接序列D所示的序列,所述反义链的核苷酸序列为序列B所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;或者,所述正义链的核苷酸序列为序列A连接序列D所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown by sequence A connected to sequence D, and the nucleotide sequence of the antisense strand is the sequence shown by sequence B connected to sequence E;或者,所述正义链的核苷酸序列为序列A’所示的序列,所述反义链的核苷酸序列为序列B所示的序列;Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A', and the nucleotide sequence of the antisense strand is the sequence shown in sequence B;或者,所述正义链的核苷酸序列为序列A’所示的序列,所述反义链的核苷酸序列为序列B连接序列E所示的序列。Alternatively, the nucleotide sequence of the sense strand is the sequence shown in sequence A’, and the nucleotide sequence of the antisense strand is the sequence shown in sequence B connected to sequence E.
- 根据权利要求15所述的双链核糖核酸修饰物,其中,所述核苷酸的修饰选自2’-氟代修饰、2’-烷氧基修饰、2’-取代的烷氧基修饰、2’-烷基修饰、2’-取代的烷基修饰、2’-脱氧修饰、核苷酸衍生物修饰或其中任意两种以上的组合。The double-stranded RNA modified substance according to claim 15, wherein the modification of the nucleotide is selected from 2'-fluoro modification, 2'-alkoxy modification, 2'-substituted alkoxy modification, 2'-alkyl modification, 2'-substituted alkyl modification, 2'-deoxy modification, nucleotide derivative modification or a combination of any two or more thereof.
- 根据权利要求15或16所述的双链核糖核酸修饰物,其中,所述核苷酸的修饰选自2’-F修饰、2’-O-CH3修饰、2’-O-CH2-CH2-O-CH3修饰、2’-O-CH2-CH=CH2修饰、2’-CH2-CH2-CH=CH2修饰、2’-脱氧修饰,核苷酸衍生物修饰或其中任意两种以上的组合。The double-stranded ribonucleic acid modified substance according to claim 15 or 16, wherein the modification of the nucleotide is selected from 2'-F modification, 2'-O-CH 3 modification, 2'-O-CH 2 -CH 2 -O-CH 3 modification, 2'-O-CH 2 -CH=CH 2 modification, 2'-CH 2 -CH 2 -CH=CH 2 modification, 2'-deoxy modification, nucleotide derivative modification or a combination of any two or more thereof.
- 根据权利要求16或17所述的双链核糖核酸修饰物,其中,所述核苷酸衍生物修饰中的核苷酸衍生物选自异核苷酸、LNA、ENA、cET、UNA或GNA。The double-stranded RNA modification according to claim 16 or 17, wherein the nucleotide derivative in the nucleotide derivative modification is selected from isonucleotides, LNA, ENA, cET, UNA or GNA.
- 根据权利要求15-18任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端 方向,所述正义链中第7位、第9位、第10位和第11位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述正义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。The double-stranded RNA modified substance according to any one of claims 15 to 18, wherein the Direction, the ribonucleotides at positions 7, 9, 10 and 11 in the sense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the sense strand are 2'-O-CH 3 modified ribonucleotides.
- 根据权利要求15-19任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述正义链包含位于如下所示位置处的硫代磷酸二酯键:The double-stranded RNA modification according to any one of claims 15 to 19, wherein, from the 5' end to the 3' end, the sense strand comprises a phosphorothioate diester bond located at the following position:所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the sense strand;所述正义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the sense strand;所述正义链3’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 3' end of the sense strand;或者,or,所述正义链包含位于如下所示位置处的硫代磷酸二酯键:The sense strand contains phosphorothioate diester bonds located at the positions shown below:所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting from the 5' end of the sense strand.
- 根据权利要求15-20任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述反义链中任意奇数位置处的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,所述反义链中任意偶数位置处的核糖核苷酸为2’-F修饰的核糖核苷酸;The double-stranded ribonucleic acid modified substance according to any one of claims 15 to 20, wherein, from the 5' end to the 3' end, the ribonucleotide at any odd position in the antisense strand is a 2'-O-CH 3- modified ribonucleotide, and the ribonucleotide at any even position in the antisense strand is a 2'-F-modified ribonucleotide;或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第8位、第9位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 8, 9, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;或者,沿5’末端向3’末端方向,所述反义链中第2位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第6位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸;Alternatively, along the 5' end to the 3' end, the ribonucleotides at positions 2, 14 and 16 in the antisense strand are 2'-F modified ribonucleotides, the ribonucleotide at position 6 in the antisense strand is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense strand are 2'-O-CH 3 modified ribonucleotides;或者,沿5’末端向3’末端方向,所述反义链中第2位、第6位、第14位和第16位的核糖核苷酸为2’-F修饰的核糖核苷酸,所述反义链中第7位的核糖核苷酸为核苷酸衍生物GNA修饰的核糖核苷酸,所述反义链中其余位置的核糖核苷酸为2’-O-CH3修饰的核糖核苷酸。Alternatively, along the direction from the 5' end to the 3' end, the ribonucleotides at positions 2, 6, 14 and 16 in the antisense chain are 2'-F modified ribonucleotides, the ribonucleotide at position 7 in the antisense chain is a ribonucleotide modified with the nucleotide derivative GNA, and the ribonucleotides at the remaining positions in the antisense chain are 2'-O- CH3 modified ribonucleotides.
- 根据权利要求15-21任一项所述的双链核糖核酸修饰物,其中,沿5’末端向3’末端方向,所述反义链的5’末端的核苷酸不连接5’磷酸基团或5’磷酸衍生基团,或,所述反义链的5’末端的核苷酸连接5’磷酸基团或5’磷酸衍生基团。The double-stranded ribonucleic acid modification according to any one of claims 15 to 21, wherein, in the direction from the 5' end to the 3' end, the nucleotide at the 5' end of the antisense strand is not connected to a 5' phosphate group or a 5' phosphate derivative group, or the nucleotide at the 5' end of the antisense strand is connected to a 5' phosphate group or a 5' phosphate derivative group.
- 根据权利要求15-22任一项所述的双链核糖核酸修饰物,其中,所述反义链包含位于如下所示位置处的硫代磷酸二酯键:The double-stranded RNA modification according to any one of claims 15 to 22, wherein the antisense strand comprises a phosphorothioate diester bond located at the following position:所述反义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the antisense strand;所述反义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the antisense strand;所述反义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the antisense strand;所述反义链3’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting from the 3' end of the antisense strand.
- 根据权利要求15-23任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物的正义链具有如(a1)-(a5)任一项所示的结构:The double-stranded RNA modified substance according to any one of claims 15 to 23, wherein the sense strand of the double-stranded RNA modified substance has a structure as shown in any one of (a 1 ) to (a 5 ):(a1)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-T-(s)-T-3’,(a 1 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(a2)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(a 2 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(a3)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(a 3 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(a4)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14- mN15-mN16-mN17-mN18-mN19-3’,(a 4 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 - mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -3',(a5)5’-mN1-(s)-mN2-(s)-mN3-mN4-mN5-mN6-N7f-mN8-N9f-N10f-N11f-mN12-mN13-mN14-mN15-mN16-mN17-mN18-mN19-mN20-mN21-3’;(a 5 )5'-mN 1 -(s)-mN 2 -(s)-mN 3 -mN 4 -mN 5 -mN 6 -N 7 f-mN 8 -N 9 fN 10 fN 11 f-mN 12 -mN 13 -mN 14 -mN 15 -mN 16 -mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -3';其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,wherein N 1 -N 23 are independently selected from ribonucleotides whose bases are A, U, C or G,大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,The capital letter T represents a deoxyribonucleotide with thymine as its base.小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,The lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,The lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接。-(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.
- 根据权利要求15-24任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物的反义链具有如(b1)-(b27)任一项所示的结构:The double-stranded RNA modified substance according to any one of claims 15 to 24, wherein the antisense strand of the double-stranded RNA modified substance has a structure as shown in any one of (b 1 ) to (b 27 ):(b1)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-T-(s)-T-3’,(b 1 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-T-(s)-T-3',(b2)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1 4f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 2 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b3)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 3 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b4)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 4 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b5)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 5 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b6)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-(s)-N20f-(s)-mN21-3’,(b 6 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -(s)-N 20 f-(s)-mN 21 -3',(b7)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N1 4f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 7 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 1 4 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b8)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 8 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b9)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 9 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b10)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 10 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b11)5’-P1mN1-(s)-N2f-(s)-mN3-N4f-mN5-N6f-mN7-N8f-mN9-N10f-mN11-N12f-mN13-N14f-mN15-N16f-mN17-N18f-mN19-N20f-mN21-(s)-N22f-(s)-mN23-3’,(b 11 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -N 4 f-mN 5 -N 6 f-mN 7 -N 8 f-mN 9 -N 10 f- mN 11 -N 12 f-mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -N 18 f-mN 19 -N 20 f-mN 21 -(s)-N 22 f-(s)- mN 23 -3',(b12)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 12 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(b13)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 13 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(b14)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-[GNA]N6-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 14 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -[GNA]N 6 -mN 7 -mN 8 -mN 9 -mN 10 -mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3' ,(b15)5’-P1mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-[GNA]N7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 15 )5'-P1mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-[GNA]N 7 -mN 8 -mN 9 -mN 10 - mN 11 -mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3 ',(b16)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 16 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b17)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 17 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b18)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13 -N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 18 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 - mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b19)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-T-(s)-T-3’,(b 19 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-T-(s)-T-3',(b20)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 20 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b21)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 21 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b22)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 22 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b23)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-(s)-mN20-(s)-mN21-3’,(b 23 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -(s)-mN 20 -(s)-mN 21 -3',(b24)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 24 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(b25)5’-mN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 25 )5'-mN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(b26)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-mN8-mN9-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’,(b 26 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -mN 8 -mN 9 -mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3',(b27)5’-EVPmN1-(s)-N2f-(s)-mN3-mN4-mN5-N6f-mN7-N8f-N9f-mN10-mN11-mN12-mN13-N14f-mN15-N16f-mN17-mN18-mN19-mN20-mN21-(s)-mN22-(s)-mN23-3’;(b 27 )5'-EVPmN 1 -(s)-N 2 f-(s)-mN 3 -mN 4 -mN 5 -N 6 f-mN 7 -N 8 fN 9 f-mN 10 -mN 11 - mN 12 -mN 13 -N 14 f-mN 15 -N 16 f-mN 17 -mN 18 -mN 19 -mN 20 -mN 21 -(s)-mN 22 -(s)-mN 23 -3';其中,N1-N23彼此独立地选自碱基为A、U、C或G的核糖核苷酸,wherein N 1 -N 23 are independently selected from ribonucleotides whose bases are A, U, C or G,大写字母T表示碱基为胸腺嘧啶的脱氧核糖核苷酸,The capital letter T represents a deoxyribonucleotide with thymine as its base.小写字母m表示该字母m右侧相邻的一个核糖核苷酸为2’-O-CH3修饰的核糖核苷酸,The lowercase letter m indicates that the ribonucleotide adjacent to the right of the letter m is a 2'-O-CH 3 modified ribonucleotide.小写字母f表示该字母f左侧相邻的一个核糖核苷酸为2’-F修饰的核糖核苷酸,The lowercase letter f indicates that the ribonucleotide adjacent to the left side of the letter f is a 2'-F modified ribonucleotide.P1表示该字母右侧相邻的一个核苷酸为5’-磷酸核苷酸,P1 means that the nucleotide adjacent to the right of the letter is a 5'-phosphate nucleotide.EVP表示该字母组合右侧相邻的一个核苷酸为5’-反式乙烯基膦酸酯核苷酸,EVP means that the nucleotide adjacent to the right side of the letter combination is a 5'-trans vinylphosphonate nucleotide.-(s)-表示前后相邻的两个核苷酸以硫代磷酸二酯键连接,-(s)- indicates that the two adjacent nucleotides are connected by a phosphorothioate diester bond.[GNA]表示其右侧相邻的一个核糖核苷酸为存在GNA修饰的核糖核苷酸。[GNA] indicates that the adjacent ribonucleotide on the right is a ribonucleotide with GNA modification.
- 根据权利要求15-25任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物为siRNA修饰物。The double-stranded RNA modified substance according to any one of claims 15 to 25, wherein the double-stranded RNA modified substance is a siRNA modified substance.
- 根据权利要求15-26任一项所述的双链核糖核酸修饰物,其中,所述双链核糖核酸修饰物为用于抑制MARC1基因表达的siRNA修饰物。The double-stranded RNA modified substance according to any one of claims 15 to 26, wherein the double-stranded RNA modified substance is a siRNA modified substance for inhibiting the expression of the MARC1 gene.
- 根据权利要求15-27任一项所述的双链核糖核酸修饰物,其中,所述正义链与所述反义链选自如下组合:The double-stranded RNA modification according to any one of claims 15 to 27, wherein the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表2所示的任意一种siRNA修饰物的正义链,所述反义链包含对应siRNA修饰物的反义链;The sense strand comprises the sense strand of any one of the siRNA modifications shown in Table 2 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA modification;优选地,所述正义链与所述反义链选自如下组合:Preferably, the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表2所示的siRNA 356-siRNA 363、siRNA 366-siRNA 373和siRNA 433-siRNA 440中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs siRNA 356-siRNA 363, siRNA 366-siRNA 373 and siRNA 433-siRNA 440 shown in Table 2 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
- 一种双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物包括如权利要求1-14任一项所述的双链核糖核酸,或如权利要求15-28任一项所述的双链核糖核酸修饰物;以及,缀合连接于所述双链核糖核酸或所述双链核糖核酸修饰物的缀合基团。A double-stranded RNA conjugate, wherein the double-stranded RNA conjugate comprises the double-stranded RNA as described in any one of claims 1-14, or the double-stranded RNA modification as described in any one of claims 15-28; and a conjugated group conjugated to the double-stranded RNA or the double-stranded RNA modification.
- 根据权利要求29所述的双链核糖核酸缀合物,其中,所述缀合基团具有如下任一所示的结构:
The double-stranded RNA conjugate according to claim 29, wherein the conjugated group has a structure as shown in any of the following:
- 根据权利要求29或30所述的双链核糖核酸缀合物,其中,所述缀合基团连接于正义链的3’末端。The double-stranded ribonucleic acid conjugate according to claim 29 or 30, wherein the conjugated group is connected to the 3' end of the sense strand.
- 根据权利要求31所述的双链核糖核酸缀合物,其中,所述缀合基团通过磷酸二酯键与正义链的3’末端缀合连接;The double-stranded RNA conjugate according to claim 31, wherein the conjugated group is conjugated to the 3' end of the sense strand via a phosphodiester bond;优选地,所述双链核糖核酸缀合物的正义链与反义链互补形成所述双链核糖核酸缀合物的双链区,且所述正义链的3’末端形成平末端,所述反义链的3’末端具有1-2个延伸出所述双链区的突出的核苷酸;Preferably, the sense strand and the antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, and the 3' end of the antisense strand has 1-2 protruding nucleotides extending out of the double-stranded region;或者,or,所述双链核糖核酸缀合物的正义链与反义链互补形成所述双链核糖核酸缀合物的双链区,且所述正义链的3’末端形成平末端,所述反义链的3’末端形成平末端。The sense strand and antisense strand of the double-stranded RNA conjugate are complementary to each other to form a double-stranded region of the double-stranded RNA conjugate, and the 3' end of the sense strand forms a blunt end, while the 3' end of the antisense strand forms a blunt end.
- 根据权利要求29-32任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物具有如下所示结构:
The double-stranded ribonucleic acid conjugate according to any one of claims 29 to 32, wherein the double-stranded ribonucleic acid conjugate has the following structure:
其中,双螺旋结构为双链核糖核酸或双链核糖核酸修饰物。The double helix structure is double-stranded RNA or a modified double-stranded RNA. - 根据权利要求29-33任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物为siRNA缀合物。The double-stranded ribonucleic acid conjugate according to any one of claims 29 to 33, wherein the double-stranded ribonucleic acid conjugate is a siRNA conjugate.
- 根据权利要求29-34任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物是用于抑制MARC1基因表达的siRNA缀合物。The double-stranded RNA conjugate according to any one of claims 29 to 34, wherein the double-stranded RNA conjugate is a siRNA conjugate for inhibiting the expression of the MARC1 gene.
- 根据权利要求29-35任一项所述的双链核糖核酸缀合物,其中,所述双链核糖核酸缀合物由本文表1所示的任意一种siRNA与缀合基团连接形成,或者,所述双链核糖核 酸缀合物由本文表1-1所示的任意一种siRNA与缀合基团连接形成,或者,所述双链核糖核酸缀合物由本文表2所示的任意一种siRNA修饰物与缀合基团连接形成;The double-stranded ribonucleic acid conjugate according to any one of claims 29 to 35, wherein the double-stranded ribonucleic acid conjugate is formed by connecting any one of the siRNAs shown in Table 1 herein to a conjugation group, or the double-stranded ribonucleic acid conjugate is The acid conjugate is formed by connecting any one of the siRNAs shown in Table 1-1 herein to a conjugation group, or the double-stranded RNA conjugate is formed by connecting any one of the siRNA modifications shown in Table 2 herein to a conjugation group;优选地,所述双链核糖核酸缀合物中,其中,所述正义链与所述反义链选自如下组合:Preferably, in the double-stranded RNA conjugate, the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表3所示的任意一种siRNA缀合物的正义链,所述反义链包含对应siRNA缀合物的反义链;The sense strand comprises the sense strand of any one of the siRNA conjugates shown in Table 3 herein, and the antisense strand comprises the antisense strand of the corresponding siRNA conjugate;更优选地,所述正义链与所述反义链选自如下组合:More preferably, the sense strand and the antisense strand are selected from the following combinations:所述正义链包含本文表3所示的siRNA 451-siRNA 456、siRNA 462-siRNA 467和siRNA 516-siRNA 521中任意一种siRNA的正义链,所述反义链包含对应siRNA的反义链。The sense chain comprises the sense chain of any one of the siRNAs siRNA 451-siRNA 456, siRNA 462-siRNA 467 and siRNA 516-siRNA 521 shown in Table 3 of the present invention, and the antisense chain comprises the antisense chain of the corresponding siRNA.
- 权利要求1-14任一项所述的双链核糖核酸、权利要求15-28任一项所述的双链核糖核酸修饰物或权利要求29-36任一项所述的双链核糖核酸缀合物的前药。A prodrug of the double-stranded ribonucleic acid according to any one of claims 1 to 14, the double-stranded ribonucleic acid modification according to any one of claims 15 to 28, or the double-stranded ribonucleic acid conjugate according to any one of claims 29 to 36.
- 一种药物组合物,其中,所述药物组合物包括如下至少一项:如权利要求1-14任一项所述的双链核糖核酸,如权利要求15-28任一项所述的双链核糖核酸修饰物,如权利要求29-36任一项所述的双链核糖核酸缀合物,如权利要求37所述的前药。A pharmaceutical composition, wherein the pharmaceutical composition comprises at least one of the following: a double-stranded ribonucleic acid as described in any one of claims 1 to 14, a double-stranded ribonucleic acid modification as described in any one of claims 15 to 28, a double-stranded ribonucleic acid conjugate as described in any one of claims 29 to 36, and a prodrug as described in claim 37.
- 根据权利要求38所述的药物组合物,其中,所述药物组合物还包括一种或多种药学上可接受的载体,以及任选地还包括一种或多种另外的治疗剂。The pharmaceutical composition according to claim 38, wherein the pharmaceutical composition further comprises one or more pharmaceutically acceptable carriers and optionally one or more additional therapeutic agents.
- 根据权利要求1-14任一项所述的双链核糖核酸,根据权利要求15-28任一项所述的双链核糖核酸修饰物,根据权利要求29-36任一项所述的双链核糖核酸缀合物,根据权利要求37所述的前药或根据权利要求38或39所述的药物组合物在如下至少一项中的用途:Use of the double-stranded RNA according to any one of claims 1 to 14, the double-stranded RNA modified substance according to any one of claims 15 to 28, the double-stranded RNA conjugate according to any one of claims 29 to 36, the prodrug according to claim 37 or the pharmaceutical composition according to claim 38 or 39 in at least one of the following:(1)在体内或体外抑制MARC1基因表达,或制备用于抑制MARC1基因表达的药物;(1) Inhibiting MARC1 gene expression in vivo or in vitro, or preparing a drug for inhibiting MARC1 gene expression;(2)用于预防或治疗与MARC1基因异常表达相关的疾病,或制备用于预防或治疗与MARC1基因异常表达相关的疾病的药物;(2) for preventing or treating diseases associated with abnormal expression of the MARC1 gene, or for preparing drugs for preventing or treating diseases associated with abnormal expression of the MARC1 gene;(3)用于治疗患有将受益于MARC1基因表达降低的疾病的受试者,或制备用于治疗患有将受益于MARC1基因表达降低的疾病的受试者的药物。(3) Use for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene, or for preparing a medicament for treating a subject suffering from a disease that would benefit from reduced expression of the MARC1 gene.
- 根据权利要求40所述的用途,其中,所述与MARC1基因异常表达相关的疾病选自如下疾病组成的组:The use according to claim 40, wherein the disease associated with abnormal expression of the MARC1 gene is selected from the group consisting of the following diseases:肥胖症、非酒精性脂肪性肝病、酒精相关的脂肪性肝病、非酒精性脂肪性肝炎、肝硬化、肝纤维化、肝酶水平升高(ALT、AST、ALP)、肝细胞癌、高胆固醇血症和相关的心血管疾病、胰岛素抵抗、葡萄糖耐量异常、高血糖症、II型糖尿病和代谢综合征。Obesity, non-alcoholic fatty liver disease, alcohol-related fatty liver disease, non-alcoholic steatohepatitis, cirrhosis, liver fibrosis, elevated liver enzyme levels (ALT, AST, ALP), hepatocellular carcinoma, hypercholesterolemia and related cardiovascular disease, insulin resistance, impaired glucose tolerance, hyperglycemia, type II diabetes, and metabolic syndrome.
- 一种用于在体内或体外抑制细胞内MARC1基因表达的方法,其中,所述方法包括将所述细胞与根据权利要求1-14任一项所述的双链核糖核酸,根据权利要求15-28任一项所述的双链核糖核酸修饰物,根据权利要求29-36任一项所述的双链核糖核酸缀合物,根据权利要求37所述的前药或根据权利要求38或39所述的药物组合物接触。A method for inhibiting MARC1 gene expression in cells in vivo or in vitro, wherein the method comprises contacting the cells with a double-stranded RNA according to any one of claims 1 to 14, a double-stranded RNA modification according to any one of claims 15 to 28, a double-stranded RNA conjugate according to any one of claims 29 to 36, a prodrug according to claim 37, or a pharmaceutical composition according to claim 38 or 39.
- 根据权利要求42所述的方法,其中,所述细胞为体内细胞或体外细胞。The method according to claim 42, wherein the cell is an in vivo cell or an in vitro cell.
- 根据权利要求42或43所述的方法,其中,所述细胞在受试者体内。The method of claim 42 or 43, wherein the cell is in a subject.
- 根据权利要求44所述的方法,其中,所述受试者为哺乳动物,优选为人。The method according to claim 44, wherein the subject is a mammal, preferably a human.
- 根据权利要求44或45所述的方法,其中,所述受试者具有如下至少一种特性:The method according to claim 44 or 45, wherein the subject has at least one of the following characteristics:体内MARC1基因异常表达,更具体地为MARC1基因异常高表达;Abnormal expression of MARC1 gene in vivo, more specifically abnormally high expression of MARC1 gene;患有与MARC1基因异常表达相关的疾病;Suffering from diseases associated with abnormal expression of the MARC1 gene;患有将受益于MARC1基因表达降低的疾病。Having a disease that would benefit from decreased expression of the MARC1 gene.
- 如权利要求1-14任一项所述的双链核糖核酸,如权利要求15-28任一项所述的双链核糖核酸修饰物,如权利要求29-36任一项所述的双链核糖核酸缀合物,如权利要求37所述的前药或如权利要求38或39所述的药物组合物,用于治疗。 The double-stranded RNA according to any one of claims 1 to 14, the double-stranded RNA modification according to any one of claims 15 to 28, the double-stranded RNA conjugate according to any one of claims 29 to 36, the prodrug according to claim 37 or the pharmaceutical composition according to claim 38 or 39, for use in treatment.
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