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WO2014013076A1 - Hexahydropyrrolothiazine compounds - Google Patents

Hexahydropyrrolothiazine compounds Download PDF

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Publication number
WO2014013076A1
WO2014013076A1 PCT/EP2013/065352 EP2013065352W WO2014013076A1 WO 2014013076 A1 WO2014013076 A1 WO 2014013076A1 EP 2013065352 W EP2013065352 W EP 2013065352W WO 2014013076 A1 WO2014013076 A1 WO 2014013076A1
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Prior art keywords
group
compound
fluoro
optionally substituted
pharmaceutically acceptable
Prior art date
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PCT/EP2013/065352
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French (fr)
Inventor
Adrian Hall
Christopher Neil Farthing
Andrew John Eatherton
Original Assignee
Eisai R&D Management Co., Ltd.
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Publication of WO2014013076A1 publication Critical patent/WO2014013076A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/02Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
    • C07D513/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • A61P25/28Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia

Definitions

  • the present invention relates to an isothiourea derivative and pharmaceutical use thereof. More particularly, the present invention relates to an isothiourea derivative which has an amyloid- ⁇ (hereinafter referred to as ⁇ ) protein production inhibitory effect or a beta-site amyloid- ⁇ precursor protein cleavage enzyme 1 (hereinafter referred to as BACEl or beta-secretase) inhibitory effect and which may be effective for treating a neurodegenerative disease caused by ⁇ protein, in particular, Alzheimer' s-type dementia (AD), Down's syndrome or the like, and to a pharmaceutical composition comprising the isothiourea derivative as an active ingredient.
  • amyloid- ⁇
  • BACEl or beta-secretase beta-secretase
  • Alzheimer's disease is characterized by degeneration and loss of neurons as well as formation of senile plaques and neurofibrillary tangles.
  • a symptom-improving agent typified by an acetylcholinesterase inhibitor, and a fundamental remedy to inhibit progression of the disease has not yet been developed. It is necessary to develop a method for controlling the causative pathology in order to create a fundamental remedy for Alzheimer's disease.
  • ⁇ -proteins as breakdown products of amyloid precursor proteins (hereinafter referred to as APP) are critical to the degeneration and loss of neurons and onset of symptoms of dementia.
  • ⁇ -proteins have, as main components, ⁇ 40 consisting of 40 amino acids and ⁇ 42 consisting of 42 amino acids wherein the two additional amino acids are present at the C-terminal.
  • the ⁇ 40 and ⁇ 42 proteins are known to be highly prone to aggregation and to be the main components of the senile plaques linked to AD (Tanzi & Bertram, Cell 2005, 120: 545-555; Haass & Selkoe, Nat Rev Mol Cell Biol 2007, 8: 101-112).
  • ⁇ 42 production providing further support that genetic mutations in APP which increase its processing by BACEl result in increased amyloid production and AD.
  • a K670N/M671L double mutant (Swedish mutation), which has previously been shown to be linked to early onset AD (Mullan et al Nat Genet. 1992 1(5), Aug, 345-347) produced even more pronounced increases in ⁇ production than the A693V mutant.
  • a compound that reduces production of ⁇ 40 and ⁇ 42 is predicted to be a disease progression inhibitor or prophylactic agent for Alzheimer' s- type dementia (AD).
  • AD Alzheimer' s- type dementia
  • AD Alzheimer's-type dementia
  • ⁇ 40 and ⁇ 42 amyloidogenic conditions
  • ⁇ deposition may be a causative factor in cognitive impairment associated with Down's syndrome.
  • diabetes Another common co-morbidity in Down's syndrome is diabetes, being seven times more likely in individuals with Down's syndrome than the general population, and this increased frequency may be attributed to a gene product of chromosome 21, the triplication of all or some of which is
  • BACE2 inhibitors may be useful for the treatment of diabetes (Esterhazy et al, Cell Metab., 2011, 14: 365-377). Accordingly, a dual BACE 1/2 inhibitor may provide an effective treatment for amyloid pathology and diabetes in the general or Down's syndrome populations.
  • Examples of other neurodegenerative diseases that might be treatable or preventable with a compound that reduces progression of ⁇ 40 and ⁇ 42 include cerebrovascular amyloid angiopathy (CAA), mild cognitive impairment (MCI), memory loss, presenile dementia, senile dementia, hereditary cerebral hemorrhage with amyloidosis, and other degenerative dementias such as dementias of mixed vascular and degenerative origin, dementia associated with supranuclear palsy, dementia associated with cortical basal degeneration, dementia associated with Parkinson's Disease (PD), and dementia associated with diffuse Lewy Body type of AD.
  • CAA cerebrovascular amyloid angiopathy
  • MCI mild cognitive impairment
  • MCI mild cognitive impairment
  • memory loss presenile dementia
  • senile dementia hereditary cerebral hemorrhage with amyloidosis
  • other degenerative dementias such as dementias of mixed vascular and degenerative origin, dementia associated with supranuclear palsy, dementia associated with cortical basal degeneration, dementia associated with
  • CJD Creutzfield- Jakob Disease
  • peripheral nerve injury peripheral neuropathy, progressive supra-nuclear palsy, stroke
  • amyotrophic lateral sclerosis ALS
  • autoimmune diseases inflammation, arterial thrombosis, anxiety disorders, psychotic disorders, epilepsy, seizures, convulsions, stress disorders, vascular amyloidosis, pain, Gerstmann-Straeussler-Scheinker syndrome, scrapie, encephalopathy
  • Whipple's Disease Kostmann Disease, glaucoma, hereditary cerebral hemorrhage with amyloidosis, cerebral hemorrhage with amyloidosis, vascular amyloidosis, brain inflammation, fragile X syndrome, stroke, Tourette's syndrome, inclusion body myositis, stress disorders, depression, bipolar disorder and obsessive compulsive disorder.
  • BACE1 inhibitors may also be useful in a therapeutic approach to accelerate
  • is produced by the cleavage of APP by beta-secretase (BACE1) and subsequently by gamma-secretase. For this reason, attempts have been made to create compounds which inhibit ⁇ production. Examples of compounds having an ⁇ or
  • BACE 1 inhibitory effect are described for example in WO2011009897,
  • WO2009097278 Several ⁇ inhibitors have been investigated in clinical studies as potential treatments for AD.
  • the compound MK-8931 has been reported to reduce CSF ⁇ 40, ⁇ 42 and ⁇ in AD patients (Forman et al, 11 th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy, 7th March 2013).
  • Other examples include LY2811376 (J. Neurosci 2011, Vol. 31(46): 16507-16516) and LY2886721 (May et al., 11 th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy, 7th March 2013).
  • BBB blood brain barrier
  • transporters Hitchcock and Pennington, J. Med. Chem. 2006, 29, 7559; Ueno, Curr. Med. Chem. 2007, 14, 1199; Gloor et al, Brain Res. Rev. 2001, 36, 258.
  • Several efflux transporters have been characterised which prevent compounds entering the brain.
  • Pgp P-glycoprotein
  • An object of the present invention is to provide compounds that have an ⁇ production inhibitory effect or a BACE1 inhibitory effect and which may be useful as prophylactic or therapeutic agents for a neurodegenerative disease caused by ⁇ and typified by Alzheimer-type dementia (AD) or Down's syndrome.
  • AD Alzheimer-type dementia
  • the invention provides a compound of formula (I):
  • Pv 1 is a 5- to 10- membered carbocyclic group or a 5- to 10- membered
  • heterocyclic group either of which is optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, a carbamoyl group which is optionally substituted with one or two Ci_ 6 alkyl groups, a sulfonylamino group which is optionally substituted with one or two Ci_ 6 alkyl groups, an aminosulfonyl group which is optionally substituted with one or two Ci_ 6 alkyl groups, an amino group which is optionally substituted with one or two Ci_ 6 alkyl groups which are each optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C 2 -6 alkenyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C 2 _ 6 alkynyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a Ci_ 6
  • R is a 5- to 6- membered heteroaryl group optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, an amino group which is optionally substituted with one or two Ci_6 alkyl groups, a Ci_ 6 alkoxy group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, and a Ci_ 6 alkyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a;
  • R 3 and R 4 each independently represent a hydrogen atom, a C3-6 cycloalkyl group or a Ci_ 6 alkyl group optionally substituted with 1 to 3 substituents selected from Substituent Group a;
  • each substituent selected from Substituent Group a is independently a halogen atom, a cyano group, a hydroxyl group, a Ci_ 6 alkoxy group or an oxo group;
  • R 5 is a hydrogen atom or a fluorine atom
  • R 6 , R 7 , R 8 and R 9 are independently a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a trifluoromethyl group.
  • the isothiourea derivative of formula (I) or pharmaceutically acceptable salt thereof according to the present invention may be a solvate thereof.
  • a solvate include a hydrate.
  • R is a 5- to 6- membered nitrogen- containing heteroaryl group optionally substituted with at least one substituent independently selected from a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_ 6 hydroxyalkyl group and a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group.
  • R is a 5- to 6- membered nitrogen- containing heteroaryl group substituted with at least one substituent independently selected from a halogen atom, a Ci- 6 haloalkyl group, a Ci- 6 alkyl group and a Ci_ 6 alkoxy group.
  • R is a group of formula (II),
  • R , R and R are independently a hydrogen atom, a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 haloalkoxy group, a Ci_ 6 hydroxyalkyl group or a C 1-6 alkyl group optionally substituted with a Ci- 6 alkoxy group.
  • R 1 is a phenyl group, a pyridinyl group or a thienyl group, any of which is optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, and an amino group which is optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group.
  • R 1 is a phenyl group or thienyl group, either of which is optionally substituted with at least one substituent independently selected from a halogen atom, a Ci_ 6 haloalkyl group or a Ci_ 6 haloalkoxy group.
  • R 1 is a phenyl group which is optionally substituted with at least one substituent independently selected from a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, and an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_ 6 haloalkyl group.
  • R 1 is a group of formula (III),
  • R a is a hydrogen atom or a fluorine atom; and R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group.
  • R 1 is a group of formula (III) wherein R 10a is a fluorine atom and R 10b is a hydrogen atom.
  • R 1 is a group of formula (III), wherein R 10a is a hydrogen atom and R 10b is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group.
  • R 10a is a hydrogen atom and R 10b is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, or an amino group which is optionally substituted with one or two substituent
  • R is a pyridinyl group which is optionally substituted with at least one subsitituent independently selected from a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group and a Ci- 6 alkyl group.
  • R 1 is a group of formula (IV),
  • R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group or a Ci- 6 alkyl group.
  • R 1 is a cyclohexyl group or cyclopentyl group, either of which is optionally substituted with at least one substituent
  • Ci_ 6 haloalkyl group independently selected from a halogen atom, a Ci_ 6 haloalkyl group or a Ci_ 6 haloalkoxy group.
  • R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are each independently a hydrogen atom.
  • the present invention provides a compound of formula (I), or a pharmaceutically acceptable salt thereof, wherein R 1 is a phenyl group or thienyl group, either of which is optionally substituted with at least one substituent
  • R is a 5- to 6-membered nitrogen-containing heteroaryl group substituted with at least one substituent independently selected from a halogen atom, a Ci-6 haloalkyl group, a Ci- 6 alkyl group and a Ci_ 6 alkoxy group; and R 3 , R 4 , R 5 , R 6 , R 7 ,
  • R and R are each independently a hydrogen atom.
  • the present invention provides a compound of formula (IA)
  • R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are defined as for formula (I);
  • n is 1 or 2; and each R 10 is independently a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_ 6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group.
  • the invention provides a compound of formula (IA), or a pharmaceutically acceptable salt thereof, wherein each R 10 is independently a fluorine atom.
  • the present invention provides a compound of formula (IB)
  • R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are defined as for Formula (I);
  • n is 1 or 2; each R 10 is a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group; and
  • R , R ⁇ and R 1J are independently selected from a hydrogen atom, a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 haloalkoxy group, a Ci_ 6 hydroxyalkyl group and a Ci- 6 alkyl group optionally substituted with a Ci- 6 alkoxy group.
  • R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are each independently a hydrogen atom.
  • the present invention provides a compound of formula (IB), or a pharmaceutically acceptable salt thereof, wherein each R 10 is fluorine; and R 11 , R 12
  • R are independently selected from a hydrogen atom, a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci_ 6 hydroxyalkyl group and a Ci- 6 alkyl group optionally substituted with a Ci- 6 alkoxy group.
  • the present invention provides a compound of formula (IB), or a pharmaceutically acceptable salt thereof, wherein
  • R 11 is a Ci_6 alkoxy group
  • R is a fluorine atom or a Ci- 6 haloalkyl group
  • R is a hydrogen atom, a Ci_ 6 alkyl group, a Ci_ 6 haloalkyl group or a Ci_ 6 hydroxyalkyl group.
  • the present invention provides a compound of formula (IBa),
  • R is a hydrogen atom, a fluorine atom or a cyano group
  • R 11 is a methoxy group
  • R 12 is a hydrogen atom or a fluorine atom
  • R 13 is a hydrogen atom, a methyl group, a monof uoromethyl group, a difluoromethyl group or a hydroxymethyl group.
  • the present invention provides a compound of formula (IC)
  • R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are defined as for formula (I);
  • X 1 and X" are independently selected from a bond, methylene (-CH 2 -) and ethylene (-CH 2 CH 2 )-;
  • A is methylene (-CH 2 -) or an oxygen atom.
  • the present invention provides a compound of formula (ID)
  • R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are defined as for Formula (I);
  • A is methylene (-CH 2 -) or an oxygen atom
  • X 1 and X" are independently selected from a bond, methylene (-CH 2 -) and ethylene (-CH 2 CH 2 )-;
  • R II , R 1 ⁇ 2 and R 1 1 3 J are independently selected from a hydrogen atom, a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 haloalkoxy group, a Ci_ 6 hydroxyalkyl group and a Ci- 6 alkyl group optionally substituted with a Ci- 6 alkoxy group.
  • the present invention provides a compound of formula (ID) wherein R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 are each independently a hydrogen atom.
  • the present invention provides a compound of formula (ID), or a pharmaceutically acceptable salt thereof, wherein
  • R 11 is a Ci_6 alkoxy group
  • R is a fluorine atom or a Ci- 6 haloalkyl group
  • R is a hydrogen atom, a Ci_ 6 alkyl group, a Ci_ 6 haloalkyl group or a Ci_ 6 hydroxyalkyl group.
  • the present invention provides a compound of formula (IE)
  • R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are defined as for formula (I);
  • n is 0 or 1;
  • R 10 is a fluorine atom, a chlorine atom, a cyano group, a Ci_ 6 haloalkyl group or a Ci- 6 alkyl group.;
  • R 11 , R 1 l 2 z and R 1 1 3 J are independently selected from a hydrogen atom, a halogen atom, a Ci- 6 haloalkyl group, a Ci_ 6 alkoxy group, a Ci- 6 haloalkoxy group, a Ci_ 6 hydroxyalkyl group and a Ci- 6 alkyl group optionally substituted with a Ci- 6 alkoxy group.
  • the present invention provides a compound of formula (IE) wherein R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 are each independently a hydrogen atom.
  • the present invention provides a compound of formula (IEa), or a pharmaceutically acceptable salt thereof,
  • R 10 is a hydrogen atom, a fluorine atom or a trifluoromethyl group
  • R 11 is a methoxy group
  • R is a hydrogen atom or a fluorine atom
  • R is a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a hydroxymethyl group.
  • the compounds of formula (I) comprise chiral centers located at the 7a and 4a positions as depicted below.
  • the compounds of formula (I) may be present either in a stereochemically pure form or as a mixture with one or more of the other possible stereoisomers, for example in a racemic mixture or diastereomeric mixture.
  • the present invention provides a compound of formula (I) selected from:-
  • the present invention provides a compound of formula (I) selected from:-
  • the present invention provides the compound
  • the present invention provides the compound
  • the present invention provides the compound
  • Ci_ 6 alkyl refers to an alkyl group having 1 to 6 carbon atoms.
  • examples of the group include linear and branched alkyl groups such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, t-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, 1-methylpropyl, 1 ,2-dimethylpropyl, 1-ethylpropyl, l-methyl-2- ethylpropyl, l-ethyl-2-methylpropyl, 1,1,2-trimethylpropyl, 1 -methylbutyl, 2- methylbutyl, 1,1-dimethylbutyl, 2,2-dimethylbutyl, 2-ethylbutyl, 1,3-dimethylbutyl, 2- methylpentyl and 3-methylpentyl.
  • C2- 6 alkenyl refers to an alkenyl group having 2 to 6 carbon atoms.
  • Examples of the group include linear and branched alkenyl groups such as vinyl, allyl, 1-propenyl, isopropenyl, 1-buten-l-yl, l-buten-2-yl, l-buten-3-yl, 2- buten-l-yl and 2-buten-2-yl.
  • C2- 6 alkynyl refers to an alkynyl group having 2 to 6 carbon atoms.
  • Examples of the group include linear and branched alkynyl groups such as ethynyl, 1-propynyl, 2-propynyl, butynyl, pentynyl and hexynyl.
  • halogen refers to fluorine, chlorine, bromine or iodine.
  • Ci_ 6 haloalkyl' denotes a Ci_ 6 alkyl group substituted with one to three halogen atoms wherein each halogen is independently selected from fluorine, chlorine, bromine and iodine.
  • Ci_ 6 haloalkyl groups include CF 3 (trif uoromethyl), CHF 2 (difluoromethyl), CH 2 F (monofluoromethyl), CH 2 CF ,
  • Ci_ 6 hydroxyalkyl denotes a Ci_ 6 alkyl group substituted with one to three hydroxyl groups.
  • Examples of Ci_ 6 hydroxyalkyl groups include -CH 2 OH (hydroxymethyl).
  • Examples of a "Ci_ 6 alkoxy” group include methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy, t-butoxy, n-pentoxy, isopentoxy, sec- pentoxy, t-pentoxy, n-hexyloxy, isohexyloxy, 1,2-dimethylpropoxy, 2-ethylpropoxy, 1- methyl-2-ethylpropoxy, l-ethyl-2-methylpropoxy, 1,1,2-trimethylpropoxy, 1,1- dimethylbutoxy, 2,2-dimethylbutoxy, 2-ethylbutoxy, 1,3-dimethylbutoxy, 2- methylpentoxy, 3-methylpentoxy and hexyloxy.
  • Examples of a "Ci_ 6 haloalkoxy” group include -OCHF 2 (difluoromethoxy).
  • Examples of a "Ci_ 6 alkylthio" group include methylthio, ethylthio, n-propylthio, isopropylthio, n-butylthio, isobutylthio, t-butylthio, n-pentylthio, isopentylthio, neopentylthio, n-hexylthio and 1-methylpropylthio.
  • Examples of an "amino"group optionally substituted with one or two substituents independently selected from a Ci_ 6 alkyl group and a Ci_ 6 haloalkyl group include amino (-NH 2 ), methylamino (-NHMe), ethylamino (-NHEt), dimethylamino (-NMe 2 ), diethylamino (-NEt 2 ) and bis(2-fluoroethyl)amino (-NHCH(CH 2 F) 2 .
  • Examples of a "carbamoyl"group which is optionally substituted with one or two Ci_6 alkyl groups include -CONH 2 , -CONMe 2 and -CONEt 2 .
  • Examples of a "sulfonylamino" group which is optionally substituted with one or two Ci_6 alkyl groups include methylsulfonylmethylamino (-N(Me)S0 2 Me).
  • Examples of an "aminosulfonyl"group which is optionally substituted with one or two Ci_6 alkyl groups include -S0 2 NH 2 , -S0 2 NMe 2 and -S0 2 NEt 2 .
  • the term "carbocyclic” denotes ring systems having 3 to 10 ring carbon atoms, including aryl rings, non-aromatic rings such as cycloalkyl rings and partially saturated rings, monocyclic rings and fused bicyclic rings including condensed, bridged and spirocyclic rings.
  • cycloalkyl denotes saturated carbocyclic rings having 3 to 10 carbon atoms.
  • aryl denotes aromatic carbocyclic rings having 6 to 10 carbon atoms, including monocyclic aromatic rings and fused bicyclic rings wherein both rings are aromatic.
  • the term carbocyclic includes fused bicyclic rings wherein one ring is non-aromatic and the other is aromatic, e.g. indanyl. Examples of "cycloalkyl” rings include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl,
  • cycloheptyl and cyclooctyl examples include phenyl and naphthyl.
  • heterocyclic denotes ring systems having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur, including heteroaryl rings, non-aromatic rings such as heterocycloalkyl rings and partially saturated rings, monocyclic rings and fused bicyclic rings including condensed, bridged and spirocyclic rings.
  • heterocyclic also includes fused bicyclic rings containing at least one ring heteroatom wherein one ring is non-aromatic and the other is aromatic.
  • heteroaryl denotes aromatic rings having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur, including monocyclic aromatic rings and fused bicyclic rings wherein both rings are aromatic.
  • 'heterocycloalkyl' denotes saturated rings having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur.
  • Examples of 5 to 6-membered "heteroaryl” groups include furanyl, thienyl, pyrazolyl, imidazolyl, triazolyl, oxazolyl, isooxazolyl, thiazolyl, isothiazolyl, oxadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl and triazinyl.
  • a group may be substituted or unsubstituted.
  • the group may for example be unsubstituted or substituted with 1, 2 or 3 substituents.
  • crystal polymorphs of the compound of formula (I) may be present, the compound is similarly not limited thereto and may be present as a single crystal form or a mixture of single crystal forms.
  • the compound may be an anhydride or a hydrate. Any of these forms are included in the scope of the present invention.
  • the present invention also includes isotopically-labelled compounds, which are identical to the compounds of formula (I), except that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature.
  • isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, fluorine, phosphorous, chlorine, technetium and iodine, such as 2 H, 3 H, n C, 14 C, 13 N, 15 0, 18 F, 32 P, 99m Tc, 123 I and 131 I.
  • Isotopically- labelled compounds of the present invention for example those into which radioactive isotopes such as 3 H and/or 14 C are incorporated, may be useful in drug and/or substrate tissue distribution assays due to their ease of preparation and detectability.
  • U C, 15 0 and 18 F isotopes may be useful in PET (positron emission tomography), and 99m Tc, 123 I
  • I isotopes may be useful in SPECT (single photon emission computerized tomography), all useful in brain imaging. Substitution with heavier isotopes such as H may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements and, hence, may be considered useful in some circumstances.
  • Isotopically labelled compounds of formula (I) of this invention can generally be prepared by carrying out the procedures disclosed in the Schemes and/or in the Examples below, by substituting a readily available isotopically labelled reagent for a non-isotopically labelled reagent.
  • the isothiourea derivative of the formula (I) according to the present invention may be a pharmaceutically acceptable salt.
  • Pharmaceutically acceptable salts include those described by Berge, Bighley and Monkhouse, J. Pharm. Sci., 1977, 66, 1-19.
  • the pharmaceutically acceptable salt include inorganic acid salts (such as sulfates, nitrates, perchlorates, phosphates, carbonates, bicarbonates, hydro fluorides, hydrochlorides, hydrobromides and hydroiodides), organic carboxylates (such as acetates, oxalates, maleates, tartrates, fumarates, citrates, malonates, lactates and hippurates), organic sulfonates (such as methanesulfonates,
  • trifluoromethanesulfonates ethanesulfonates, benzenesulfonates, toluenesulfonates and camphorsulfonates
  • amino acid salts such as aspartates and glutamates
  • quaternary amine salts alkali metal salts (such as sodium salts and potassium salts) and alkali earth metal salts (such as magnesium salts and calcium salts).
  • the compound of formula (I) according to the present invention may be converted to a pharmaceutically acceptable salt by a conventional method where necessary.
  • the salt may be prepared by a method in which methods typically used in the field of organic synthetic chemistry and the like are appropriately combined.
  • Specific examples of the method include neutralization titration of a free solution of the compound of the present invention with an acid solution.
  • the compound of formula (I) or a pharmaceutically acceptable salt thereof according to the present invention may be converted to a solvate by subjecting the compound to a solvate forming reaction known per se where necessary.
  • the present invention further provides a compound of formula (I) or a pharmaceutically acceptable salt thereof for use in therapy.
  • the isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention has an ⁇ production inhibitory effect and may be useful as a prophylactic or therapeutic agent for a neurodegenerative disease caused by ⁇ and typified by Alzheimer-type dementia.
  • the compounds of the invention may reduce both ⁇ 40 and ⁇ 42.
  • the compounds of the present invention may have a BACE 1 and a BACE 2 inhibitory effect.
  • the present invention provides a compound of formula
  • the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for inhibiting beta-site amyloid- ⁇ precursor protein cleaving enzyme 1 (BACE 1).
  • BACE beta-site amyloid- ⁇ precursor protein cleaving enzyme 1
  • the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating or preventing a neurodegenerative disease.
  • the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating or preventing Alzheimer-type dementia (AD).
  • the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating Down's syndrome.
  • the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of a neurodegenerative disease.
  • the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of Alzheimer-type dementia (AD).
  • AD Alzheimer-type dementia
  • the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment of Down's syndrome.
  • the invention provides a method of inhibiting production of amyloid- ⁇ protein involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
  • Effective amount means an amount sufficient to cause a benefit to the subject or at least to cause a change in the subject's condition.
  • the invention provides a method of treating or preventing Alzheimer-type dementia (AD) involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
  • AD Alzheimer-type dementia
  • the invention provides a method of treating Down's syndrome involving administering to a human subject in need thereof a therapeutically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
  • the present invention further provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating type 2 diabetes.
  • the present invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of type 2 diabetes.
  • the present invention further provides a method of treating or preventing type 2 diabetes involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
  • a further aspect of the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, as active ingredient in association with a pharmaceutically acceptable carrier.
  • the composition may be in any suitable form, depending on the intended method of administration. It may for example be in the form of a tablet, capsule or liquid for oral administration, or of a solution or suspension for
  • the isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention may be formulated by a conventional method.
  • the dosage form include tablets, coated tablets such as film tablets and sugar-coated tablets, fine granules, granules, powders, capsules, syrups, troches, inhalants, suppositories, injections, ointments, eye drops, nasal drops, ear drops, cataplasms and lotions.
  • solid preparations such as tablets, capsules, granules and powders may contain generally 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the fused isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention as an active ingredient.
  • the active ingredient is formulated by blending ingredients generally used as materials for a pharmaceutical preparation and adding an excipient, a disintegrant, a binder, a lubricant, a colorant and a corrective typically used, and adding a stabilizer, an emulsifier, an absorbefacient, a surfactant, a pH adjuster, a preservative and an antioxidant where necessary, for example, using a conventional method.
  • ingredients include animal and vegetable oils such as soybean oil, beef tallow and synthetic glyceride; hydrocarbons such as liquid paraffin, squalane and solid paraffin; ester oils such as octyldodecyl myristate and isopropyl myristate; higher alcohols such as cetostearyl alcohol and behenyl alcohol; a silicone resin; silicone oil; surfactants such as polyoxyethylene fatty acid ester, sorbitan fatty acid ester, glycerol fatty acid ester, polyoxyethylene sorbitan fatty acid ester, polyoxyethylene hydrogenated castor oil and a polyoxyethylene-polyoxypropylene block copolymer; water-soluble polymers such as hydroxyethylcellulose, polyacrylic acid, a carboxyvinyl polymer, polyethylene glycol, polyvinylpyrrolidone and methylcellulose; lower alcohols such as ethanol and isopropanol; polyhydric alcohols such as glycerol, propylene
  • excipient used examples include lactose, corn starch, saccharose, glucose, mannitol, sorbitol, crystalline cellulose and silicon dioxide.
  • binder used examples include polyvinyl alcohol, polyvinyl ether, methylcellulose, ethylcellulose, gum arabic, tragacanth, gelatin, shellac, hydroxypropylmethylcellulose,
  • hydroxypropylcellulose polyvinylpyrrolidone, a polypropylene glycol-polyoxyethylene block copolymer and meglumine.
  • disintegrant used include starch, agar, gelatin powder, crystalline cellulose, calcium carbonate, sodium bicarbonate, calcium citrate, dextrin, pectin and carboxymethylcellulose calcium.
  • lubricant used include magnesium stearate, talc, polyethylene glycol, silica and hydrogenated vegetable oil.
  • the colorant used include those permitted to be added to pharmaceuticals.
  • Examples of the corrective used include cocoa powder, menthol, empasm, mentha oil, borneol and cinnamon powder. Obviously, the ingredients are not limited to the above additive ingredients.
  • an oral preparation is prepared by adding the fused isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention as an active ingredient, an excipient and, where necessary, a binder, a disintegrant, a lubricant, a colorant, a corrective and the like, and then forming the mixture into powder, fine granules, granules, tablets, coated tablets, capsules or the like by a conventional method.
  • tablets or granules may be appropriately coated, for example, sugar coated, where necessary.
  • a syrup or an injection preparation is prepared by adding a pH adjuster, a solubilizer, an isotonizing agent and the like, and a solubilizing agent, a stabilizer and the like where necessary by a conventional method.
  • the injection may be a previously prepared solution, or may be powder itself or powder containing a suitable additive, which is dissolved before use.
  • the injection may contain usually 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the active ingredient.
  • a liquid preparation for oral administration such as a suspension or a syrup may contain usually 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the active ingredient.
  • an external preparation may be prepared by any conventional method without specific limitations.
  • a base material any of various materials usually used for a pharmaceutical, a quasi drug, a cosmetic or the like can be used.
  • the base material examples include materials such as animal and vegetable oils, mineral oils, ester oils, waxes, higher alcohols, fatty acids, silicone oils, surfactants, phospholipids, alcohols, polyhydric alcohols, water-soluble polymers, clay minerals and purified water.
  • a pH adjuster, an antioxidant, a chelator, a preservative and fungicide, a colorant, a flavor or the like can be added where necessary.
  • ingredients such as an ingredient having a differentiation inducing effect, a blood flow enhancer, a bactericide, an antiphlogistic, a cell activator, vitamin, amino acid, a humectant and a keratolytic agent can be blended where necessary.
  • the dose of the isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention may vary according to the degree of symptoms, age, sex, body weight, mode of administration, type of salt and specific type of disease, for example.
  • the active ingredient is orally administered to an adult at about 30 ⁇ g to 10 g, preferably 100 ⁇ g to 5 g, and more preferably 100 ⁇ g to 1 g per day, or is administered to an adult by injection at about 30 ⁇ g to 1 g, preferably 100 ⁇ g to 500 mg, and more preferably 100 ⁇ g to 300 mg per day, in one or several doses, respectively.
  • the present invention provides a pharmaceutical product comprising, in combination, a first active ingredient which is a compound of formula (I) or a pharmaceutically acceptable salt thereof and at least one further active ingredient useful in treating a neurodegenerative disease.
  • the neurodegenerative disease is Alzheimer-type dementia (AD).
  • Suitable examples of such further active ingredients may be symptomatic agents, for example those known to modify cholinergic transmission such as Ml and M3 muscarinic receptor agonists or allosteric modulators, M2 muscarinic antagonists, M4 agonists or positive allosteric modulators (PAMs), acetylcholinesterase inhibitors (such as tetrahydroaminoacridine, donepezil hydrochloride and rivastigmine), nicotinic receptor agonists or allosteric modulators (such as a7 agonists or allosteric modulators or ⁇ 4 ⁇ 2 agonists or allosteric modulators), PPAR agonists (such as PPARy agonists), 5-HT 4 receptor agonists or partial agonists, histamine H3 antagonists, 5-HT 6 receptor antagonists or 5HTIA receptor ligands and NMD A receptor antagonists or modulators (such as memantine), 5- HT 2 A antagonists, 5-HT 7
  • phosphorylation/kinase inhibitors tau dephosphorylation / phosphatase activators, mitogen-activated protein kinase kinase 4 (MKK4/MEK4/MAP2K4) inhibitors, c-Jun
  • JNK N-terminal kinase
  • casein kinase inhibitors MK2 (mitogen activated protein kinase-activated protein kinase 2) inhibitors, MARK (microtubule affinity regulating kinase) inhibitors, CDK5 (cyclin dependent kinase 5) inhibitors, GSK-3 (glycogen synthase kinase-3) inhibitors and tau-tubulin kinase-1 (TTBK1) inhibitors.
  • Such other therapeutic agents may be calcium channel blockers, HMG-CoA (3-hydroxy-3-methyl-glutaryl-CoA) reductase inhibitors (statins) and lipid lowering agents, NGF (nerve growth factor) mimics, antioxidants, GPR3 ligands, plasmin activators, neprilysin (NEP) activators, IDE (insulin degrading enzyme) activators, melatonin MT1 and/or MT2 agonists, TLX/NR2E1 (tailless X receptor) ligands, GluRl ligands, RAGE (receptor for advanced glycation end-products) antagonists, EGFR (epidermal growth factor receptor) inhibitors, FPRL-1 (formyl peptide-like receptor- 1) ligands, GAB A antagonists, and MICAL (molecule interacting with casL) inhibitors, e.g.
  • HMG-CoA 3-hydroxy-3-methyl-glutaryl-CoA reduct
  • oxoreductase inhibitors CB1 antagonists/inverse agonists, non-steroidal anti-inflammatory drugs (NSAIDs), anti-inflammatory agents (for example agents that could be used to treat neuroinflammation either by enhancing or reducing neuroinflammation), amyloid precursor protein (APP) ligands, anti-amyloid vaccines and / or antibodies, agents that promote or enhance amyloid efflux and / or clearance, histone deacetylase (HDAC) inhbitors, EP2 antagonists, 11 -beta HSD1 (hydroxysteroid dehydrogenase) inhibitors, liver X receptor (LXR) agonists or PAMs, lipoprotein receptor-related protein (LRP) mimics and / or ligands and/or enhancers and/or inhibitors, butyryl cholinesterase inhibitors, kynurinic acid antagonists and / or inhibitors of kynurenine aminotransferease (KAT), orphanin FQ / nociceptin (
  • the present invention provides a pharmaceutical product comprising, in combination, a first active ingredient which is a compound of formula (I) or a pharmaceutically acceptable salt thereof and at least one further active ingredient selected from:-
  • cholinesterase inhibitors e.g. donepezil, galantamine, rivastigamine
  • NMDA receptor antagonists e.g. memantine and pharmaceutically acceptable salts thereof, and any other compounds which elicit their effects by a similar mechanism of action
  • 5-HT 6 antagonists e.g. SB-742457 and pharmaceutically acceptable salts thereof
  • HMGCoA reductase inhibitors e.g. lovastatin, rosuvastatin, atorvastatin,
  • simvastatin simvastatin, fluvastatin, pitavastatin, pravastatin and pharmaceutically
  • the pharmaceutical product may, for example be a pharmaceutical composition comprising the first and further active ingredients in admixture.
  • the pharmaceutical product may for example comprise the first and further active ingredients in separate pharmaceutical preparations suitable for simultaneous, sequential or separate administration to a patient in need thereof.
  • compositions comprising a combination as defined above together with a pharmaceutically acceptable carrier or excipient comprise a further aspect of the invention.
  • each compound may differ from that when the compound is used alone. Appropriate doses will be readily appreciated by those skilled in the art.
  • an additional aspect of the invention provides a method of preparing a pharmaceutical composition, involving admixing at least one compound of formula (I) as defined above, or a pharmaceutically acceptable salt therof, with one or more pharmaceutically acceptable adjuvants, diluents or carriers and/or with one or more other therapeutically or prophylactically active agents.
  • the choice of solvent for a particular reaction is not particularly limited in so far as it will not inhibit the reaction, is compatible with the reactants and will allow the starting material to be dissolved to a certain extent. Further, reaction temperatures and reaction time may be varied according to the starting material, the reagent used and the like. As will be understood by those skilled in the art, when preparing certain compounds of formula (I) it may be appropriate to modify the following Preparation Methods by alternating the sequence of reaction steps and/or incorporating additional steps to vary substituent groups on intermediate compounds. Moreover, it will also be recognised that compounds of formula (I) prepared according to the General Preparation Methods may subsequently be converted to other compounds of formula (I) using known chemistry.
  • Diazabicycloundec-7-ene DBU; dichloromethane (DCM); 2,4,-dimethoxybenzyl (DMPM); ⁇ , ⁇ -Dimethylacetamide (DMA); ⁇ , ⁇ -Dimethylformamide (DMF); N, N- diisopropylethylamine (DIPEA); 4-methoxybenzyl (MPM); N-Methyl-2-pyrrolidone (NMP); mesyl (Ms); tetrahydrofuran (THF); triethylamine (TEA); trifluoroacetic acid (TFA); triflyl (Tf); Teoc (2-trimethylsilylethyl carbamate); tosyl (Ts).
  • DBU dichloromethane
  • DMPM 2,4,-dimethoxybenzyl
  • DMA ⁇ , ⁇ -Dimethylacetamide
  • DMF ⁇ , ⁇ -Dimethylformamide
  • DIPEA N- diisopropy
  • Suitable conditions for the preparation of lb from la include addition of an organometallic reagent (R M) to la in a suitable solvent, such as THF, PhMe, Et 2 0 and the like, in the presence or absence of a Lewis Acid, for example BF 3 OEt 2 .
  • Suitable organometallic reagents include organo lithium and Grignard reagents.
  • the reaction temperature may for example be in the range -78°C to room temperature, preferably less than 0°C.
  • the reaction time will vary based on the reagents used but those skilled in the art will be able to monitor the progress of the reaction and thereby judge the optimal reaction time.
  • Suitable conditions to prepare lc from lb include Zn in acetic acid or mixed solvent systems which include acetic acid in addition to organic solvents that do not interfere with the reaction, for example THF.
  • the reaction temperature may for example be in the range 0°C to solvent reflux, typically 0°C to room temperature.
  • the reaction time may typically vary from 0.5 hours to 24 hours.
  • Suitable conditions to convert lc to Id include reaction with
  • reaction temperature may for example be in the range -78°C to room temperature.
  • reaction time may vary from 5 minutes to 24 hours.
  • Suitable conditions to convert Id to le include reaction with triflic anhydride in a suitable solvent, such as DCM, in the presence of a base, such as pyridine.
  • a suitable solvent such as DCM
  • the reaction temperature may for example be in the range -78°C to room temperature, typically -20°C to 0°C.
  • the reaction time may vary from 5 minutes to 24 hours.
  • Suitable conditions to convert le to If include those described in reference 1.
  • MCM 4-methoxybenzyl
  • Suitable conditions to convert If to lg include transition metal (e.g. Pd) catalysed coupling reactions
  • suitable conditions include those described by Buchwald (for example Chemical Science, 2011, 2(1), 27-50; Chemical Science, 2011, 2(1), 57- 68).
  • Particular conditions include Pd(OAc) 2 as palladium source or precatalyst, NaOt- Bu as a base, t-BuDavePhos as ligand for palladium, dioxane as solvent and reaction temperature 120°C.
  • the reaction temperature may for example be in the range room temperature to solvent reflux, and the reaction time from 5 minutes to 1 week.
  • the same transformation may be effected by treating If with a base such a triethylamine and the like in a solvent, such as acetonitrile or NMP.
  • a base such as triethylamine and the like in a solvent, such as acetonitrile or NMP.
  • the reaction can be performed under microwave conditions in the range 80°C to 150°C, and reaction time from 0.5 to 24 hours.
  • a base such as DBU
  • This reaction can be performed under the same conditions as those described in Synth. Commun. 2002, 32 (2), 265-272, for example.
  • the reaction can be performed using 1 equivalent to a large excess of base.
  • the reaction temperature is usually room temperature to solvent reflux temperature.
  • the reaction time is usually 0.5 to 24 hours.
  • a base such as K 2 CO 3
  • the reaction can be performed using 1 equivalent to a large excess of base.
  • the reaction temperature may for example be in the range 50°C to 100°C, and the reaction time from 0.5 to 24 hours.
  • alkyli denotes a suitable alkyl group (e.g. a Ci_ 6 alkyl group such Me, Et, Pr, Bu, z ' -Pr, i- Bu or t-Bu).
  • a Ci_ 6 alkyl group such Me, Et, Pr, Bu, z ' -Pr, i- Bu or t-Bu.
  • General Preparation Method 3 may be used to prepare compounds of formula (I) according to the present invention wherein R is a pyrimidinyl group of formula (II) as described herein above, from intermediates such as If (Scheme 3).
  • W 1 denotes a suitable alkyl group (e.g. a Ci_ 6 alkyl group such Me, Et, Pr, Bu, z ' -Pr, z ' -Bu, t-
  • Pyrrolidine derivative If can be prepared as described in General Preparation Method 1 and can be converted to the corresponding guanidine 3a (Step 3.1) by reaction with reagents such as 1-pyrazolecarboxamidine (lH-pyrazole-l-carboximidamide).
  • the reaction temperature may for example be in the range 0°C to solvent reflux temperature, typically room temperature.
  • the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • the reaction solvent is not limited as long as it does not interfere with the reaction. Suitable solvents include DMF, DMA, NMP and the like.
  • reaction may require a non-nucleophilic bases, for example TEA, DIPEA or diisopropylamine as 1-pyrazolecarboxamidine is generally used as a hydrochloride salt.
  • a non-nucleophilic bases for example TEA, DIPEA or diisopropylamine
  • alternative reagents may be used in place of 1-pyrazolecarboxamidine and that such reagents may deliver a protected guanidine analogue of 3a.
  • Those skilled in the art will be able to select appropriate reagents and be able to effect the deprotection, if required at the appropriate stage.
  • Compound 3a can be condensed with either diketone derivatives 3f or with beta- ketoester derivatives 3g to give compounds such as 3b or 3c, respectively, as depicted in Step 3.2 and Step 3.4.
  • the reaction temperature may for example be in the range 0°C to solvent reflux temperature, typically reflux.
  • the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • Compounds 3f and 3g are commercially available or can be prepared by those skilled in the art.
  • Compounds such as 3c can be further functionalised by alkylation to give derivatives 3d under standard conditions as depicted in Step 3.5, whereby LG is a leaving group such as halogen (CI, Br, I) or OTf, OMs, OTs or the like and W is for example a Ci_ 6 alkyl.
  • LG is a leaving group such as halogen (CI, Br, I) or OTf, OMs, OTs or the like and W is for example a Ci_ 6 alkyl.
  • 3c may be converted to 3e (Step 3.7) wherein LG 1 is a leaving group such as halogen (CI, Br, I), for example by treatment with POCI 3 , or LG 1 is OTf, OTs or OMs.
  • LG 1 is a leaving group such as halogen (CI, Br, I), for example by treatment with POCI 3 , or LG 1 is OTf, OTs or OMs.
  • Compound 3e can then be reacted with nucleophiles (Step 3.8) to give
  • nucleophiles examples include alcohols, amines and carbon nucleophiles such as boronic acids and stannanes and the like. Those skilled in the art will appreciate that when a carbon nucleophile is used then a transition metal catalyst will be required, for example a Pd catalyst.
  • Intermediate la can be prepared as shown in Scheme 4.
  • Pi and alkyli are as defined in Scheme 1; W is as defined in Scheme 3, alkyl 2 is a suitable alkyl group (e.g. a Ci_ 6 alkyl group such Me, Et, Pr, Bu, z ' -Pr, z ' -Bu or t-Bu) and LG is a suitable leaving group (e.g. halogen (CI, Br, I), OTf, OMs OSu or OTs). Additionally, where there are two alkyl 2 groups present in a compound these groups may form a ring.
  • a suitable alkyl group e.g. a Ci_ 6 alkyl group such Me, Et, Pr, Bu, z ' -Pr, z ' -Bu or t-Bu
  • LG is a suitable leaving group (e.g. halogen (CI, Br, I), OTf, OMs OSu or OTs).
  • Conditions to form these protected intermediates include those described in Reference 1.
  • Pi is MPM or DMPM the protecting groups can be added as described in Reference 1, p. 581, or by reductive alkylation using 4-methoxybenzaldehyde or 2,4-dimethoxybenzaldehyde.
  • the steps depicted in Scheme 4 involve chemistry that will be known to those skilled in the art. Further details can be found in references 3 and 4. Additional information on how certain reaction steps in Scheme 4 may conveniently be performed are provided herein below.
  • Compounds 4f are either commercially available or may be prepared by incorporation of a protecting group Pi as outlined above. 4f can be reacted with allyl bromide, 4e, as in Step 4.4 to give compounds such as 4d.
  • the reaction temperature may for example be in the range -20°C to 0°C and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • the reaction solvent is not limited as long as it does not interfere with the reaction. Suitable solvents include DMF, DMA, NMP and the like.
  • reaction temperature may for example be in the range -78°C to 0°C and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • Step 4.7 Hydroxyimine formation
  • the reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours to give 4k.
  • Cyclisation of 4k using NaOCl as in Step 4.8 affords intermediate la.
  • intermediate 4c can be prepared via a different synthetic sequence.
  • N-alkylation of allylamine 4a with bromoacetate 4b (step 4.1) can give access to N- allylglycine derivative 4c followed by subsequent protection with PiLG (step 4.2).
  • Suitable conditions to convert 4a to 4c can be accomplished in a suitable solvent such as diethyl ether, tetrahydrofuran, or the like. This reaction can be performed under the same conditions as those described in Carbohydrate Research 2005, 340, 2457-2468 for example.
  • the reaction temperature may for example be in the range 0°C to room temperature, and the reaction time from lh to 1 week.
  • Suitable conditions to convert 4c to 4d include those described in reference 1.
  • Aldehyde 4j may also be prepared from compound 41 which is first protected with PiLG (step 4.9).
  • the resulting compound 4m can undergo alkylation with allyl bromide 4e to afford 4i (step 4.10), which may also be accessed from bromoacetal 4g.
  • the acetal 4i can be converted into aldehyde 4j (step 4.10).
  • Suitable conditions to convert 4i to 4j include those described in reference 1.
  • Suitable conditions to convert 4m to 4i include use of base such as sodium hydride, cesium carbonate, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like.
  • the reaction temperature may for example be in the range 0°C to room temperature, and the reaction time from lh to 1 week.
  • Suitable conditions to convert 4i to 4j include use of acid such as formic acid, hydrogen chloride, or the like.
  • the reaction temperature may for example be in the 0°C to room temperature, and the reaction time from lh to 1 week.
  • intermediate lb may be prepared as outlined in Scheme 5.
  • Pi and alkyli are as defined for Scheme 1 and LG is a suitable leaving group, (e.g. halogen (CI, Br, I) or OTf, OTs, OMs and the like).
  • a suitable non-nucleophilic base for example TEA, DIPEA or diisopropylamine, is required as well as a suitable solvent such as DCM.
  • This reaction affords the ketone derivative 5c and the reaction temperature may for example be in the range room temperature to solvent reflux, typically room temperature and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • Oxime formation (Step 5.6) can then be carried out using hydroxylamine hydrochloride in a suitable alcoholic solvent, e.g. in buffered or basic consitions.
  • the reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours to give 5h.
  • compound 5c can be prepared from either compound 4d or commercialy available compound 5e in a three steps sequence, as depicted in Scheme 5.
  • allyl amine 6b can be reacted with compounds 4g (Step 6.1).
  • Suitable conditions include use of base such as sodium hydride, cesium carbonate, or the like in a suitable solvent such as dimethylformamide, tetrahydrofuran, or the like.
  • the reaction temperature may for example be in the range 0°C to reflux, and the reaction time from lh to 1 week.
  • the resulting acetal 6e could be converted into the aldehyde 6f and then to oxime 6g when treated with hydroxylamine hydrochloride in a suitable alcoholic solvent (step 6.9), e.g. in buffered conditions.
  • the reaction temperature may for example be in the range 0°C to reflux, and the reaction time from lh to 1 week.
  • the resulting acetal 6e could be converted into the aldehyde 6f and then to oxime 6g when treated with hydroxylamine hydrochloride in a suitable alcoholic solvent (step 6.9), e.g
  • reaction temperature may for example be in the range room temperature to solvent reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • 1,3-Dipolar cycloaddition reaction as in Step 6.10 is then achieved by conversion of 6g to a nitrile oxide derivative which reacst with the olefin moiety in the same molecule to afford the cyclic compound 2a.
  • Suitable conditions include the use of N-chlorosuccinimide and sodium hypochlorite in a suitable solvent such as dichloromethane, chloroform, or the like.
  • the reaction temperature may for example be in the range 0°C to solvent reflux temperature, and the reaction time from lh to 48 hours. This reaction can be performed under analogous conditions as those described as Org. Lett. 2007, 9, 753-756,
  • Allyl amines of formula 6b may be prepared in one step from either allylamine or allylbromide following procedure as those described in Angew.Chem. Int. Ed.. 2011, 50, 5678-5681, JOC 2005, 70, 5164-5173 and Tet. Lett. 1998, 5P3131-3141.
  • a general method of preparing compounds 6b wherein R is a pyrimidine, for example compound 9d, is described in Scheme 9.
  • Compounds 4g are either commercially available or can be prepared by known chemistry.
  • intermediate 2b may be prepared as outlined in Scheme 7.
  • alkyli is as defined for Scheme 1
  • LG is as defined for Scheme 4.
  • the reactions and conditions depicted in Scheme 7 will be known to those skilled in the art. Further details can be found in references 3 and 4. Additional information on how certain reaction steps in Scheme 7 may conveniently be performed are provided herein below.
  • allyl amine 6b can be reacted with derivatives of 5a (Step 7.1)
  • Suitable conditions include use of base such as sodium hydride, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like.
  • the reaction temperature may for example be in the range 0°C to reflux, and the reaction time from lh to 48h.
  • the resulting ketone 7a can be converted to oxime 7b when treated with hydroxylamine hydrochloride in a suitable alcoholic solvent (step 7.2), e.g. in buffered conditions.
  • the reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
  • intermediate 7a can be prepared via a different synthetic sequence.
  • N-alkylation of allylamine 6b with either 2-chloro-N-methoxy-N-methylacetamide 7c can give the Weinreb amide derivative 7d or reaction with reagent of type 5e can give morpholinoethanone compound 7e (Step 7.4), in the presence of a base such as sodium hydride, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like. Subsequently both compounds 7d and 7e can be converted into compound 7a when treated with a suitable organometallic reagent (R x -M) (Step7.5).
  • R x -M organometallic reagent
  • N-( a -methylbenzyl)hydroxylamine may be used not only to deliver a diastereomeric product but also to influence the diastereomeric ratio.
  • suitable Lewis acids include Ti(OEt)4.
  • solvents THF THF.
  • the reaction temperature may be in the range room temperature to solvent reflux, typically 50°C to 100°C.
  • the reaction time may vary from 1 hour to 1 week.
  • compounds 8b and 8d can be converted to derivatives such as lc (Schemel) and 2c (Scheme 2) respectively by reduction of the N-0 bond, for example by treatment with Zn in AcOH or
  • Scheme 9 depicts several routes for preparing intermediate compounds that may be used in preparing Compounds of formula (I), wherein R is a pyrimidiyl group.
  • R is as defined for formula (I)
  • R , R are as defined for formula (II)
  • W is as defined for Scheme 3
  • alkyl 2 is as defined for Scheme 4 and W is, for example, a Ci_
  • Allyl amine 4a may be converted to the corresponding guanidine 9b (as described in Scheme 9) which may then be condensed with a beta-ketoester derivative 3g to give pyrimidone derivative 9c. Selective O-alkylation may be achieved to give 9d which may then undergo further alkylation to give 9e. Compound 9e may then be transformed to Compound (I) via a similar sequence to that shown in Schemes 5, 6, 7 and 8.
  • beta-ketoester derivative maybe replaced by a 1,3-diketone derivative such as 3f (Scheme 3). If 3f is used in place of 3g then similar reactions may be undertaken as those depicted in Scheme 3 and the resultant product maybe transformed to Compound (I) using similar reactions to those depicted in Schemes 5, 6,
  • Alternative starting materials to 4a include, but are not limited to, 9a, 4c, 5b and 41 which are depicted in Scheme 9.
  • the transformation of these starting materials may be accomplished as shown in Scheme 9 employing reaction conditions known to those skilled in the art.
  • Compounds 9n and 9r may be transformed to Compound (I) using similar sequences to those described in Schemes 6, 7 and 8.
  • AIBN Azobisisobutyronitrile
  • BOC & Boc tert-butoxycarbonyl
  • br broad
  • Bn benzyl
  • Bu butyl
  • BuLi n-butyl lithium
  • d doublet
  • DBU 1,8- Diazabicyclo[5.4.0]undec-7-ene
  • DCM dichloromethane
  • dd doublet of doublets
  • DIBAL disobutylaluminium hydride; DMF ( ⁇ , ⁇ -dimethylformamide); DMAP (4-N,N- dimethylaminopyridine); DMSO (dimethylsulfoxide); EDC & ED AC: (N-3(- dimethylaminopropyl)N'ethylcarbodiimide hydrochloride); Et: ethyl; Et20: diethyl ether; EtOAc: ethyl acetate; EtOH: ethanol; h, hr, hrs: hours; HCl: hydrochloric acid; HPLC: high performance liquid chromatography; LCMS, LC/MS & LC-MS: liquid chromatography / mass spectrometry; m: multiplet; Me: methyl; MeCN: acetonitrile; MeOH: methanol; MS: mass spectrometry; MDAP: mass directed auto purification; min & mins: minutes; NaOH: sodium hydroxide; NBS:
  • designation as a mono hydrochloride salt may mean that the compound is a mono hydrochloride, a dihydrochloride, a trihydrochloride or that the stoichiometry of the hydrochloride to compound may may be anywhere from 0 - 3.
  • G2 purified by column chromatography (normal phase, (1 lg/28g/55g/l 10g/375g), Biotage SNAP cartridge KP-NH, ( 12mL/25mL/5 OmL/ 1 OOmL) per min, gradient xx% to xx% EtOAc in n-hexane / MeOH in DCM).
  • sample name/number solution containing 1.2mg (Sample name/number) in 1.2mL DCM
  • chromatographic separation on the following 4 ChiralPAK® (i.d 4.6 mm x length 250 mm) chiral columns: IA (#1), IB (#2), IC (#3), and ID (#4).
  • sample name/number x mg was dissolved in DCM (x mL), loaded into a vial (3.8 mL capacity) and subjected to chromatographic separation using preparative (column type) (i.d. 20 mm; length 250 mm) and (Solvent mixture) (v/v) as eluent.
  • injection volume 1500 ⁇ Flow rate: 18.0 mL/min.
  • Example 1 f ⁇ )-f4aR*,7aS*)-6-f5-Fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-f2- fluorophenyl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine l-(9)
  • tert-butyl 3a,4- dihydro-3H-pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, i-(5), (20.3 g) was then added dropwise over 15 min as a solution in 100 mL THF, keeping the internal temperature below -72°C. After stirring at -78°C for a further 3h, the reaction was quenched by the addition of sat. aq. NH 4 CI (200 mL) and allowed to warm slowly to room temperature and stir overnight. Brine (200 mL) was then added and the mixture was extracted with
  • Example 2 f ⁇ )-f4aR*,7aS*)-6-f5-fluoro-4-methoxypyrimidin-2-yl)-7a-f2- fluorophenyl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • Example 3 ( ⁇ )-(4aR*.,7aS*)-6-( 5-fluoro-4-methoxy-6-( trifluoromethvDpyrimidin- 2-yl)-7a-(2-fluorophenyl)-4,4a,5,6J,7a-hexahvdropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine
  • reaction mixture was diluted with ethyl acetate (50 mL), washed with water (2 x 25 mL) then dried (MgS0 4 ) and evaporated. The residue was dissolved in dichloromethane and applied to a 10 g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.06 g) as a white solid.
  • Example 4 f ⁇ )-f4aR*,7aS*)-6-f5-fluoro-4-ffluoromethyl)-6-methoxypyrimidin-2- yl)-7a-f2-fluorophenyl)-4,4a,5.,6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • Example 5 ( ⁇ )-( 4aR*,7aS*)-6-( 4-( difluorometh yl)-6-methoxypyrimidin-2-yl)-7a- fl-fluorophenvD ⁇ a ⁇ a-hexahvdropyrroloiS ⁇ -dl il ⁇ lthiazin-l-amine
  • Example 6 f ⁇ )-f4aR*,7aS*)-6-f4-fdifluoromethyl)-5-fluoro-6-methoxypyrimidin-2- yl)-7a-f2-fluorophenyl)-4,4a,5.,6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • Example 8 ( ⁇ )- - «4a ⁇ 7aS*)-2-amino-7a-q-fluorophenyl)-4a,5,7Ja- tetrahvdropyrrolo[3. l 4-dl [l. l 31thiazin-6f4H)-yl)-5-fluoro-6-methoxypyrimidin-4- vDmethanol
  • reaction mixture was diluted with ethyl acetate (100 ml) and washed with water (2 x 20 ml) then dried (MgS04) and evaporated to a brown foam (0.85 g) that contained rac-(2-((4aR*,7aS*)-2-benzamido- 7a-(2-fluorophenyl)-4a,5,7,7a-tetrahydrop
  • Example 9 f ⁇ )-f4aR*,7aS*)-7a-f2-fluorophenyl)-6-f6-methoxy-4- ftrifluoromethyl)pyridin-2-yl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2- amine
  • Example 11 f ⁇ )-f4aR*,7aS*)-7a-f2-fluorophenyl)-6-f6-methoxy-4- fmethoxymethyl)pyridin-2-yl)-4,4a,5.,6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2- amine
  • tetrahydrofuran 50 ml at 0°C under nitrogen was added dropwise a solution of borane- tetrahydrofuran complex (1.0M solution in tetrahydrofuran; 40 ml) over fifteen minutes. After the addition was complete, the cooling bath was removed and the mixture allowed to warm to room temperature. After three hours, the mixture was cooled to 0°C and borane-tetrahydrofuran complex (1.0M solution in tetrahydrofuran; 40 ml) was added over fifteen minutes. After the addition was complete, the cooling bath was removed and the mixture allowed to warm to room temperature and stirred for seventeen hours.
  • reaction mixture was cooled to 0°C, quenched with 1.0M aqueous sodium hydroxide solution (30 ml), diluted with saturated aqueous ammonium chloride solution (50 ml) and extracted with diethyl ether (2 x 100 ml), the combined organic layer washed with brine then dried (Na2SC"4) and evaporated. The residue was triturated with hexane and filtered to afford (2-chloro-6-methoxypyridin-4-yl)methanol (2.0 g) as a white solid.
  • reaction mixture was evaporated to dryness and the residue was purified by silica gel column chromatography (gradient from 0 to 50% ethyl acetate / hexane) to afford the title compound (0.039 g) as a white foam.
  • Example 13 f ⁇ )-f4aR*,7aR*)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fpyridin-2-yl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • dichloromethane (20 ml) at -15°C was added a solution of benzoyl isothiocyanate (0.553 ml, 4.111 mmol) in dichloromethane (6.0 ml) and the reaction mixture stirred at - 15°C for ninety minutes. Solvent was removed in vacuo and the residue redissolved in dichloromethane and applied to a 20g SNAP KP-Si column.
  • reaction mixture was quenched with sat. NaHC0 3 (aq) at -40°C before the reaction mixture was allowed to warm to RT.
  • the layers were separated and the aqueous further extracted with DCM (x2).
  • the combined organics were then washed with brine before being dried over MgSC"4, filtered and solvent removed in vacuo to afford the title compound (44 mg, 0.100 mmol, 100 % yield) as a yellow oil.
  • Example 14 f4aR,7aR)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fpyridin-2-yl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • reaction mixture was stirred for seven hours, stored in the freezer at ⁇ -20°C for two days then poured into saturated aqueous ammonium chloride (100 ml), diluted with ethyl acetate (100 ml) and extracted. The organic layer was washed with brine then dried (MgSC"4) and evaporated and the residue was purified by silica gel column chromatography (gradient from 0% to 20% ethyl acetate / hexane) to afford the title compound (2.986 g) as a pale yellow oil.
  • reaction mixture was diluted with ethyl acetate (50 ml) and washed with aqueous saturated sodium bicarbonate (2 x 25 ml) and aqueous saturated sodium chloride (25 ml) then dried (MgS04) and evaporated to afford the title compound (0.813 g) as a yellow foam.
  • the reaction mixture was diluted with ethyl acetate (100 ml), washed with water (50 ml) and brine (50 ml) then dried (MgSC"4) and evaporated (Note: the aqueous was back extracted several times with dichloromethane).
  • the residue was purified by silica gel column chromatography (gradient from 0 to 100% ethyl acetate / hexane followed by 5% methanol / ethyl acetate) to afford the title compound (0.613 g) as a pale yellow solid.
  • N-((4aR,7aR)-6-(5-fluoro-4-methyl-6-oxo-l ,6- dihydropyrimidin-2-yl)-7a-(pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.61 g) in N,N-dimethylformamide (20 ml) was added potassium carbonate (0.27 g) followed by methyl iodide (0.082 ml) in N,N- dimethylformamide (5 ml) and the mixture stirred at room temperature for one hour.
  • reaction mixture was diluted with ethyl acetate (250 ml), washed with water (2 x 50 ml and 100 ml) then dried (MgS04) and evaporated.
  • the residue was purified by silica gel column chromatography (gradient from 0 to 50% ethyl acetate / hexane) to afford the title compound (0.343 g) as a white foam.
  • reaction mixture was diluted with ethyl acetate (100 mL), washed with water (3 x 50 mL) then dried (MgS0 4 ) and evaporated. The residue was dissolved in dichloromethane and applied to a 25g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.488 g) as a white foam.
  • Example 17 ( ⁇ )- (4aR*,7aS*)-7a- ,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.,6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • Example 18 ( ⁇ )-( 4aR*,7aR*)-6-( 5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fthiophen-l-vD ⁇ a ⁇ ⁇ a-hexahvdropyrroloiS ⁇ -dl il lthiazin-l-amine
  • Benzoyl isothiocyanate (3.72 mL, 27.7 mmol) was added dropwise to a solution ( ⁇ )-(3R*,4R*)-tert-butyl 3-amino-4-(hydroxymethyl)-3-(thiophen-2-yl)pyrrolidine-l- carboxylate (6.35 g, 21.3 mmol) in DCM (37 mL). The reaction was stirred at r.t. for 2h and was then concentrated under reduced pressure. The residue was purified by silica gel column chromatography (gradient from 20% to 60% EtOAc in Hexanes) to afford the title compound as a colorless foam (8.18 g, 83%> over 2 steps).
  • the reaction was stirred at r.t. for 2h and at reflux for 2h.
  • the reaction mixture was diluted with EtOAc and saturated aqueous NaHC0 3 solution.
  • the two layers were separated and the aqueous phase extracted with EtOAc (x2).
  • the combined organic extracts were washed with brine, dried over Na 2 S0 4 and concentrated under reduced pressure.
  • the residue was purified by silica gel column chromatography (gradient from 60% to 100% EtOAc in Hexanes) to give the desired product as a colorless foam (3.27g, 75%> over 2 steps).
  • Example 20 ( ⁇ )-( 4aR*,7aR*)-7a-cvclopentyl-6-( 5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5. l 6. l 7. l 7a-hexahvdropyrrolo[3. l 4-dl [l. l 31thiazin-2-amine
  • the combined organic extracts were dried over MgS0 4 and evaporated to give an oil (8.24 g).
  • the oil was purified by silica gel chromatography, collecting fractions containing molecular weight 282 on LCMS analysis, to afford a crude sample presumed to contain 20-(l) (3.30 g).
  • the oil was dissolved in THF (20 mL) and acetic acid (2 mL) was added, followed by zinc powder (1.00 g). After stirring vigorously for 16 h, the mixture was filtered through celite, washing with MeOH (100 mL). The filtrate was evaporated and NaHC0 3 (sat., aq., 50 mL) was added.
  • Example 21 f ⁇ )-f4aR*,7aR*)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- ( tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7 a-hexahydropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine
  • Tetrahydro-2H-pyran-4-carboxylic acid (3 g, 23.052 mmol) was dissolved in dry DCM (20 mL) and one drop of DMF added. The reaction mixture was cooled to 0°C before Oxalyl chloride (2.212 ml, 25.357 mmol) was added dropwise and the reaction mixture stirred at rt under nitrogen for 2 hours. Solvent was removed in vacuo after this time, before the residue was redissolved in DCM (20 mL) and the resulting solution was added dropwise to a solution of Trimethylsilyldiazomethane (20.75 ml, 41.493 mmol) (2M in hexane) at -10°C.

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Abstract

A compound of formula (I) or a pharmaceutically acceptable salt thereof, wherein R1 to R9 are as defined in the specification and which compound has an Αβ production inhibitory effect and may be useful as a prophylactic or therapeutic agent for a neurodegenerative disease caused by Αβ and typified by Alzheimer-type dementia (AD) or Down's syndrome.

Description

HEXAHYDROPYRROLOTHIAZINE COMPOUNDS
The present invention relates to an isothiourea derivative and pharmaceutical use thereof. More particularly, the present invention relates to an isothiourea derivative which has an amyloid-β (hereinafter referred to as Αβ) protein production inhibitory effect or a beta-site amyloid-β precursor protein cleavage enzyme 1 (hereinafter referred to as BACEl or beta-secretase) inhibitory effect and which may be effective for treating a neurodegenerative disease caused by Αβ protein, in particular, Alzheimer' s-type dementia (AD), Down's syndrome or the like, and to a pharmaceutical composition comprising the isothiourea derivative as an active ingredient.
Alzheimer's disease is characterized by degeneration and loss of neurons as well as formation of senile plaques and neurofibrillary tangles. Currently, only the symptoms of Alzheimer's disease are treated using a symptom-improving agent typified by an acetylcholinesterase inhibitor, and a fundamental remedy to inhibit progression of the disease has not yet been developed. It is necessary to develop a method for controlling the causative pathology in order to create a fundamental remedy for Alzheimer's disease.
It is believed that Αβ -proteins, as breakdown products of amyloid precursor proteins (hereinafter referred to as APP) are critical to the degeneration and loss of neurons and onset of symptoms of dementia. Αβ-proteins have, as main components, Αβ40 consisting of 40 amino acids and Αβ42 consisting of 42 amino acids wherein the two additional amino acids are present at the C-terminal. The Αβ40 and Αβ42 proteins are known to be highly prone to aggregation and to be the main components of the senile plaques linked to AD (Tanzi & Bertram, Cell 2005, 120: 545-555; Haass & Selkoe, Nat Rev Mol Cell Biol 2007, 8: 101-112).
Multiple mutations in the APP gene have been associated with early and late onset Alzheimer's disease. The homozygous expression of one such mutation, A673V at the BACEl cleavage site, has been linked to early onset AD (EOAD) (Di Fede et al, Science 2009, 323, 1473-1477; Giaccone et al Acta Neuropathol. 2010, 120, 803-812). This mutation has, in cellular assays, been shown to significantly increase Αβ40 and
Αβ42 production providing further support that genetic mutations in APP which increase its processing by BACEl result in increased amyloid production and AD. Similarly, a K670N/M671L double mutant (Swedish mutation), which has previously been shown to be linked to early onset AD (Mullan et al Nat Genet. 1992 1(5), Aug, 345-347) produced even more pronounced increases in Αβ production than the A693V mutant.
A recent study of 1795 Icelanders (Jonsson et al, Nature 2012, 488, 2 August, 96-99) identified an APP mutation (A693T) which protects against Alzheimer's disease and cognitive decline. This mutation is proximal to the BACE cleavage site (position two of Αβ) and was found to result in approximately 40% reduction of Αβ peptide production in an in vitro cellular assay which was attributed to the peptide being processed -50% less efficiently with ~ 50%> decrease in the rate of cleavage by BACE1. This (heterozygous) mutation was previously identified in a single individual (Peacock et al, Neurology, 1993, 43, 1254-1256) who lived to 65 years of age and showed no signs of dementia and no amyloid pathology upon autopsy. The implication of these findings is that reducing the production of amyloid-β could prevent or delay the onset of AD. Furthermore, analysis of non-AD populations with and without the A693T mutant revealed that A693T carriers showed better conservation of cognitive function (Jonsson et al, Nature 2012, 488, 2 August, 96-99). Three homozygotes carrying the A673T mutation were found within the set and none were found to have suffered from dementia, including one who had died at the age of 88. Thus, there is strong genetic evidence linking APP mutations to AD pathology, both as protective and pathogenic.
A study on the rate of clearance of Αβ from the CNS (Mawuenyeg et al Science
2010, 330, 24 December, 1774), reported that individuals with late onset AD (LOAD) had a 30%> reduction versus controls. This data suggests that increasing the clearance of Αβ from the CNS or decreasing the formation of Αβ in the CNS by 30%, for example by inhibiting BACE1, may prevent or delay the onset of AD.
Accordingly, a compound that reduces production of Αβ40 and Αβ42 is predicted to be a disease progression inhibitor or prophylactic agent for Alzheimer' s- type dementia (AD).
In addition to Alzheimer's-type dementia (AD), there are other amyloidogenic conditions such as Down's syndrome for which a compound that reduces production of Αβ40 and Αβ42 may be beneficial (Mann, Neurobiol. Aging, 1989, 10: 397-399; Mann et al., J. Neurol Sci. 1989, 92: 247-260). Early onset dementia and Alzheimer's type dementia (AD) are common outcomes in individuals with Down's syndrome and evidence suggests Αβ deposition may be a causative factor in cognitive impairment associated with Down's syndrome. Another common co-morbidity in Down's syndrome is diabetes, being seven times more likely in individuals with Down's syndrome than the general population, and this increased frequency may be attributed to a gene product of chromosome 21, the triplication of all or some of which is
characteristic of Down's syndrome (trisomy 21). As the gene encoding BACE2 is on chromosome 21 (Webb and Murphy, Curr. Gerontol. Geratr. Res, 2012) and BACE2 and one of its substrates, Tmem27, have been linked to diabetes, BACE2 inhibitors may be useful for the treatment of diabetes (Esterhazy et al, Cell Metab., 2011, 14: 365-377). Accordingly, a dual BACE 1/2 inhibitor may provide an effective treatment for amyloid pathology and diabetes in the general or Down's syndrome populations. Examples of other neurodegenerative diseases that might be treatable or preventable with a compound that reduces progression of Αβ40 and Αβ42 include cerebrovascular amyloid angiopathy (CAA), mild cognitive impairment (MCI), memory loss, presenile dementia, senile dementia, hereditary cerebral hemorrhage with amyloidosis, and other degenerative dementias such as dementias of mixed vascular and degenerative origin, dementia associated with supranuclear palsy, dementia associated with cortical basal degeneration, dementia associated with Parkinson's Disease (PD), and dementia associated with diffuse Lewy Body type of AD. Further conditions that might be treatable or preventable with a compound that reduces progression of Αβ40 and Αβ42 include Creutzfield- Jakob Disease (CJD), peripheral nerve injury, peripheral neuropathy, progressive supra-nuclear palsy, stroke, amyotrophic lateral sclerosis (ALS), autoimmune diseases, inflammation, arterial thrombosis, anxiety disorders, psychotic disorders, epilepsy, seizures, convulsions, stress disorders, vascular amyloidosis, pain, Gerstmann-Straeussler-Scheinker syndrome, scrapie, encephalopathy,
spino cerebellar ataxia, Wilson's Disease, Graves Disease, Huntington's Disease,
Whipple's Disease, Kostmann Disease, glaucoma, hereditary cerebral hemorrhage with amyloidosis, cerebral hemorrhage with amyloidosis, vascular amyloidosis, brain inflammation, fragile X syndrome, stroke, Tourette's syndrome, inclusion body myositis, stress disorders, depression, bipolar disorder and obsessive compulsive disorder.
Farah et al. (J. Neurosci. 13 April 2011, 31(15):5744-5754) have described how
BACE1 inhibitors may also be useful in a therapeutic approach to accelerate
regeneration and recovery after peripheral nerve damage.
Αβ is produced by the cleavage of APP by beta-secretase (BACE1) and subsequently by gamma-secretase. For this reason, attempts have been made to create compounds which inhibit Αβ production. Examples of compounds having an Αβ or
BACE 1 inhibitory effect are described for example in WO2011009897,
WO2011063233, WO2011063272, WO2011090911, WO2011002409, WO2011005738, WO2009131975, WO2009022961, WO2009091016, WO2009097401 and
WO2009097278. Several Αβ inhibitors have been investigated in clinical studies as potential treatments for AD. For example, the compound MK-8931 has been reported to reduce CSF Αβ40, Αβ42 and βΑΡΡβ in AD patients (Forman et al, 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy, 7th March 2013). Other examples include LY2811376 (J. Neurosci 2011, Vol. 31(46): 16507-16516) and LY2886721 (May et al., 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy, 7th March 2013).
The brain is protected by several barriers including the blood brain barrier (BBB) and transporters (Hitchcock and Pennington, J. Med. Chem. 2006, 29, 7559; Ueno, Curr. Med. Chem. 2007, 14, 1199; Gloor et al, Brain Res. Rev. 2001, 36, 258). Several efflux transporters have been characterised which prevent compounds entering the brain. One of the best characterised and most prominent in preventing the CNS penetration of xenobiotics is P-glycoprotein (Pgp) (Kusuhara and Sugiyama, Drug Discovery Today, 2001 , 6, 150; Mahar Doan et al, J. Pharm. Expt. Ther. 2002, 303, 1029; Lin, Drugs of Today 2004, 40, 5; Lin & Yamazaki, Clin Pharmacokinet. 2003, 42, 59; Schinkel, Adv. Drug Deliv. Rev. 1999, 36, 179). It has been shown that Pgp efflux is an important issue to overcome for BACE-1 inhibitors (Hussain et al, J. Neurochem. 2007, 100, 802) and difficulties have been encountered in identifying BACE-1 inhibitors which are not subjected to Pgp efflux (e.g. Hussain et al, J. Neurochem. 2007, 100, 802 - 80;
Meredith et al., J. Pharm. Expt. Ther. 2008, 326, 502-513; and Iserloh et al., Bioorg. Med. Chem. Lett. 2008, 18, 418). Moreover, in some instances where Pgp efflux has been overcome high brain tissue binding has reduced efficacy (Malamas et al, Bioorg. Med. Chem. Lett. 2010, 20, 6597). Therefore, it would be desirable to identify new beta-secretase inhibitors that are not Pgp substrates and have a reasonable unbound fraction in brain tissue.
An object of the present invention is to provide compounds that have an Αβ production inhibitory effect or a BACE1 inhibitory effect and which may be useful as prophylactic or therapeutic agents for a neurodegenerative disease caused by Αβ and typified by Alzheimer-type dementia (AD) or Down's syndrome.
The invention provides a compound of formula (I):
Figure imgf000005_0001
or a pharmaceutically acceptable salt thereof, wherein
Pv1 is a 5- to 10- membered carbocyclic group or a 5- to 10- membered
heterocyclic group, either of which is optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, a carbamoyl group which is optionally substituted with one or two Ci_6 alkyl groups, a sulfonylamino group which is optionally substituted with one or two Ci_6 alkyl groups, an aminosulfonyl group which is optionally substituted with one or two Ci_6 alkyl groups, an amino group which is optionally substituted with one or two Ci_6 alkyl groups which are each optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C2-6 alkenyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C2_6 alkynyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a Ci_6 alkoxy group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a Ci_6 alkylthio group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, and a Ci_6 alkyl group which is optionally
substituted with 1 to 3 substituents selected from Substituent Group a;
2
R is a 5- to 6- membered heteroaryl group optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, an amino group which is optionally substituted with one or two Ci_6 alkyl groups, a Ci_6 alkoxy group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, and a Ci_6 alkyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a;
R3 and R4 each independently represent a hydrogen atom, a C3-6 cycloalkyl group or a Ci_6 alkyl group optionally substituted with 1 to 3 substituents selected from Substituent Group a;
wherein each substituent selected from Substituent Group a is independently a halogen atom, a cyano group, a hydroxyl group, a Ci_6 alkoxy group or an oxo group;
R5 is a hydrogen atom or a fluorine atom;
R6, R7, R8 and R9 are independently a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a trifluoromethyl group.
The isothiourea derivative of formula (I) or pharmaceutically acceptable salt thereof according to the present invention may be a solvate thereof. Examples of a solvate include a hydrate.
In one embodiment of the invention, R is a 5- to 6- membered nitrogen- containing heteroaryl group optionally substituted with at least one substituent independently selected from a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group and a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group.
In one embodiment of the invention, R is a 5- to 6- membered nitrogen- containing heteroaryl group substituted with at least one substituent independently selected from a halogen atom, a Ci-6 haloalkyl group, a Ci-6 alkyl group and a Ci_6 alkoxy group.
In one embodiment of the invention, R is a group of formula (II),
Figure imgf000006_0001
11 12 13
wherein R , R and R are independently a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group or a C 1-6 alkyl group optionally substituted with a Ci-6 alkoxy group.
In one embodiment of the invention, R1 is a phenyl group, a pyridinyl group or a thienyl group, any of which is optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, and an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group.
In one embodiment of the invention, R1 is a phenyl group or thienyl group, either of which is optionally substituted with at least one substituent independently selected from a halogen atom, a Ci_6 haloalkyl group or a Ci_6 haloalkoxy group.
In one embodiment of the invention, R1 is a phenyl group which is optionally substituted with at least one substituent independently selected from a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, and an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group.
In one embodiment of the invention, R1 is a group of formula (III),
Figure imgf000007_0001
wherein R a is a hydrogen atom or a fluorine atom; and R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group.
In one embodiment of the invention, R1 is a group of formula (III) wherein R10a is a fluorine atom and R10b is a hydrogen atom.
In one embodiment of the invention, R1 is a group of formula (III), wherein R10a is a hydrogen atom and R10b is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group. In one embodiment of the invention, R is a pyridinyl group which is optionally substituted with at least one subsitituent independently selected from a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group and a Ci-6 alkyl group.
In one embodiment of the invention, R1 is a group of formula (IV),
Figure imgf000008_0001
wherein R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group or a Ci-6 alkyl group.
In one embodiment of the invention, R1 is a cyclohexyl group or cyclopentyl group, either of which is optionally substituted with at least one substituent
independently selected from a halogen atom, a Ci_6 haloalkyl group or a Ci_6 haloalkoxy group.
In one embodiment of the invention, R3, R4, R5, R6, R7, R8 and R9 are each independently a hydrogen atom.
In one embodiment, the present invention provides a compound of formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 is a phenyl group or thienyl group, either of which is optionally substituted with at least one substituent
independently selected from a halogen atom, a Ci_6 haloalkyl group and a Ci_6 haloalkoxy group; R is a 5- to 6-membered nitrogen-containing heteroaryl group substituted with at least one substituent independently selected from a halogen atom, a Ci-6 haloalkyl group, a Ci-6 alkyl group and a Ci_6 alkoxy group; and R3, R4, R5, R6, R7,
8 9
R and R are each independently a hydrogen atom.
In one aspect the present invention provides a compound of formula (IA)
Figure imgf000008_0002
or a pharmaceutically acceptable salt thereof, wherein
R2, R3, R4, R5, R6, R7, R8 and R9 are defined as for formula (I);
n is 1 or 2; and each R10 is independently a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group.
In one embodiment, the invention provides a compound of formula (IA), or a pharmaceutically acceptable salt thereof, wherein each R10 is independently a fluorine atom.
In one aspect the present invention provides a compound of formula (IB)
Figure imgf000009_0001
or a pharmaceutically acceptable salt thereof, wherein
R3, R4, R5, R6, R7, R8 and R9 are defined as for Formula (I);
n is 1 or 2; each R10 is a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group; and
11 12 13
R , R^ and R1J are independently selected from a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group and a Ci-6 alkyl group optionally substituted with a Ci-6 alkoxy group. In one aspect of this embodiment, R3, R4, R5, R6, R7, R8 and R9 are each independently a hydrogen atom.
In one embodiment, the present invention provides a compound of formula (IB), or a pharmaceutically acceptable salt thereof, wherein each R10 is fluorine; and R11, R12
13
and R are independently selected from a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci_6 hydroxyalkyl group and a Ci-6 alkyl group optionally substituted with a Ci-6 alkoxy group.
In one embodiment, the present invention provides a compound of formula (IB), or a pharmaceutically acceptable salt thereof, wherein
R11 is a Ci_6 alkoxy group;
12
R is a fluorine atom or a Ci-6 haloalkyl group;
13
R is a hydrogen atom, a Ci_6 alkyl group, a Ci_6 haloalkyl group or a Ci_6 hydroxyalkyl group.
In one embodiment, the present invention provides a compound of formula (IBa),
Figure imgf000010_0001
harmaceutically acceptable salt thereof, wherein
R is a hydrogen atom, a fluorine atom or a cyano group;
R11 is a methoxy group;
R 12 is a hydrogen atom or a fluorine atom; and
R 13 is a hydrogen atom, a methyl group, a monof uoromethyl group, a difluoromethyl group or a hydroxymethyl group.
In one aspect the present invention provides a compound of formula (IC)
Figure imgf000010_0002
or a pharmaceutically acceptable salt thereof, wherein
R2, R3, R4, R5, R6, R7, R8 and R9 are defined as for formula (I);
n is 0, 1 or 2; each R10 is a fluorine atom; and
1 2
X1 and X" are independently selected from a bond, methylene (-CH2-) and ethylene (-CH2CH2)-; and
A is methylene (-CH2-) or an oxygen atom.
In one aspect the present invention provides a compound of formula (ID)
Figure imgf000010_0003
or a pharmaceutically acceptable salt thereof, wherein R3, R4, R5, R6, R7, R8 and R9 are defined as for Formula (I);
n is 0, 1 or 2; each R10 is fluorine;
A is methylene (-CH2-) or an oxygen atom;
I 2
X1 and X" are independently selected from a bond, methylene (-CH2-) and ethylene (-CH2CH2)-; and
R II , R 1^2 and R 113J are independently selected from a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group and a Ci-6 alkyl group optionally substituted with a Ci-6 alkoxy group.
In one embodiment the present invention provides a compound of formula (ID) wherein R3, R4, R5, R6, R7, R8, R9 are each independently a hydrogen atom.
In one embodiment, the present invention provides a compound of formula (ID), or a pharmaceutically acceptable salt thereof, wherein
R11 is a Ci_6 alkoxy group;
12
R is a fluorine atom or a Ci-6 haloalkyl group;
13
R is a hydrogen atom, a Ci_6 alkyl group, a Ci_6 haloalkyl group or a Ci_6 hydroxyalkyl group.
In one aspect the present invention provides a compound of formula (IE)
Figure imgf000011_0001
or a pharmaceutically acceptable salt thereof, wherein
R3, R4, R5, R6, R7, R8 and R9 are defined as for formula (I);
n is 0 or 1; R10 is a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group or a Ci-6 alkyl group.; and
R 11 , R 1l2z and R 113J are independently selected from a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group and a Ci-6 alkyl group optionally substituted with a Ci-6 alkoxy group.
In one embodiment the present invention provides a compound of formula (IE) wherein R3, R4, R5, R6, R7, R8, R9 are each independently a hydrogen atom.
In one embodiment the present invention provides a compound of formula (IEa), or a pharmaceutically acceptable salt thereof,
Figure imgf000012_0001
wherein
R10 is a hydrogen atom, a fluorine atom or a trifluoromethyl group;
R11 is a methoxy group;
12
R is a hydrogen atom or a fluorine atom; and
13
R is a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a hydroxymethyl group.
Those skilled in the art will recognise that the compounds of formula (I) comprise chiral centers located at the 7a and 4a positions as depicted below. For the avoidance of doubt, in the present invention the compounds of formula (I) may be present either in a stereochemically pure form or as a mixture with one or more of the other possible stereoisomers, for example in a racemic mixture or diastereomeric mixture.
Figure imgf000012_0002
In one embodiment, the present invention provides a compound of formula (I) selected from:-
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine;
(4aR,7aS)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine;
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-(trifluoromethyl)pyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine;
(4aR,7aS)-6-(5-fluoro-4-(fluoromethyl)-6-methoxypyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine;
(4aR,7aS)-6-(4-(difluoromethyl)-6-methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine; (4aR,7aS)-6-(4-(difluoromethyl)-5-fluoro-6-methoxypyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-6-(4-(difluoromethoxy)-6-(difluoromethyl)pyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(2-((4aR,7aS)-2-amino-7a-(2-fluorophenyl)-4a,5,7,7a-tetrahydropyrrolo[3,4- d][l,3]thiazin-6(4H)-yl)-5-fluoro-6-methoxypyrimidin-4-yl)methanol;
(4aR,7aS)-7a-(2-fluorophenyl)-6-(6-methoxy-4-(trifluoromethyl)pyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-7a-(2-fluorophenyl)-6-(6-methoxypyridin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo [3 ,4-d] [ 1 ,3 ]thiazin-2-amine;
(4aR,7aS)-7a-(2-fluorophenyl)-6-(6-methoxy-4-(methoxymethyl)pyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-7a-(2-fluorophenyl)-6-(5-methyl-l,2,4-oxadiazol-3-yl)-4,4a,5,6,7,7a- hexahydropyrrolo [3 ,4-d] [ 1 ,3 ]thiazin-2-amine;
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(pyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(4- (trifluoromethyl)pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thi amine;
(4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-7a-(2,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(thiophen-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aR)-7a-cyclohexyl-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aR)-7a-cyclopentyl-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(tetrahydro-2H- pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
3-((4aR,7aS)-2-amino-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-7a-yl)-4-fluorobenzonitrile;
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(3- (isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexa
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluoro-5- isobutoxyphenyl)-4,4a,5 ,6,7,7a-hexahydropyrrolo [3 ,4-d] [ 1 ,3]thiazin-2-amine; (4aR,7aS)-7a-(5-amino-2-fluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5 A
(4aR,7aS)-7a-(5-(dimethylamino)-2-fiuorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-am
(4aR,7aS)-7a-(5-(l,3-difluoropropan-2-yl)amino)-2-fluorophenyl)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thi amine;
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fiuoro-5- (methylamino)phenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine; and
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fiuoro-5- (isopropylamino)phenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine, or a pharmaceutically acceptable salts thereof.
In another embodiment, the present invention provides a compound of formula (I) selected from:-
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine; and
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(pyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine,
or a pharmaceutically acceptable salt thereof.
In a further embodiment, the present invention provides the compound
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine
Figure imgf000014_0001
or a pharmaceutically acceptable salt thereof.
In a further embodiment, the present invention provides the compound
(4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine
Figure imgf000014_0002
or a pharmaceutically acceptable salt thereof.
In a further embodiment, the present invention provides the compound
(4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(pyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine
Figure imgf000015_0001
or a pharmaceutically acceptable salt thereof.
As used herein, the term "Ci_6alkyl" refers to an alkyl group having 1 to 6 carbon atoms. Examples of the group include linear and branched alkyl groups such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, t-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, 1-methylpropyl, 1 ,2-dimethylpropyl, 1-ethylpropyl, l-methyl-2- ethylpropyl, l-ethyl-2-methylpropyl, 1,1,2-trimethylpropyl, 1 -methylbutyl, 2- methylbutyl, 1,1-dimethylbutyl, 2,2-dimethylbutyl, 2-ethylbutyl, 1,3-dimethylbutyl, 2- methylpentyl and 3-methylpentyl.
As used herein, the term "C2-6alkenyl" refers to an alkenyl group having 2 to 6 carbon atoms. Examples of the group include linear and branched alkenyl groups such as vinyl, allyl, 1-propenyl, isopropenyl, 1-buten-l-yl, l-buten-2-yl, l-buten-3-yl, 2- buten-l-yl and 2-buten-2-yl.
As used herein, the term "C2-6alkynyl" refers to an alkynyl group having 2 to 6 carbon atoms. Examples of the group include linear and branched alkynyl groups such as ethynyl, 1-propynyl, 2-propynyl, butynyl, pentynyl and hexynyl.
As used herein, the term "halogen" refers to fluorine, chlorine, bromine or iodine.
As used herein, the term 'Ci_6 haloalkyl' denotes a Ci_6 alkyl group substituted with one to three halogen atoms wherein each halogen is independently selected from fluorine, chlorine, bromine and iodine. Examples of Ci_6 haloalkyl groups include CF3 (trif uoromethyl), CHF2 (difluoromethyl), CH2F (monofluoromethyl), CH2CF ,
CH2CHF2 and CH2CH2F.
As used herein, the term 'Ci_6 hydroxyalkyl' denotes a Ci_6 alkyl group substituted with one to three hydroxyl groups. Examples of Ci_6 hydroxyalkyl groups include -CH2OH (hydroxymethyl).
Examples of a "Ci_6alkoxy" group include methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy, t-butoxy, n-pentoxy, isopentoxy, sec- pentoxy, t-pentoxy, n-hexyloxy, isohexyloxy, 1,2-dimethylpropoxy, 2-ethylpropoxy, 1- methyl-2-ethylpropoxy, l-ethyl-2-methylpropoxy, 1,1,2-trimethylpropoxy, 1,1- dimethylbutoxy, 2,2-dimethylbutoxy, 2-ethylbutoxy, 1,3-dimethylbutoxy, 2- methylpentoxy, 3-methylpentoxy and hexyloxy. Examples of a "Ci_6haloalkoxy" group include -OCHF2 (difluoromethoxy).
Examples of a "Ci_6 alkylthio" group include methylthio, ethylthio, n-propylthio, isopropylthio, n-butylthio, isobutylthio, t-butylthio, n-pentylthio, isopentylthio, neopentylthio, n-hexylthio and 1-methylpropylthio.
Examples of an "amino"group optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group include amino (-NH2), methylamino (-NHMe), ethylamino (-NHEt), dimethylamino (-NMe2), diethylamino (-NEt2) and bis(2-fluoroethyl)amino (-NHCH(CH2F)2.
Examples of a "carbamoyl"group which is optionally substituted with one or two Ci_6 alkyl groups include -CONH2, -CONMe2 and -CONEt2.
Examples of a "sulfonylamino" group which is optionally substituted with one or two Ci_6 alkyl groups include methylsulfonylmethylamino (-N(Me)S02Me).
ethylsulfonylmethylamino (-N(Me)S02Et) and ethylsulfonylethylamino (-N(Et)S02Et).
Examples of an "aminosulfonyl"group which is optionally substituted with one or two Ci_6 alkyl groups include -S02NH2, -S02NMe2 and -S02NEt2.
As used herein, the term "carbocyclic" denotes ring systems having 3 to 10 ring carbon atoms, including aryl rings, non-aromatic rings such as cycloalkyl rings and partially saturated rings, monocyclic rings and fused bicyclic rings including condensed, bridged and spirocyclic rings. The term "cycloalkyl" denotes saturated carbocyclic rings having 3 to 10 carbon atoms. The term "aryl" denotes aromatic carbocyclic rings having 6 to 10 carbon atoms, including monocyclic aromatic rings and fused bicyclic rings wherein both rings are aromatic. The term carbocyclic includes fused bicyclic rings wherein one ring is non-aromatic and the other is aromatic, e.g. indanyl. Examples of "cycloalkyl" rings include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl,
cycloheptyl and cyclooctyl. Examples of "aryl" rings include phenyl and naphthyl.
As used herein, the term "heterocyclic" denotes ring systems having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur, including heteroaryl rings, non-aromatic rings such as heterocycloalkyl rings and partially saturated rings, monocyclic rings and fused bicyclic rings including condensed, bridged and spirocyclic rings. The term heterocyclic also includes fused bicyclic rings containing at least one ring heteroatom wherein one ring is non-aromatic and the other is aromatic. The term "heteroaryl" denotes aromatic rings having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur, including monocyclic aromatic rings and fused bicyclic rings wherein both rings are aromatic. The term 'heterocycloalkyl' denotes saturated rings having 5 to 10 ring atoms wherein at least one ring atom is selected from nitrogen, oxygen and sulphur. Examples of 5 to 6-membered "heteroaryl" groups include furanyl, thienyl, pyrazolyl, imidazolyl, triazolyl, oxazolyl, isooxazolyl, thiazolyl, isothiazolyl, oxadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl and triazinyl.
In the context of the present specification, where it is stated that a group is optionally substituted, the group may be substituted or unsubstituted. Moreover, where it is stated that a group is optionally substituted with at least one substituent the group may for example be unsubstituted or substituted with 1, 2 or 3 substituents.
In the present invention, although crystal polymorphs of the compound of formula (I) may be present, the compound is similarly not limited thereto and may be present as a single crystal form or a mixture of single crystal forms. The compound may be an anhydride or a hydrate. Any of these forms are included in the scope of the present invention.
The present invention also includes isotopically-labelled compounds, which are identical to the compounds of formula (I), except that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, fluorine, phosphorous, chlorine, technetium and iodine, such as 2H, 3H, nC, 14C, 13N, 150, 18F, 32P, 99mTc, 123I and 131I.
Compounds of the present invention and pharmaceutically acceptable derivatives (e.g. salts) of said compounds that contain the aforementioned isotopes and/or other isotopes of other atoms are within the scope of the present invention. Isotopically- labelled compounds of the present invention, for example those into which radioactive isotopes such as 3H and/or 14C are incorporated, may be useful in drug and/or substrate tissue distribution assays due to their ease of preparation and detectability. UC, 150 and 18F isotopes may be useful in PET (positron emission tomography), and 99mTc, 123I
131
and I isotopes may be useful in SPECT (single photon emission computerized tomography), all useful in brain imaging. Substitution with heavier isotopes such as H may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements and, hence, may be considered useful in some circumstances. Isotopically labelled compounds of formula (I) of this invention can generally be prepared by carrying out the procedures disclosed in the Schemes and/or in the Examples below, by substituting a readily available isotopically labelled reagent for a non-isotopically labelled reagent.
The isothiourea derivative of the formula (I) according to the present invention may be a pharmaceutically acceptable salt. Pharmaceutically acceptable salts include those described by Berge, Bighley and Monkhouse, J. Pharm. Sci., 1977, 66, 1-19.
Specific examples of the pharmaceutically acceptable salt include inorganic acid salts (such as sulfates, nitrates, perchlorates, phosphates, carbonates, bicarbonates, hydro fluorides, hydrochlorides, hydrobromides and hydroiodides), organic carboxylates (such as acetates, oxalates, maleates, tartrates, fumarates, citrates, malonates, lactates and hippurates), organic sulfonates (such as methanesulfonates,
trifluoromethanesulfonates, ethanesulfonates, benzenesulfonates, toluenesulfonates and camphorsulfonates), amino acid salts (such as aspartates and glutamates), quaternary amine salts, alkali metal salts (such as sodium salts and potassium salts) and alkali earth metal salts (such as magnesium salts and calcium salts).
The compound of formula (I) according to the present invention may be converted to a pharmaceutically acceptable salt by a conventional method where necessary. The salt may be prepared by a method in which methods typically used in the field of organic synthetic chemistry and the like are appropriately combined.
Specific examples of the method include neutralization titration of a free solution of the compound of the present invention with an acid solution.
The compound of formula (I) or a pharmaceutically acceptable salt thereof according to the present invention may be converted to a solvate by subjecting the compound to a solvate forming reaction known per se where necessary.
The present invention further provides a compound of formula (I) or a pharmaceutically acceptable salt thereof for use in therapy.
The isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention has an Αβ production inhibitory effect and may be useful as a prophylactic or therapeutic agent for a neurodegenerative disease caused by Αβ and typified by Alzheimer-type dementia. The compounds of the invention may reduce both Αβ40 and Αβ42. Furthermore, the compounds of the present invention may have a BACE 1 and a BACE 2 inhibitory effect.
Thus, in another aspect, the present invention provides a compound of formula
(I) as defined above, or a pharmaceutically acceptable salt thereof, for inhibiting production of amyloid-β protein.
In a further aspect, the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for inhibiting beta-site amyloid-β precursor protein cleaving enzyme 1 (BACE 1).
In a further aspect, the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating or preventing a neurodegenerative disease.
In a further aspect, the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating or preventing Alzheimer-type dementia (AD). In a further aspect, the present invention provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating Down's syndrome.
In another aspect, the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of a neurodegenerative disease.
In another aspect, the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of Alzheimer-type dementia (AD).
In another aspect, the invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment of Down's syndrome.
In another aspect, the invention provides a method of inhibiting production of amyloid-β protein involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof. "Effective amount" means an amount sufficient to cause a benefit to the subject or at least to cause a change in the subject's condition.
In another aspect, the invention provides a method of treating or preventing Alzheimer-type dementia (AD) involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
In another aspect, the invention provides a method of treating Down's syndrome involving administering to a human subject in need thereof a therapeutically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
In one aspect the present invention further provides a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for treating type 2 diabetes.
In a further aspect the present invention provides the use of a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of type 2 diabetes.
In a yet furher aspect the present invention further provides a method of treating or preventing type 2 diabetes involving administering to a human subject in need thereof a therapeutically or prophylactically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof.
A further aspect of the invention provides a pharmaceutical composition comprising a compound of formula (I) as defined above, or a pharmaceutically acceptable salt thereof, as active ingredient in association with a pharmaceutically acceptable carrier. The composition may be in any suitable form, depending on the intended method of administration. It may for example be in the form of a tablet, capsule or liquid for oral administration, or of a solution or suspension for
administration parenterally.
The isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention may be formulated by a conventional method. Preferable examples of the dosage form include tablets, coated tablets such as film tablets and sugar-coated tablets, fine granules, granules, powders, capsules, syrups, troches, inhalants, suppositories, injections, ointments, eye drops, nasal drops, ear drops, cataplasms and lotions.
These solid preparations such as tablets, capsules, granules and powders may contain generally 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the fused isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention as an active ingredient.
The active ingredient is formulated by blending ingredients generally used as materials for a pharmaceutical preparation and adding an excipient, a disintegrant, a binder, a lubricant, a colorant and a corrective typically used, and adding a stabilizer, an emulsifier, an absorbefacient, a surfactant, a pH adjuster, a preservative and an antioxidant where necessary, for example, using a conventional method. Examples of such ingredients include animal and vegetable oils such as soybean oil, beef tallow and synthetic glyceride; hydrocarbons such as liquid paraffin, squalane and solid paraffin; ester oils such as octyldodecyl myristate and isopropyl myristate; higher alcohols such as cetostearyl alcohol and behenyl alcohol; a silicone resin; silicone oil; surfactants such as polyoxyethylene fatty acid ester, sorbitan fatty acid ester, glycerol fatty acid ester, polyoxyethylene sorbitan fatty acid ester, polyoxyethylene hydrogenated castor oil and a polyoxyethylene-polyoxypropylene block copolymer; water-soluble polymers such as hydroxyethylcellulose, polyacrylic acid, a carboxyvinyl polymer, polyethylene glycol, polyvinylpyrrolidone and methylcellulose; lower alcohols such as ethanol and isopropanol; polyhydric alcohols such as glycerol, propylene glycol, dipropylene glycol and sorbitol; sugars such as glucose and sucrose; inorganic powders such as silicic anhydride, magnesium aluminum silicate and aluminum silicate; and purified water.
Examples of the excipient used include lactose, corn starch, saccharose, glucose, mannitol, sorbitol, crystalline cellulose and silicon dioxide. Examples of the binder used include polyvinyl alcohol, polyvinyl ether, methylcellulose, ethylcellulose, gum arabic, tragacanth, gelatin, shellac, hydroxypropylmethylcellulose,
hydroxypropylcellulose, polyvinylpyrrolidone, a polypropylene glycol-polyoxyethylene block copolymer and meglumine. Examples of the disintegrant used include starch, agar, gelatin powder, crystalline cellulose, calcium carbonate, sodium bicarbonate, calcium citrate, dextrin, pectin and carboxymethylcellulose calcium. Examples of the lubricant used include magnesium stearate, talc, polyethylene glycol, silica and hydrogenated vegetable oil. Examples of the colorant used include those permitted to be added to pharmaceuticals. Examples of the corrective used include cocoa powder, menthol, empasm, mentha oil, borneol and cinnamon powder. Obviously, the ingredients are not limited to the above additive ingredients.
For example, an oral preparation is prepared by adding the fused isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention as an active ingredient, an excipient and, where necessary, a binder, a disintegrant, a lubricant, a colorant, a corrective and the like, and then forming the mixture into powder, fine granules, granules, tablets, coated tablets, capsules or the like by a conventional method. Obviously, tablets or granules may be appropriately coated, for example, sugar coated, where necessary.
For example, a syrup or an injection preparation is prepared by adding a pH adjuster, a solubilizer, an isotonizing agent and the like, and a solubilizing agent, a stabilizer and the like where necessary by a conventional method. The injection may be a previously prepared solution, or may be powder itself or powder containing a suitable additive, which is dissolved before use. The injection may contain usually 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the active ingredient. Further, a liquid preparation for oral administration such as a suspension or a syrup may contain usually 0.01 to 100 wt%, and preferably 0.1 to 100 wt% of the active ingredient.
For example, an external preparation may be prepared by any conventional method without specific limitations. As a base material, any of various materials usually used for a pharmaceutical, a quasi drug, a cosmetic or the like can be used.
Examples of the base material include materials such as animal and vegetable oils, mineral oils, ester oils, waxes, higher alcohols, fatty acids, silicone oils, surfactants, phospholipids, alcohols, polyhydric alcohols, water-soluble polymers, clay minerals and purified water. A pH adjuster, an antioxidant, a chelator, a preservative and fungicide, a colorant, a flavor or the like can be added where necessary. Further, ingredients such as an ingredient having a differentiation inducing effect, a blood flow enhancer, a bactericide, an antiphlogistic, a cell activator, vitamin, amino acid, a humectant and a keratolytic agent can be blended where necessary.
The dose of the isothiourea derivative or pharmaceutically acceptable salt thereof according to the present invention may vary according to the degree of symptoms, age, sex, body weight, mode of administration, type of salt and specific type of disease, for example. Typically, the active ingredient is orally administered to an adult at about 30 μg to 10 g, preferably 100 μg to 5 g, and more preferably 100 μg to 1 g per day, or is administered to an adult by injection at about 30 μg to 1 g, preferably 100 μg to 500 mg, and more preferably 100 μg to 300 mg per day, in one or several doses, respectively. Compounds of formula (I) may be used in combination with other therapeutic agents, for example medicaments claimed to be useful as either disease modifying or symptomatic treatments of a neurodegenerative disease such as Alzheimer's disease. Thus, in a further aspect, the present invention provides a pharmaceutical product comprising, in combination, a first active ingredient which is a compound of formula (I) or a pharmaceutically acceptable salt thereof and at least one further active ingredient useful in treating a neurodegenerative disease. In one embodiment of the invention, the neurodegenerative disease is Alzheimer-type dementia (AD). Suitable examples of such further active ingredients may be symptomatic agents, for example those known to modify cholinergic transmission such as Ml and M3 muscarinic receptor agonists or allosteric modulators, M2 muscarinic antagonists, M4 agonists or positive allosteric modulators (PAMs), acetylcholinesterase inhibitors (such as tetrahydroaminoacridine, donepezil hydrochloride and rivastigmine), nicotinic receptor agonists or allosteric modulators (such as a7 agonists or allosteric modulators or α4β2 agonists or allosteric modulators), PPAR agonists (such as PPARy agonists), 5-HT4 receptor agonists or partial agonists, histamine H3 antagonists, 5-HT6 receptor antagonists or 5HTIA receptor ligands and NMD A receptor antagonists or modulators (such as memantine), 5- HT2A antagonists, 5-HT7 antagonists, Dl agonists or PAMs, D4 agonists or PAMs, D5 agonists or PAMs, GABA-A a5 inverse agonists or negative allosteric modulators (NAMs), GABA-A a2/3 agonists or PAMs, mGluR2 modulators (PAMs or NAMs), mGluR3 PAMs, mGluR5 PAMs, PDE 1 inhibitors, PDE 2 inhibitors, PDE 4 inhibitors, PDE 5 inhibitors, PDE 9 inhibitors, PDE 10 inhibitors, GlyTl inhibitors, DAAO inhibitors, ASCI inhibitors, AMPA modulators, SIRT1 activators or inhibitors, AT4 antagonists, GalRl antagonists, GalR3 ligands, adenosine Al antagonists, adenosine A2a antagonists, a2A antagonists or agonists, selective and unselective norepinephrine reuptake inhibitors (SNRIs), or potential disease modifying agents such as gamma secretase inhibitors or modulators, alpha secretase activators or modulators, amyloid aggregation inhibitors, amyloid antibodies, tau aggregation inhibitors or tau
phosphorylation/kinase inhibitors, tau dephosphorylation / phosphatase activators, mitogen-activated protein kinase kinase 4 (MKK4/MEK4/MAP2K4) inhibitors, c-Jun
N-terminal kinase (JNK) inhibitors, casein kinase inhibitors, MK2 (mitogen activated protein kinase-activated protein kinase 2) inhibitors, MARK (microtubule affinity regulating kinase) inhibitors, CDK5 (cyclin dependent kinase 5) inhibitors, GSK-3 (glycogen synthase kinase-3) inhibitors and tau-tubulin kinase-1 (TTBK1) inhibitors. Further examples of such other therapeutic agents may be calcium channel blockers, HMG-CoA (3-hydroxy-3-methyl-glutaryl-CoA) reductase inhibitors (statins) and lipid lowering agents, NGF (nerve growth factor) mimics, antioxidants, GPR3 ligands, plasmin activators, neprilysin (NEP) activators, IDE (insulin degrading enzyme) activators, melatonin MT1 and/or MT2 agonists, TLX/NR2E1 (tailless X receptor) ligands, GluRl ligands, RAGE (receptor for advanced glycation end-products) antagonists, EGFR (epidermal growth factor receptor) inhibitors, FPRL-1 (formyl peptide-like receptor- 1) ligands, GAB A antagonists, and MICAL (molecule interacting with casL) inhibitors, e.g. oxoreductase inhibitors, CB1 antagonists/inverse agonists, non-steroidal anti-inflammatory drugs (NSAIDs), anti-inflammatory agents (for example agents that could be used to treat neuroinflammation either by enhancing or reducing neuroinflammation), amyloid precursor protein (APP) ligands, anti-amyloid vaccines and / or antibodies, agents that promote or enhance amyloid efflux and / or clearance, histone deacetylase (HDAC) inhbitors, EP2 antagonists, 11 -beta HSD1 (hydroxysteroid dehydrogenase) inhibitors, liver X receptor (LXR) agonists or PAMs, lipoprotein receptor-related protein (LRP) mimics and / or ligands and/or enhancers and/or inhibitors, butyryl cholinesterase inhibitors, kynurinic acid antagonists and / or inhibitors of kynurenine aminotransferease (KAT), orphanin FQ / nociceptin (NOP) / opioid-like receptor 1 (ORL1) antagonists, excitatory amino acid transporter (EAAT) ligands (activators or inhibitors), and plasminogen activator inhibitor- 1 (PAI-1) inhibitors, niacin and /or GPR109 agonists or PAMs in combination with cholesterol lowering agents and / or HMGCoA reductase inhibitors (statins), dimebolin or similar agents, antihistamines, metal binding / chelating agents, antibiotics, growth hormone secretagogues, cholesterol lowering agents, vitamin E, cholesterol absorption inhibitors, cholesterol efflux promoters and / or activators, and insulin upregulating agents.
In one embodiment, the present invention provides a pharmaceutical product comprising, in combination, a first active ingredient which is a compound of formula (I) or a pharmaceutically acceptable salt thereof and at least one further active ingredient selected from:-
• cholinesterase inhibitors, e.g. donepezil, galantamine, rivastigamine,
tetrahydroaminoacridine and pharmaceutically acceptable salts thereof,
• NMDA receptor antagonists e.g. memantine and pharmaceutically acceptable salts thereof, and any other compounds which elicit their effects by a similar mechanism of action,
• 5-HT6 antagonists, e.g. SB-742457 and pharmaceutically acceptable salts thereof,
• HMGCoA reductase inhibitors e.g. lovastatin, rosuvastatin, atorvastatin,
simvastatin, fluvastatin, pitavastatin, pravastatin and pharmaceutically
acceptable salts thereof.
The individual components of such combinations may be administered either sequentially or simultaneously in separate or combined pharmaceutical formulations. Consequently, the pharmaceutical product may, for example be a pharmaceutical composition comprising the first and further active ingredients in admixture. Alternatively, the pharmaceutical product may for example comprise the first and further active ingredients in separate pharmaceutical preparations suitable for simultaneous, sequential or separate administration to a patient in need thereof.
The combinations referred to above may conveniently be presented for use in the form of a pharmaceutical formulation and thus pharmaceutical formulations comprising a combination as defined above together with a pharmaceutically acceptable carrier or excipient comprise a further aspect of the invention.
When a compound of formula (I) or a pharmaceutically acceptable salt thereof is used in combination with a second therapeutic agent active, the dose of each compound may differ from that when the compound is used alone. Appropriate doses will be readily appreciated by those skilled in the art.
Thus, an additional aspect of the invention provides a method of preparing a pharmaceutical composition, involving admixing at least one compound of formula (I) as defined above, or a pharmaceutically acceptable salt therof, with one or more pharmaceutically acceptable adjuvants, diluents or carriers and/or with one or more other therapeutically or prophylactically active agents.
General Preparation Methods
General Methods for preparing a compound of formula (I) or a pharmaceutically acceptable salt thereof, according to the present invention, are described herein below.
It will be appreciated by those skilled in the art that in some instances certain functional groups such as hydroxyl, carboxyl or amino groups in starting reagents or intermediate compounds may need to be protected by protecting groups. Thus the following Preparation Methods may involve at certain stages the incorporation of one or more protecting groups. The protection and deprotection of functional groups is, for example, described in 'Protective Groups in Organic Synthesis, 3rd edition, T.W.
Greene and P.G.M. Wuts, Wiley-Interscience (1999) and 'Protecting Groups', P.J. Kocienski, Georg Thieme Verlag (1994), hereby known as references 1 and 2. Many of the reaction schemes to make intermediates utilise chemistry that will be known to those skilled in the art and can be found in references such as 'Organic Chemistry', 2nd edition, J. Clayden, N. Greeves and S. Warren, Oxford University Press (2012) and
'March's Advanced Organic Chemistry', 6th edition, J. March, Wiley- VCH (2007), hereby known as references 3 and 4.
Unless otherwise stated, in the following Preparation Methods the choice of solvent for a particular reaction is not particularly limited in so far as it will not inhibit the reaction, is compatible with the reactants and will allow the starting material to be dissolved to a certain extent. Further, reaction temperatures and reaction time may be varied according to the starting material, the reagent used and the like. As will be understood by those skilled in the art, when preparing certain compounds of formula (I) it may be appropriate to modify the following Preparation Methods by alternating the sequence of reaction steps and/or incorporating additional steps to vary substituent groups on intermediate compounds. Moreover, it will also be recognised that compounds of formula (I) prepared according to the General Preparation Methods may subsequently be converted to other compounds of formula (I) using known chemistry.
In the reaction schemes accompanying the General Preparation Methods the groups equivalent to R3, R4, R5, R6, R7, R8 and R9 in formula (I) are, for simplicity and clarity, depicted as hydrogen atoms. It will be understood by those skilled in the art that analogous chemistry may be used to prepare alternate compounds of formula (I) according to the present invention wherein any one or more of R 3 to R 9 are other than hydrogen.
Abbreviations used in the General Preparation Methods and Intermediate Compound Preparation Methods include:- t-butoxycarbonyl (Boc); 1,8-
Diazabicycloundec-7-ene (DBU); dichloromethane (DCM); 2,4,-dimethoxybenzyl (DMPM); Ν,Ν-Dimethylacetamide (DMA); Ν,Ν-Dimethylformamide (DMF); N, N- diisopropylethylamine (DIPEA); 4-methoxybenzyl (MPM); N-Methyl-2-pyrrolidone (NMP); mesyl (Ms); tetrahydrofuran (THF); triethylamine (TEA); trifluoroacetic acid (TFA); triflyl (Tf); Teoc (2-trimethylsilylethyl carbamate); tosyl (Ts). A further list of abbreviations can be found in the experimental section.
General Preparation Method 1
Compounds of formula (I) according to the present invention, wherein R 1 and R 2 are defined as before, can be prepared as outlined in Scheme 1 from intermediates such as la. In Scheme 1, Pi denotes a suitable protecting group (e.g. Boc, Cbz, Teoc, 2,4,- dimethoxybenzyl (DMPM), 4-methoxybenzyl (MPM) etc.) and alkyli denotes a suitable alkyl group (e.g. a Ci_6 alkyl group such Me, Et, Pr, Bu, z'-Pr, z'-Bu or t-Bu).
Suitable conditions for the preparation of lb from la include addition of an organometallic reagent (R M) to la in a suitable solvent, such as THF, PhMe, Et20 and the like, in the presence or absence of a Lewis Acid, for example BF3OEt2. Suitable organometallic reagents include organo lithium and Grignard reagents. The reaction temperature may for example be in the range -78°C to room temperature, preferably less than 0°C. The reaction time will vary based on the reagents used but those skilled in the art will be able to monitor the progress of the reaction and thereby judge the optimal reaction time. Scheme 1
Figure imgf000026_0001
Suitable conditions to prepare lc from lb include Zn in acetic acid or mixed solvent systems which include acetic acid in addition to organic solvents that do not interfere with the reaction, for example THF. The reaction temperature may for example be in the range 0°C to solvent reflux, typically 0°C to room temperature. The reaction time may typically vary from 0.5 hours to 24 hours.
Suitable conditions to convert lc to Id include reaction with
benzoylisothiocyanate in a suitable solvent such as DCM. The reaction temperature may for example be in the range -78°C to room temperature. The reaction time may vary from 5 minutes to 24 hours.
Suitable conditions to convert Id to le include reaction with triflic anhydride in a suitable solvent, such as DCM, in the presence of a base, such as pyridine. The reaction temperature may for example be in the range -78°C to room temperature, typically -20°C to 0°C. The reaction time may vary from 5 minutes to 24 hours.
Suitable conditions to convert le to If include those described in reference 1.
Specifically when a) Pi = Boc le may be converted to If by treating with an acid e.g.
TFA or HC1 in ether or dioxane; b) when Pi = Cbz le may be converted to If by hydrogenation in the presence of a palladium catalyst in a suitable solvent; c) when Pi =
4-methoxybenzyl (MPM) or 2,4-dimethoxybenzyl (DMPM) le may be converted to If by treatment with acid and / or hydrogenation in the presence of a palladium catalyst; d) when Pi = Teoc le may be converted to If by treatment with fluoride in a suitable solvent.
Suitable conditions to convert If to lg include transition metal (e.g. Pd) catalysed coupling reactions, suitable conditions include those described by Buchwald (for example Chemical Science, 2011, 2(1), 27-50; Chemical Science, 2011, 2(1), 57- 68). Particular conditions include Pd(OAc)2 as palladium source or precatalyst, NaOt- Bu as a base, t-BuDavePhos as ligand for palladium, dioxane as solvent and reaction temperature 120°C. The reaction temperature may for example be in the range room temperature to solvent reflux, and the reaction time from 5 minutes to 1 week.
Alternatively the same transformation may be effected by treating If with a base such a triethylamine and the like in a solvent, such as acetonitrile or NMP. The reaction can be performed under microwave conditions in the range 80°C to 150°C, and reaction time from 0.5 to 24 hours.
Suitable conditions for the conversion of lg to compound (I) include treatment of lg with a base, such as DBU in a suitable solvent, such as an alkyl alcohol, such as methanol (alkyli = Me). This reaction can be performed under the same conditions as those described in Synth. Commun. 2002, 32 (2), 265-272, for example. The reaction can be performed using 1 equivalent to a large excess of base. The reaction temperature is usually room temperature to solvent reflux temperature. The reaction time is usually 0.5 to 24 hours. Alternatively the same transformation may be effected by treating lg with a base such as K2CO3 in an alcoholic solvent, such as methanol (alkyli = Me), ethanol (alkyli = Et) or 1-propanol (alkyli = Pr). The reaction can be performed using 1 equivalent to a large excess of base. The reaction temperature may for example be in the range 50°C to 100°C, and the reaction time from 0.5 to 24 hours.
General Preparation Method 2
Compounds of formula (I) according to the present invention, wherein R 1 and R 2 are as defined before, can be prepared from intermediates such as 2a. In Scheme 2, alkyli denotes a suitable alkyl group (e.g. a Ci_6 alkyl group such Me, Et, Pr, Bu, z'-Pr, i- Bu or t-Bu). Those skilled in the art will appreciate that the steps and conditions of Scheme 2 are generally analogous to those shown in Scheme 1, the principal difference
2 1
being that R is preinstalled prior to R .
Scheme 2
Figure imgf000027_0001
step 2.5 General Preparation Method 3
General Preparation Method 3 may be used to prepare compounds of formula (I) according to the present invention wherein R is a pyrimidinyl group of formula (II) as described herein above, from intermediates such as If (Scheme 3). In Scheme 3, W1 denotes a suitable alkyl group (e.g. a Ci_6 alkyl group such Me, Et, Pr, Bu, z'-Pr, z'-Bu, t-
11 12 13
Bu) or a suitable aryl group (e.g. Ph or substituted-Ph) and R , R and R are as defined herein above in formula (II).
Pyrrolidine derivative If can be prepared as described in General Preparation Method 1 and can be converted to the corresponding guanidine 3a (Step 3.1) by reaction with reagents such as 1-pyrazolecarboxamidine (lH-pyrazole-l-carboximidamide). The reaction temperature may for example be in the range 0°C to solvent reflux temperature, typically room temperature. The reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours. The reaction solvent is not limited as long as it does not interfere with the reaction. Suitable solvents include DMF, DMA, NMP and the like. Those skilled in the art will appreciate that the reaction may require a non-nucleophilic bases, for example TEA, DIPEA or diisopropylamine as 1-pyrazolecarboxamidine is generally used as a hydrochloride salt. Those skilled in the art will appreciate that alternative reagents may be used in place of 1-pyrazolecarboxamidine and that such reagents may deliver a protected guanidine analogue of 3a. Those skilled in the art will be able to select appropriate reagents and be able to effect the deprotection, if required at the appropriate stage.
Compound 3a can be condensed with either diketone derivatives 3f or with beta- ketoester derivatives 3g to give compounds such as 3b or 3c, respectively, as depicted in Step 3.2 and Step 3.4. The reaction temperature may for example be in the range 0°C to solvent reflux temperature, typically reflux. The reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours. Compounds 3f and 3g are commercially available or can be prepared by those skilled in the art.
Compounds such as 3c can be further functionalised by alkylation to give derivatives 3d under standard conditions as depicted in Step 3.5, whereby LG is a leaving group such as halogen (CI, Br, I) or OTf, OMs, OTs or the like and W is for example a Ci_6 alkyl.
Alternatively 3c may be converted to 3e (Step 3.7) wherein LG1 is a leaving group such as halogen (CI, Br, I), for example by treatment with POCI3, or LG1 is OTf, OTs or OMs. Compound 3e can then be reacted with nucleophiles (Step 3.8) to give
3b. Examples of nucleophiles include alcohols, amines and carbon nucleophiles such as boronic acids and stannanes and the like. Those skilled in the art will appreciate that when a carbon nucleophile is used then a transition metal catalyst will be required, for example a Pd catalyst.
Both compounds 3b and 3d can be deprotected (Step 3.3 and 3.6) using the same conditions as described in General Preparation Method 1, Step 1.7, to give Compound (I) wherein R2 is a pyrimidinyl group of formula (II).
Scheme 3
Figure imgf000029_0001
Intermediate Compound Preparation Methods
Intermediate compounds la, lb, lc, 2a, 2b and 2c may for example be prepared using chemistry according or analogous to that described in the following methods. Preparation of Intermediate Compound la
Intermediate la can be prepared as shown in Scheme 4. In Scheme 4, Pi and alkyli are as defined in Scheme 1; W is as defined in Scheme 3, alkyl2 is a suitable alkyl group (e.g. a Ci_6 alkyl group such Me, Et, Pr, Bu, z'-Pr, z'-Bu or t-Bu) and LG is a suitable leaving group (e.g. halogen (CI, Br, I), OTf, OMs OSu or OTs). Additionally, where there are two alkyl2 groups present in a compound these groups may form a ring.
Conditions to form the protected derivatives incorporating Pi include the use of Boc20 (where LG = C02tBu), CbzCl (where LG = CI), CbzOSu (N- benzyloxycarbonyloxysuccinimide where LG = OSu and HOSu = N- hydroxysuccinimide) and TeocCl (where LG = CI). Conditions to form these protected intermediates include those described in Reference 1. Where Pi is MPM or DMPM the protecting groups can be added as described in Reference 1, p. 581, or by reductive alkylation using 4-methoxybenzaldehyde or 2,4-dimethoxybenzaldehyde. The steps depicted in Scheme 4 involve chemistry that will be known to those skilled in the art. Further details can be found in references 3 and 4. Additional information on how certain reaction steps in Scheme 4 may conveniently be performed are provided herein below.
Compounds 4f are either comercially available or may be prepared by incorporation of a protecting group Pi as outlined above. 4f can be reacted with allyl bromide, 4e, as in Step 4.4 to give compounds such as 4d. The reaction temperature may for example be in the range -20°C to 0°C and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours. The reaction solvent is not limited as long as it does not interfere with the reaction. Suitable solvents include DMF, DMA, NMP and the like.
Compounds such as 4d can then undergo reduction to the aldehyde 4j (Step 4.7), using a suitable reagent and solvent such as DIBAL and DCM. The reaction
temperature may for example be in the range -78°C to 0°C and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
Hydroxyimine formation (Step 4.7) can then be carried out using hydroxylamine hydrochloride in a suitable alcoholic solvent. The reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours to give 4k. Cyclisation of 4k using NaOCl as in Step 4.8 affords intermediate la.
Alternatively, intermediate 4c can be prepared via a different synthetic sequence. N-alkylation of allylamine 4a with bromoacetate 4b (step 4.1) can give access to N- allylglycine derivative 4c followed by subsequent protection with PiLG (step 4.2). Suitable conditions to convert 4a to 4c can be accomplished in a suitable solvent such as diethyl ether, tetrahydrofuran, or the like. This reaction can be performed under the same conditions as those described in Carbohydrate Research 2005, 340, 2457-2468 for example. The reaction temperature may for example be in the range 0°C to room temperature, and the reaction time from lh to 1 week. Suitable conditions to convert 4c to 4d include those described in reference 1.
Aldehyde 4j may also be prepared from compound 41 which is first protected with PiLG (step 4.9). The resulting compound 4m can undergo alkylation with allyl bromide 4e to afford 4i (step 4.10), which may also be accessed from bromoacetal 4g. The acetal 4i can be converted into aldehyde 4j (step 4.10). Suitable conditions to convert 4i to 4j include those described in reference 1. Suitable conditions to convert 4m to 4i include use of base such as sodium hydride, cesium carbonate, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like. The reaction temperature may for example be in the range 0°C to room temperature, and the reaction time from lh to 1 week. Suitable conditions to convert 4i to 4j include use of acid such as formic acid, hydrogen chloride, or the like. The reaction temperature may for example be in the 0°C to room temperature, and the reaction time from lh to 1 week. Scheme 4 ρ,, ΝΗ^^ + Br\^C02W
4h 4b
base or
Step 4.3 NaOH, DCM
BU4NHSO4H
8
Figure imgf000031_0001
1a
4I 4m Preparation of Intermediate Compound lb
As an alternative to being prepared from intermediate la as described in Scheme 1, intermediate lb may be prepared as outlined in Scheme 5. In Scheme 5, Pi and alkyli are as defined for Scheme 1 and LG is a suitable leaving group, (e.g. halogen (CI, Br, I) or OTf, OTs, OMs and the like).
The steps depicted in Scheme 5 will be known to those skilled in the art. Further details can be found in references 3 and 4. General conditions for the reaction of Weinreb amides such as 5d with organometallic reagents can be found in Tetrahedron Lett. 1981, 22, 3815. Compound lb wherein Pi is DMPM can be prepared as described in WO2009019016. Additional information on how certain reaction steps in Scheme 5 may conveniently be performed are provided herein below. In one instance protected allyl amine, 4h, can be reacted with derivatives of 5a (Step 5.1), both of which are either commercially available or can be synthesised usually in one step. A suitable non-nucleophilic base, for example TEA, DIPEA or diisopropylamine, is required as well as a suitable solvent such as DCM. This reaction affords the ketone derivative 5c and the reaction temperature may for example be in the range room temperature to solvent reflux, typically room temperature and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours.
Oxime formation (Step 5.6) can then be carried out using hydroxylamine hydrochloride in a suitable alcoholic solvent, e.g. in buffered or basic consitions. The reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours to give 5h.
Figure imgf000032_0001
Cyclisation as in Step 5.7 is then achieved by heating 5h in a suitable solvent at reflux for between 1 -12 hours to give derivative lb. This route can convieniently be used when R is 2,4-difluorophenyl group (e.g. as in Example 17 of the experimental section).
Alternatively, compound 5c can be prepared from either compound 4d or commercialy available compound 5e in a three steps sequence, as depicted in Scheme 5. Scheme 5
Preparation of Intermediate 2a
Intermediate 2a, can be prepared as shown in Scheme 6. In Scheme 6, W1 is as defined for Scheme 3 and alkyl2 and LG are as defined for Scheme 4. The reactions and conditions depicted in Scheme 6 will be known to those skilled in the art. Further details can be found in references 3 and 4. Additional information on how certain reaction steps in Scheme 6 may conveniently be performed are provided herein below.
In one instance allyl amine 6b can be reacted with compounds 4g (Step 6.1). Suitable conditions include use of base such as sodium hydride, cesium carbonate, or the like in a suitable solvent such as dimethylformamide, tetrahydrofuran, or the like. The reaction temperature may for example be in the range 0°C to reflux, and the reaction time from lh to 1 week. The resulting acetal 6e could be converted into the aldehyde 6f and then to oxime 6g when treated with hydroxylamine hydrochloride in a suitable alcoholic solvent (step 6.9), e.g. in buffered conditions. The reaction
temperature may for example be in the range room temperature to solvent reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours. 1,3-Dipolar cycloaddition reaction as in Step 6.10 is then achieved by conversion of 6g to a nitrile oxide derivative which reacst with the olefin moiety in the same molecule to afford the cyclic compound 2a. Suitable conditions include the use of N-chlorosuccinimide and sodium hypochlorite in a suitable solvent such as dichloromethane, chloroform, or the like. The reaction temperature may for example be in the range 0°C to solvent reflux temperature, and the reaction time from lh to 48 hours. This reaction can be performed under analogous conditions as those described as Org. Lett. 2007, 9, 753-756,
Tetrahedron: Asymmetry 1994 5, 1019-1028 and Tetrahedron 1998, 54, 5869-5882.
Allyl amines of formula 6b may be prepared in one step from either allylamine or allylbromide following procedure as those described in Angew.Chem. Int. Ed.. 2011, 50, 5678-5681, JOC 2005, 70, 5164-5173 and Tet. Lett. 1998, 5P3131-3141. A general method of preparing compounds 6b wherein R is a pyrimidine, for example compound 9d, is described in Scheme 9. Compounds 4g are either commercially available or can be prepared by known chemistry. Scheme 6
Figure imgf000034_0001
Figure imgf000034_0002
Preparation of Intermediate 2b
As an alternative to being prepared from intermediate 2a as described in General
Preparation Method 2, intermediate 2b may be prepared as outlined in Scheme 7. In Scheme 7, alkyli is as defined for Scheme 1 and LG is as defined for Scheme 4. The reactions and conditions depicted in Scheme 7 will be known to those skilled in the art. Further details can be found in references 3 and 4. Additional information on how certain reaction steps in Scheme 7 may conveniently be performed are provided herein below.
In one instance allyl amine 6b can be reacted with derivatives of 5a (Step 7.1) Suitable conditions include use of base such as sodium hydride, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like. The reaction temperature may for example be in the range 0°C to reflux, and the reaction time from lh to 48h. The resulting ketone 7a can be converted to oxime 7b when treated with hydroxylamine hydrochloride in a suitable alcoholic solvent (step 7.2), e.g. in buffered conditions. The reaction temperature may for example be in the range room temperature to solvent reflux, typically reflux and the reaction time may vary from 5 minutes to 24 hours, typically 1 - 12 hours. This reaction can be performed under the same conditions as those described as J. Med. Chem. 2002, 45, 3794-3804 and J. Med. Chem. 2000, 43, 3808-3812. 1,3-Dipolar cycloaddition reaction as in Step 7.3 is then achieved by heating the compound 7b under reflux in a toluene solvent, for example. This reaction can be performed under analogous conditions as those described as J. Org. Chem. 1993, 58, 4538-4546 and Tetrahedron Letters, 1988 29, 5313-5316.
Alternatively, intermediate 7a can be prepared via a different synthetic sequence. N-alkylation of allylamine 6b with either 2-chloro-N-methoxy-N-methylacetamide 7c can give the Weinreb amide derivative 7d or reaction with reagent of type 5e can give morpholinoethanone compound 7e (Step 7.4), in the presence of a base such as sodium hydride, or the like in a suitable solvent such as dimethylformamide, terahydrofuran, or the like. Subsequently both compounds 7d and 7e can be converted into compound 7a when treated with a suitable organometallic reagent (Rx-M) (Step7.5).
Scheme 7
Figure imgf000035_0001
Alternate Preparations of Intermediates lb/lc and 2b/2c
Those skilled in the art will appreciate the routes depicted in Schemes 5 and 7, for the preparation of intermediates lb and 2b, can be modified by replacement of hydroxylamine by a hydroxylamine derivative containing a chiral centre. An example of a hydroxylamine derivative containing a chiral centre is N-(a- methylbenzyl)hydroxylamine. Scheme 8
Figure imgf000036_0001
PhCH(Me)NHOH
PhCH(Me)NHOH
Step 8.2
Step 8.1 Lewis Acid, solvent,
Lewis Acid, solvent, heat
heat
Figure imgf000036_0002
1 b 1 c 2b 2c
Step 1.2 Step 2.2
Reaction of ketone derivatives 5c or 7a with N-( a - methylbenzyl)hydroxylamine result in intermediate nitrones 8a and 8c respectively which may or may not be possible to isolate (Scheme 8). Intramolecular cycloaddition of these nitrones results in cyclic hydroxylamines 8b and 8d respectively. Those skilled in the art will appreciate that utilising a hydroxylamine derivative with a chiral centre results in diastereomeric products, e.g. 8b and 8d and that the diastereomers may not be formed in equal amounts, hence the selection of the chiral centre in the starting hydroxylamine derivative, e.g. N-( a -methylbenzyl)hydroxylamine, may be used not only to deliver a diastereomeric product but also to influence the diastereomeric ratio. Examples of suitable Lewis acids include Ti(OEt)4. Examples of solvents THF. The reaction temperature may be in the range room temperature to solvent reflux, typically 50°C to 100°C. The reaction time may vary from 1 hour to 1 week.
Those skilled in the art will appreciate that compounds 8b and 8d can be converted to derivatives such as lc (Schemel) and 2c (Scheme 2) respectively by reduction of the N-0 bond, for example by treatment with Zn in AcOH or
hydrogenation in the presence of a Pd catalyst, and removal of the a -methylbenzyl group, for example by hydrogenation in the presence of a Pd catalyst. Those skilled in the art will appreciate that it may be possible to reduce the N-0 bond and remove the a -methylbenzyl group in a single step if desired.
Preparation of intermediates where R is a Pyrimidinyl Group
Scheme 9 depicts several routes for preparing intermediate compounds that may be used in preparing Compounds of formula (I), wherein R is a pyrimidiyl group. In
1 12 13 1
Scheme 9, R is as defined for formula (I), R , R are as defined for formula (II), W is as defined for Scheme 3, alkyl2 is as defined for Scheme 4 and W is, for example, a Ci_
6 alkyl group. The reactions and conditions depicted in Scheme 9 will be known to those skilled in the art. Further details can be found in references 3 and 4.
Allyl amine 4a may be converted to the corresponding guanidine 9b (as described in Scheme 9) which may then be condensed with a beta-ketoester derivative 3g to give pyrimidone derivative 9c. Selective O-alkylation may be achieved to give 9d which may then undergo further alkylation to give 9e. Compound 9e may then be transformed to Compound (I) via a similar sequence to that shown in Schemes 5, 6, 7 and 8.
Similarly, the beta-ketoester derivative maybe replaced by a 1,3-diketone derivative such as 3f (Scheme 3). If 3f is used in place of 3g then similar reactions may be undertaken as those depicted in Scheme 3 and the resultant product maybe transformed to Compound (I) using similar reactions to those depicted in Schemes 5, 6,
7 and 8.
Alternative starting materials to 4a include, but are not limited to, 9a, 4c, 5b and 41 which are depicted in Scheme 9. The transformation of these starting materials may be accomplished as shown in Scheme 9 employing reaction conditions known to those skilled in the art. Compounds 9n and 9r may be transformed to Compound (I) using similar sequences to those described in Schemes 6, 7 and 8. Scheme 9
Figure imgf000038_0001
The reactions and conditions depicted in Scheme 9 will generally be familiar to those skilled in the art and further details on how to perform these reactions may be found in references 3 and 4.
Compound Examples
The present invention will be described more specifically below with reference to the following Examples. However, the present invention is not limited thereto. The abbreviations used in Examples are conventional abbreviations known to a person skilled in the art. Some abbreviations are shown below:
AIBN: Azobisisobutyronitrile; BOC & Boc: tert-butoxycarbonyl; br: broad; Bn: benzyl; Bu: butyl; BuLi: n-butyl lithium; d: doublet; DBU: 1,8- Diazabicyclo[5.4.0]undec-7-ene, DCM: dichloromethane; dd: doublet of doublets;
DIBAL: disobutylaluminium hydride; DMF (Ν,Ν-dimethylformamide); DMAP (4-N,N- dimethylaminopyridine); DMSO (dimethylsulfoxide); EDC & ED AC: (N-3(- dimethylaminopropyl)N'ethylcarbodiimide hydrochloride); Et: ethyl; Et20: diethyl ether; EtOAc: ethyl acetate; EtOH: ethanol; h, hr, hrs: hours; HCl: hydrochloric acid; HPLC: high performance liquid chromatography; LCMS, LC/MS & LC-MS: liquid chromatography / mass spectrometry; m: multiplet; Me: methyl; MeCN: acetonitrile; MeOH: methanol; MS: mass spectrometry; MDAP: mass directed auto purification; min & mins: minutes; NaOH: sodium hydroxide; NBS: N-Bromosuccinimide; NMP: N- methylpyrrolidinone or l-methyl-2-pyrrolidinone; NMR: nuclear magnetic resonance; Ph: phenyl; PhCH3 & PhMe: toluene; Pr: propyl; Rt: retention time; RT, rt & r.t.: room temperature; s: singlet; SCX: strong cation exchange:- Isolute Flash SCX-2, Biotage; t: triplet; TBAF: tetrabutylammonium fluoride; TEA: triethylamine; THF:
tetrahydrofuran; TFA: Trifluoroacetic acid; tic: thin layer chromatography; UV
(ultraviolet).
1H NMR spectra were recorded on a Bruker AM series spectrometer operating at a (reported) frequency of 400 MHz. Chemical shifts in proton nuclear magnetic resonance spectra are recorded in δ units (ppm) relative to tetramethylsilane and coupling constants (J) are recorded in Hertz (Hz).
Chemical names were generated from chemical structures using ChemBioDraw
Ultra 11.0 and 12.0 or ELN, both from Cambridgesoft.
It will be appreciated by those skilled in the art that where compounds are denoted as hydrochloride salts the exact stoichiometry has not been determined.
Therefore, designation as a mono hydrochloride salt may mean that the compound is a mono hydrochloride, a dihydrochloride, a trihydrochloride or that the stoichiometry of the hydrochloride to compound may may be anywhere from 0 - 3.
Analytical Methods
Method A
Waters UPLC -MS analytical
Al Short_5_95:
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7μΐη, 0.6mL per min, 40°C, gradient 5-95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Unless otherwise stated, this method was used for all quoted LCMS analysis.
A2 Short_20_95:
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7μΐη, 0.6mL per min, 40°C, gradient 20- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). A3 UPLC long_5_95:
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7μΐη, 0.6mL per min, 40°C, gradient 5-95% MeCN in water (0.1% formic acid) over 3.00min - held for l .OOmin). A4 UPLC long_20_95:
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7μΐη, 0.6mL per min, 40°C, gradient 20- 95% MeCN in water (0.1% formic acid) over 3.00min - held for l .OOmin). Method B
Agilent LCMS analytical
Bl FAST ANALYTICAL:
LCMS (Agilent ZORBAX Eclipse XDB-C18, 4.6 x 150mm, 5.0μΐη, 1.5mL per min, gradient 5-95% MeCN in water (0.1% formic acid) over 5.00min - held for 3.00min).
B2 TLC run No. 2:
LCMS (Agilent ZORBAX Eclipse XDB-C18, 4.6 x 150mm, 5.0μΐη, 1.5mL per min, gradient 0-100% MeCN in water (0.1% formic acid) over 2.00min - held for 2.00min). Method C
Gilson/ Thermo Finnegan analytical
CI AGILENT. GCT method (i.e. short run):
HPLC-MS (Phenomenex Gemini CI 8, 250 x 4.60mm, 5μΐη, 1.5mL per min, gradient 20-100% MeCN in water (0.1% acetic acid) over 6.00min - held for 3.00min).
C2 ORIGINAL .GCT method (i.e. long run):
HPLC-MS (Phenomenex Gemini CI 8, 250 x 4.60mm, 5μΐη, l .OmL per min, gradient 20-100% MeCN in water (0.1% acetic acid) over 15.4min - held for 7.20min).
Purification
Method D
Gilson large scale reverse phase preparatory HPLC
MANUAL2.GCT method:
reverse phase HPLC (Phenomenex Luna CI 8, 250 x 50mm, ΙΟμΐη, 80mL per min, gradient 20% to 95 % (over 25min) then 95 % ( 1 Omin) MeCN in H20 [0.1 % acetic acid]).
Method E
Agilent large scale reverse phase preparatory HPLC
PREP4.M method:
reverse phase HPLC (Phenomenex Luna CI 8, 250 x 50mm, ΙΟμΐη, 80mL per min, gradient 35% to 100% (over 20min) then 100% (5min) MeCN in H20 [0.1% acetic acid]). Method F
Waters reverse phase preparatory HPLC
Fl Buffered:
reverse phase HPLC (XBridge Prep CI 8, 19 x 150mm, 5μΐη, 20mL per min, gradient xx% to xx% (over 12min) then 95% (3min) MeCN in water [0.1% formic acid]).
F2 Non-buffered:
reverse phase HPLC (ACE 5 AQ, 21.2 x 150mm, 5μΐη, 20mL per min, gradient xx% to xx% (over 12min) then 95% (3min) MeCN in water).
Method G
Biotage Isolera
Gl purified by column chromatography (normal phase, (10g/25g/50g/100g/340g), Biotage SNAP cartridge KP-Sil, ( 12mL/25mL/5 OmL/ 1 OOmL) per min, gradient xx% to xx% EtOAc in n-hexane / MeOH in DCM). Unless otherwise stated, this method was used for all quoted silica gel chromatography purification.
G2 purified by column chromatography (normal phase, (1 lg/28g/55g/l 10g/375g), Biotage SNAP cartridge KP-NH, ( 12mL/25mL/5 OmL/ 1 OOmL) per min, gradient xx% to xx% EtOAc in n-hexane / MeOH in DCM).
Method H
Shimadzu Chiral HPLC
HI Analytical
A 5 L sample of (Sample name/number) solution (containing 1.2mg (Sample name/number) in 1.2mL DCM) was subjected to chromatographic separation on the following 4 ChiralPAK® (i.d 4.6 mm x length 250 mm) chiral columns: IA (#1), IB (#2), IC (#3), and ID (#4).
Four mobile phase isocratic conditions were examined: (DCM or 10%
DCM/hexane):EtOH (80:20/85: 15/90: 10/95:5). Oven Temp: 30°C. Flow rate: 1.0 mL/min H2 Preparative
A sample of (Sample name/number) (x mg) was dissolved in DCM (x mL), loaded into a vial (3.8 mL capacity) and subjected to chromatographic separation using preparative (column type) (i.d. 20 mm; length 250 mm) and (Solvent mixture) (v/v) as eluent. injection volume: 1500μ Flow rate: 18.0 mL/min. Oven temperature: 30°C. Collection: manual or automated
Preparation of common intermediate i-(5): tert-butyl 3a,4-dihvdro-3H-pyrrolo[3.,4- cl isoxazole-5( 6H)-carboxylate.
Figure imgf000042_0001
Preparation of methyl 2-(allyl(fert-butoxycarbonyl)amino)acetate i-(2)
To a solution of BOC-Gly-OMe i-(l ) (100 g) in N,N-dimethylformamide (900 ml) at -10°C under nitrogen was added allyl bromide (69 ml) followed by 60% sodium hydride (31.7 g). The sodium hydride was added portionwise over forty minutes and the temperature rose from -10°C to -3°C then remained at -2°C. The reaction mixture was then stirred at -2°C to around 0°C for three hours. The reaction was quenched very cautiously with aqueous saturated ammonium chloride (500 ml) diluted with water (500 ml) and extracted with ethyl acetate (1000 ml and 500 ml). The combined organic layer was washed with water (3 x 500 ml) then dried (MgSOz}) and evaporated to afford the crude title compound (132.4 g;assumed 100%) as a pale yellow oil.
1H NMR (400 MHz, CDC13) δ ppm 1.45 (d, 9 H) 3.73 (s, 3 H) 3.79 - 4.06 (m, 4 H) 5.03 - 5.27 (m, 2 H) 5.68 - 5.89 (m, 1 H)
Preparation of fert-butyl allyl(2-oxoethyl)carbamate i-(3)
To a solution of crude methyl 2-(allyl(tert-butoxycarbonyl)amino)acetate i-(2) (132.4 g) in dichloromethane (2.1 L) at -78°C was added DIBAL-H (1M in
dichloromethane; 750 ml) keeping the internal temperature below -70°C. Once the reaction appeared to be going no further by tic, the reaction mixture was quenched quickly with aqueous sodium hydroxide (2M; 1.8 L, diluted with water (2.7 L) and dichloromethane (900 ml) and the organic layer removed and washed with water/saturated aqueous sodium chloride (4.5 L). The organic layer was dried (Na2SC"4) and evaporated to afford the title compound (112.0 g) as a pale yellow oil.
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.35 - 1.55 (m, 9 H) 3.76 - 4.08 (m, 4 H) 4.97 - 5.26 (m, 2 H) 5.62 - 5.96 (m, 1 H) 9.56 (br. s., 1 H)
Preparation of tert-butyl allyl(2-(hvdroxyimino)ethyl)carbamate i-(4)
To a solution of crude tert-butyl allyl(2-oxoethyl)carbamate i-(3) (112 g) in dichloromethane (800 ml) and methanol (400 ml) was added sodium acetate (130 g) and hydroxyl amine hydrochloride (110 g) and the mixture stirred at room temperature for eighteen hours. The reaction mixture was poured into water (2000 ml), the organic layer removed and the aqueous extracted with dichloromethane (1000 ml). The combined organic layer was dried (Na2SC"4) and evaporated to afford the title compound (118.83 g) as a pale yellow oil (mixture of isomers).
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.37 - 1.56 (m, 9 H) 3.75 - 4.28 (m, 4 H) 4.97 - 5.28 (m, 2 H) 5.59 - 5.99 (m, 1 H), 6.74 & 7.38 (2 x br s, 1 H in total).
Preparation of tert-butyl 3a,4-dihvdro-3H-pyrrolor3,4-c1isoxazole-5(6H)-carboxylate i- (5)
To a solution of crude tert-butyl allyl(2-(hydroxyimino)ethyl)carbamate i-(4) (118.8 g) in dichloromethane (1200 ml) was added dropwise over sixty minutes, 15% aqueous sodium hypochlorite (450 ml). The reaction was allowed to stir for one hour. The reaction mixture was poured into water (1200 ml) and dichloromethane (400 ml) and the organic layer removed, the aqueous was extracted with dichloromethane (800 ml) and the combined organic layer washed with aqueous saturated sodium chloride. The organic layer was dried (Na2SC"4) and evaporated to afford a yellow oily solid
(113.4 g), which was then purified by silica gel column chromatography with eluant 5 to 30% ethyl acetate / hexane. The residue was stirred in hexane (300 ml) and seeded to give a crystalline solid which was refrigerated overnight then filtered off and washed with fresh cold hexane to afford the title compound (61.67 g) as a white solid.
1H NMR (400 MHz, CDC13) δ ppm 1.48 (s, 9 H) 3.05 - 3.24 (m, 1 H) 3.80 - 4.31 (m, 5
H) 4.50 - 4.73 (m, 1 H) Preparation of common intermediates ii-(3) and ii-(5): 2-chloro-5-fluoro-4- methoxy-6-methylpyrimidine and (2-chloro-5-fluoro-6-methoxypyrimidin-4- vDmethyl acetate
Figure imgf000044_0001
Preparation of 2^-dichloro-5-fluoro-6-methylpyrimidine ii-(2)
To a solution of 1.0M methylmagnesium bromide in tetrahydrofuran (270 ml) at 0°C under nitrogen was added 2,4-dichloro-5-fluoropyrimidine (30 g) in 1,2- dimethoxyethane (90 ml) dropwise maintaining the temperature below 15°C. The resulting solution was stirred at ~15°C for one hour then cooled to 0°C. A solution of triethylamine (25 ml) in dry tetrahydrofuran (40 ml) was added maintaining the temperature at ~5°C, followed by a solution of iodine (45.6 g) in dry tetrahydrofuran (140 ml) maintaining the temperature below 15°C. The reaction was quenched with water (400 ml) maintaining the temperature below 25°C and treated with 5N aqueous hydrochloric acid solution (30 ml). The mixture was extracted with diethyl ether (2 x 500 ml) and the combined organic layer was washed with 2% w/w aqueous sodium metabisulfite (400 ml) and water (400 ml) then dried (MgS04) and evaporated. The residue was purified by silica gel column chromatography (gradient from 0 to 5% ethyl acetate / hexane) to afford the title compound (16.8 g) as an orange oil which was used in the next step without further purification.
1H-NMR (400 MHz, CDC13) δ (ppm): 2.57 (d, J=2.81 Hz, 3 H)
Preparation of 2-chloro-5-fluoro-4-methoxy-6-methylpyrimidine ii-(3)
To a solution of 2,4-dichloro-5-fluoro-6-methylpyrimidine (16.8 g;crude material) in dry tetrahydrofuran (170 ml) at 0°C under nitrogen was added dropwise 25%w/w sodium methoxide in methanol (21 ml equivalent to ~5g). After ten minutes at 0°C, the reaction mixture was poured into water (500 ml) and extracted with diethyl ether (250 ml). The organic layer was washed with water then dried (MgS04) and evaporated and the residue purified by preparative HPLC. The pure fractions were combined, aqueous saturated sodium bicarbonate added and the aqueous extracted with diethyl ether. The organic layer was washed with water and then dried (MgSC"4) and carefully evaporated to afford the title compound (5.68 g) as a white crystalline solid. LCMS (Method A2): Rt 1.11 min, m/z 177/179 [M+H]+.
1H-NMR (400 MHz, CDC13) δ (ppm): 2.44 (d, J=2.93 Hz, 3 H) 4.08 (s, 3 H)
Preparation of 4-(bromomethyl)-2-chloro-5-fluoro-6-methoxypyrimidine ii-(4)
To a solution of 2-chloro-5-fluoro-4-methoxy-6-methylpyrimidine (2 g) in carbon tetrachloride (24 ml) was added AIBN (0.2 g) and NBS (6 g) and the reaction mixture stirred under reflux for twenty six hours then allowed to cool overnight. The reaction mixture was poured into cold water and extracted with dichloromethane (2 x 100 ml); the combined organic layer was washed with water and brine then dried (MgSC"4) and evaporated. The residue was triturated with diethyl ether / hexane and a white solid filtered off and the filtrate evaporated to give the title compound (2.61 g) which contained an approximately 1 :3 mixture of 4-(bromomethyl)-2-chloro-5-fluoro-6- methoxypyrimidine : 2-chloro-5-fluoro-4-methoxy-6-methylpyrimidine.
Preparation of (2-chloro-5-fluoro-6-methoxypyrimidin-4-yl)methyl acetate ii-(5)
A 1 :3 mixture of 4-(bromomethyl)-2-chloro-5-fluoro-6-methoxypyrimidine : 2- chloro-5-fluoro-4-methoxy-6-methylpyrimidine (2.61 g) was dissolved in dry acetonitrile (10 ml) and sodium acetate (0.3 g) added. The reaction mixture was heated at 90°C for seventeen hours then the reaction mixture was cooled and poured into cold water and extracted with dichloromethane (100 ml). The organic layer was dried (MgSC"4) and evaporated and the residue was purified by silica gel column
chromatography (gradient from 0 to 10% ethyl acetate / hexane) to afford the title compound (0.455 g) as an oil.
LCMS: Rt 1.34 min, m/z 235 [M+H]+.
As reported in WO 2009/131975, page 182.
Example 1: f±)-f4aR*,7aS*)-6-f5-Fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-f2- fluorophenyl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine l-(9)
Figure imgf000046_0001
1-0) 1 -(8)
i-(4) Synthesis of tert-butyl allyl(2-(hydroxyimino)ethyl)carbamate
To tert-butyl allyl(2-oxoethyl)carbamate i-(3) (41.62 g, synthesized according to the procedure of S. Schleich & G. Helmchen, Eur. J. Org. Chem, 1999, 2515, and used without purification, purity approx. 75%) in ethanol (400 mL) and water (100 mL) was added hydroxylamine hydrochloride (13.87 g) followed by sodium acetate (20.81 g) and the reaction mixture was allowed to stir at room temperature for 20 h. Water (200 mL) and brine (200 mL) were then added, and the mixture was extracted with ethyl acetate (2 x 300 mL). The combined organic portions were dried over MgS04 and evaporated to afford i-(4) (44.6 g, approx. purity 75%). 1H-NMR (400 MHz, CDC13) δ (ppm): 1.48 (s, 9 H), 3.71 - 4.25 (m, 4 H), 5.08 - 5.23 (m, 2 H), 5.70 - 5.86 (m, 1 H), 6.75 & 7.40 (2 x br s, 1 H in total). i-(5) Synthesis of fert-butyl 3a,4-dihvdro-3H-pyrrolor3,4-c1isoxazole-5(6H)- carboxylate
To a refluxing solution of tert-butyl allyl(2-(hydroxyimino)ethyl)carbamate, i-(4), (40.01 g, approx purity 75%) in dichloromethane (700 mL) was added sodium hypochlorite (100 mL, 15% available chlorine solution in water) dropwise over 2 h. The reaction mixture was stirred at reflux for 18 h, and then a further 50 mL of the above sodium hypochlorite solution was added dropwise over 15 mins. After stirring at reflux for a further 7 h, the mixture was cooled and water (200 mL) was added, followed by sodium bisulfite (100 g). The biphasic mixture was stirred vigorously for 30 min, the layers separated and the aqueous layer further extracted with dichloromethane (2 x 200 mL). The combined organic portions were then concentrated and the residue was purified by silica gel column chromatography (gradient from 0% to 25% EtOAc in
Hexanes) to obtain the title compound (20.51 g). 1H-NMR (400 MHz, CDC13) δ (ppm): 1.49 (s, 9 H), 3.08 - 3.22 (m, 1 H), 3.84 - 4.25 (m, 5 H), 4.56 - 4.68 (m, 1 H).
1-(1) Synthesis of (±)- (3aR*,6aS*)-tert-butyl 6a-(2-fluorophenyl)tetrahydro-lH- pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
A solution of l-bromo-2-fluorobenzene (20.9 mL) in THF (50 mL) and toluene (250 mL) was cooled to -78°C. n-Butyl lithium (121 mL, 1.6N in hexanes) was then added dropwise over 18 min keeping the internal temperature below -75°C. After stirring for lh at -78°C, boron trifluoride etherate (24.2 mL, 191.288 mmol) was added dropwise over 5 min keeping the internal temperature below -75°C. tert-butyl 3a,4- dihydro-3H-pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, i-(5), (20.3 g) was then added dropwise over 15 min as a solution in 100 mL THF, keeping the internal temperature below -72°C. After stirring at -78°C for a further 3h, the reaction was quenched by the addition of sat. aq. NH4CI (200 mL) and allowed to warm slowly to room temperature and stir overnight. Brine (200 mL) was then added and the mixture was extracted with
EtOAc (3 x 400 mL). The combined organic portions were dried over MgS04, evaporated, and purified by silica gel column chromatography (gradient from 0% to 25% EtOAc in Hexanes) to obtain the title compound (9.37 g).
1H-NMR (400 MHz, CDC13) δ (ppm): 1.49 (s, 9 H) 3.26 - 3.39 (m, 1 H) 3.53 - 3.83 (m, 5 H), 4.45 (t, J=8.4 Hz, 1 H) 7.08 (ddd, J=11.8, 8.1, 1.1 Hz, 1 H) 7.17 (td, J=7.6, 1.2 Hz, 1 H) 7.25 - 7.35 (m, 1 H) 7.88 (t, J=7.4 Hz, 1 H) l-(2) Synthesis of (±W3S*.4R*Vtert-butyl 3-amino-3-(2-fluorophenylV4- (hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a solution of (±)-(3aR*,6aS*)-tert-butyl 6a-(2-fluorophenyl)tetrahydro-lH- pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate, obtained in preparation example 1-(1), (9.37 g) in acetic acid (80 mL) was added zinc powder (5 g) portionwise over 5 mins. The reaction mixture was stirred at room temperature for 18 h and then filtered through celite, washing with EtOAc (400 mL). The mixture was then evaporated and NaHC03 (sat., aq., 100 mL) was added carefully. The mixture was then extracted with EtOAc (3 x 200 mL), dried over MgS04, and evaporated. The residue was purified by silica gel column chromatography (gradient from 0% to 5% MeOH in EtOAc:DCM 1 : 1) to obtain the title compound (7.24 g).
1H-NMR (400 MHz, CDC13) δ ppm 1.49 (s, 9 H), 2.19 (br s, 3 H) 2.78 - 2.88 (m, 1 H) 3.46 - 3.69 (m, 3 H) 3.85 (d, J=4.8 Hz, 2 H) 3.88 - 4.04 (m, 1 H) 7.11 (ddd, J=12.6, 8.2, 1.2 Hz, 1 H) 7.18 (td, J=7.6, 1.2 Hz, 1 H) 7.29 - 7.36 (m, 1 H) 7.47 (td, J=8.1, 1.5 Hz, 1 H). l-(3) Synthesis of (±W3S*.4R*ytert-butyl 3-(3-benzoylthioureido -3-(2-fluorophenvn- 4-(hvdroxymethyl)p yrrolidine- 1 -carboxylate
(±)-(3S*,4R*)-tert-Butyl 3-amino-3-(2-fiuorophenyl)-4- (hydroxymethyl)pyrrolidine-l -carboxylate, obtained in preparation example l-(2), (7.24 g) was dissolved in DCM (100 mL) and benzoyl isothiocyanate (4.0 mL) was added dropwise over 10 min. After stirring for 18 h, the reaction mixture was concentrated to ca. 20 mL and purified by silica gel column chromatography (gradient from 0% to 50% EtOAc in hexanes) to obtain the title compound (8.72 g).
1H-NMR (400 MHz, CDC13) δ ppm 1.51 (s, 9 H) 3.04 - 3.15 (m, 1 H) 3.38 - 3.59 (m, 2
H) 3.86 - 3.95 (m, 1 H) 4.01 - 4.21 (m, 2 H) 4.52 - 4.65 (m, 1 H) 7.06 (dd, J=11.9, 8.6 Hz, 1 H) 7.11 - 7.22 (m, 1 H) 7.22 - 7.38 (m, 1 H) 7.53 (t, J=7.6 Hz, 3 H) 7.64 (t, J=7.5 Hz, 1 H) 7.80 - 7.91 (m, 2 H), 8.86 (s, 1 H), 11.76 - 11.90 (m, 1 H). l-(4 Synthesis of (± -(4aR*,7aS* -tert-butyl 2-benzamido-7a-(2-fluorophenvn-
4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
(±)-(3 S * ,4R*)-tert-Butyl 3 -(3 -benzoylthioureido)-3 -(2-fluorophenyl)-4- (hydroxymethyl)pyrrolidine-l -carboxylate, obtained in preparation example l-(3), (8.72 g) was dissolved in DCM (70 mL) and pyridine (7.0 mL) was added. After cooling to - 10°C, triflic anhydride (5.0 mL) was added dropwise over 30 min, and the reaction mixture was allowed to stir at -10°C for 2 hours. NaHC03 (sat. aq., 100 mL) was then added cautiously and the mixture was extracted with DCM (2 x 150 mL). The combined organic portions were dried over MgS04, concentrated, and purified by silica gel column chromatography (gradient from 0% to 40% EtOAc in hexanes) to obtain the title compound (5.76 g).
1H-NMR (400 MHz, CDC13) δ ppm 1.49 (s, 9 H), 2.84 - 2.99 (m, 1 H) 3.05 - 3.17 (m, 1 H) 3.38 - 3.49 (m, 1 H) 3.67 - 3.88 (m, 3 H) 4.06 - 4.23 (m, 1 H) 7.11 - 7.59 (m, 7 H) 8.14 - 8.28 (m, 2 H). l-(5) Synthesis of (± -N-((4aR";,7aSi|; -7a-(2-fluorophenvn-4,4a,5,6JJa- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
(±)-(4aR*,7aS*)-tert-Butyl 2-benzamido-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate, obtained in preparation example l-(4), (5.40 g) was dissolved in DCM (20 mL) and trifluoroacetic acid (10 mL) was added. The reaction mixture was stirred at room temperature for 2 h, concentrated, and NaHC03 (sat. aq., 50 mL) was added. The mixture was then extracted with EtOAc (3 x 75 mL). The combined organic portions were dried over MgS04 and concentrated to afford the title compound (5.18 g, purity approx. 90%).
1H-NMR (400 MHz, CDC13) δ ppm 2.83 (dd, J=13.7, 3.5 Hz, 1 H) 3.07 (dd, J=13.7, 3.3 Hz, 1 H) 3.34 - 3.51 (m, 2 H) 3.54 - 3.70 (m, 2 H) 4.02 (d, J=11.2 Hz, 1 H) 7.09 - 7.16 (m, 1 H) 7.17 - 7.23 (m, 1 H) 7.28 - 7.41 (m, 2 H) 7.46 (t, J=7.5 Hz, 2 H) 7.56 (t, J=7.3 Hz, 1 H) 8.01 (d, J=7.5 Hz, 2 H) l-(6) Synthesis of (±)-N-((4aR*,7aS*)-6-carbamimidoyl-7a-(2-fluorophenvn- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride salt (±)-N-((4aR*,7aS!i:)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide, obtained in preparation example l-(5), (2.66 g) was dissolved in DMF (20 mL). lH-Pyrazole-l-carboxamidine hydrochloride (1.12 g) was added followed by diisopropylamine (1.12 mL) dropwise. The reaction mixture was stirred for 3 h at room temperature and concentrated. Diethyl ether (100 mL) was added and the mixture was stirred vigorously overnight. The supernatant was poured off, and the tacky solid was dissolved in DCM (50 mL). Hexane (100 mL) was added, and the mixture was concentrated to ca. 100 mL. The mixture was then filtered to afford the title compound as a white powder (3.16g, purity approx. 90%>).
1H-NMR (400 MHz, CDC13) δ ppm 2.81 (dd, J=13.8, 3.6 Hz, 1 H) 2.94 - 3.04 (m, 1 H) 3.31 - 3.53 (m, 2 H) 3.86 (d, J=9.4 Hz, 2 H) 4.28 (d, J=10.4 Hz, 1 H) 7.03 - 7.49 (m, 7 H) 8.02 (d, J=7.2 Hz, 2 H). l-(7) Synthesis of (±)-N-((4aR*,7aS*)-6-(5-fluoro-4-hvdroxy-6-methylpyrimidin-2-vn-
7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide (±)-N-((4aR*,7aS!i:)-6-Carbamimidoyl-7a-(2-fluorophenyl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride salt, obtained in preparation example l-(6), (3.12 g) was dissolved in ethanol (30 mL) and ethyl 2- fluoroacetate (0.95 mL) was added, followed by sodium ethoxide (4.78 g of a 21% w/w solution in ethanol). The reaction mixture was heated to 60°C and stirred for 1 h. The mixture was then diluted with brine (50 mL) and extracted with EtOAc (2 x 75 mL). The combined organic portions were dried over MgS04, concentrated, and purified by silica gel column chromatography (gradient from 0% to 60% EtOAc in DCM) to obtain the title compound (1.88 g).
1H-NMR (400 MHz, CDC13) δ ppm 2.19 (d, J=3.4 Hz, 3 H) 2.90 - 3.00 (m, 1 H) 3.13 (dd, J=13.5, 3.5 Hz, 1 H) 3.48 - 3.59 (m, 1 H) 3.85 - 4.03 (m, 3 H) 4.32 (d, J=l 1.5 Hz, 1 H) 7.08 - 7.25 (m, 2 H) 7.34 - 7.47 (m, 4 H) 7.48 - 7.55 (m, 1 H) 8.09 (d, J=6.5 Hz, 2 H) l-(8 Synthesis of (± -N-((4aR*,7aS* -6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-vn- 7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
(±)-N-((4aR* ,7aS *)-6-(5 -Fluoro-4-hydroxy-6-methylpyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide obtained in preparation example l-(7) (650 mg) was dissolved in DMF (3 mL) and potassium carbonate (280 mg) was added, followed by the dropwise addition of methyl iodide (192 mg) as a solution in DMF (2 mL). After stirring at room temperature for 1 h, water (50 mL) was added and the mixture was extracted with EtOAc (3 x 50 mL). The combined organic portions were dried over MgS04, concentrated, and purified by silica gel column chromatography (gradient from 15% to 20% EtOAc in hexanes) to obtain the title compound (497 mg).
1H-NMR (400 MHz, CDC13) δ ppm 2.29 (d, J=2.8 Hz, 3 H) 2.98 (d, J=12.8 Hz, 1 H) 3.11 - 3.25 (m, 1 H) 3.48 - 3.64 (m, 1 H) 3.91 - 4.06 (m, 3 H), 3.97 (s, 3 H), 4.31 (d, J=12.0 Hz, 1 H) 7.10 - 7.25 (m, 2 H) 7.33 - 7.55 (m, 5 H) 8.11 - 8.25 (m, 2 H) l-(9) Synthesis of (±)-(4aR*,7aS*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-
(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-din,31thiazin-2-amine (Example u
(±)-N-((4aR* ,7aS *)-6-(5 -Fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, obtained in preparation example l-(8), (960 mg) was dissolved in methanol (10 mL) and l,8-diazabicycloundec-7-ene (1.0 mL) was added. The reaction mixture was heated to reflux and stirred for 90 min, concentrated, and purified by silica gel column chromatography (Method G2, gradient from 0% to 30% EtOAc in hexanes) to obtain the title compound (690 mg).
1H-NMR (400 MHz, CDC13) δ ppm 2.29 (d, J=2.9 Hz, 3 H) 2.94 (dd, J=13.0, 5.2 Hz, 1 H) 3.02 (dd, J=13.0, 4.0 Hz, 1 H) 3.14 - 3.23 (m, 1 H) 3.69 - 3.79 (m, 2 H) 3.81 (dd, J=11.2, 2.4 Hz, 1 H) 3.95 (s, 3H) 4.34 (d, J=l l .l Hz, 1 H) 4.42 (br. s., 2 H) 7.05 (ddd, J=12.6, 8.1, 1.1 Hz, 1 H) 7.09 - 7.15 (m, 1 H) 7.23 - 7.30 (m, 1 H) 7.32 - 7.38 (m, 1 H).
Example 2: f±)-f4aR*,7aS*)-6-f5-fluoro-4-methoxypyrimidin-2-yl)-7a-f2- fluorophenyl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000051_0001
2-(2)
2-(l) Synthesis of (±)-N-((4aR*,7aS*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yn- 7a-(2-fluorophenyl)-4,4a,5,6,7 ,7a-hexahydropyrrolo[3,4-dl[l,31thiazin-2-yl)benzamide (alternative route) and synthesis of (±)-N-((4aR*,7aS*)-6-(5-fluoro-4- methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7 ,7a-hexahydropyrrolo[3,4- d] [ 1 ,31thiazin-2-yl)benzamide
To a solution of (±)-N-((4aR*,7aS *)-7a-(2-fluorophenyl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, obtained in preparation example
1- (5), (231 mg) in degassed 1,4-dioxane (2 mL), was added 2-chloro-5-fluoro-4- methoxy-6-methylpyrimidine, as obtained in preparation ii-(3), (173 mg, approx. purity 75%, remainder 2-chloro-5-fluoro-4-methoxypyrimidine), diacetoxypalladium (15 mg),
2- Di-t-butylphosphino-2'-(N,N-dimethylamino)biphenyl (23 mg) and sodium tert- butoxide (94 mg). The reaction mixture was irradiated in a microwave reactor for 20mins at 125°C with cooling. The reaction mixture was then cooled, diluted with water, and extracted with EtOAc (3 x 40 mL). The combined organic portions were dried over MgSC"4, evaporated, and purified by silica gel column chromatography silica, gradient from 0% to 20% EtOAc in hexanes) to obtain firstly (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide l-(9), (32 mg), data as above, and secondly (±)-N-((4aR*,7aS*)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 2-(l), (12 mg).
1H-NMR (400 MHz, CDC13) δ ppm 3.00 (dd, J=13.7, 4.3 Hz, 1 H) 3.19 (dd, J=13.6, 3.9 Hz, 1 H) 3.52 - 3.62 (m., 1 H) 3.92 - 4.08 (m, 6 H), 4.34 (d, J=12.0 Hz, 1 H) 7.11 - 7.28 (m, 2 H) 7.35 - 7.60 (m, 5 H) 7.98 (d, J=3.1 Hz, 1 H) 8.17 (d, J=6.8 Hz, 2 H)
2-(2) Synthesis of (±)- (4aR* ,7aS *)-6-(5 -fluoro-4-methoxyp yrimidin-2-yl -7a-(2-
Figure imgf000052_0001
(Example 2)
To a solution of (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-7a- (2-fiuorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (12 mg) in methanol (1 ml) was added l,8-diazabicycloundec-7-ene (15 mg). The reaction mixture was heated to reflux and stirred for 2 h, concentrated, and purified by silica gel column chromatography (Method G2, gradient from 0% to 40% EtOAc in hexanes) to obtain the title compound (7.6 mg).
1H-NMR (400 MHz, CDC13) δ ppm 2.93 - 3.02 (m, 1 H) 3.02 - 3.12 (m, 1 H) 3.20 -
3.32 (m, 1 H) 3.73 - 4.10 (m, 6 H), 4.36 (d, J=l 1.2 Hz, 1 H) 7.08 (dd, J=12.6, 8.1 Hz, 1 H) 7.12 - 7.21 (m, 1 H) 7.25 - 7.44 (m, 2 H) 7.98 (d, J=3.2 Hz, 1 H).
Example 3 : (±)-(4aR*.,7aS*)-6-( 5-fluoro-4-methoxy-6-( trifluoromethvDpyrimidin- 2-yl)-7a-(2-fluorophenyl)-4,4a,5,6J,7a-hexahvdropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine
Figure imgf000052_0002
3-(l) Synthesis of ethyl 2,4 A4-tetrafluoro-3-oxobutanoate
To a solution of ethyltrifluoroacetate (13.4 g) in dry tetrahydrofuran (25 mL) was added 60% sodium hydride (1.89 g) and the mixture heated to 50°C. Ethyl fluoroacetate (5 g) was then added dropwise over fifteen minutes and the reaction mixture stirred at 50°C for two hours, then cooled and poured into ice (25 g)/concentrated sulfuric acid (2.5 mL). The aqueous layer was extracted with ethyl acetate (100 mL) and the organic layer washed with water (50 mL) and aqueous saturated sodium chloride (50 mL) then dried (Na2S04) and evaporated. The residue was dissolved in dichloromethane, applied to a 340 g SNAP KP-Si column and purified on the Biotage Isolera 4 eluting with 5 to 35% ethyl acetate / hexane over 10 column volumes to afford the title compound (6.2 g) as a pale yellow oil.
1H NMR (400 MHz, CDC13) δ ppm 1.38 (t, 3 H) 4.41 (q, J=7.09 Hz, 2 H) 5.06 (d, 1 H).
3 -(2) Synthesis of (± -N-((4aR*,7aS'|; -6-(5-fluoro-6-oxo-4-(trifluoromethvn-L6- dihvdropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
To a solution of (±)-N-((4aR*,7aS!i:)-6-carbamimidoyl-7a-(2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride, prepared as described in preparation example l-(6), (0.402 g) in ethanol (5 mL) was added ethyl 2,4,4,4-tetrafluoro-3-oxobutanoate (0.7 g) followed by sodium ethoxide
(1.2 mL, 21% in ethanol) and the mixture refluxed for four hours. The reaction mixture was diluted with ethyl acetate (50 mL), washed with aqueous saturated sodium bicarbonate solution (25 mL) and water (25 mL) then dried (MgS04) and
evaporated.The residue was dissolved in dichloromethane and applied to a 25g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 100% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.195 g) as an off- white solid.
LCMS: Rt 1.66 min, m/z 536 [M+H]+. 3-(3 Synthesis of (± -N-((4aR*,7aS'|; -6-(5-fluoro-4-methoxy-6-
(trifluoromethyl)pyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
To a solution of (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-6-oxo-4-(trifluoromethyl)-l,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.186 g) in N,N-dimethylformamide (2 mL) was added potassium carbonate (0.072 g) followed by a solution of methyl iodide (0.02 mL) in N,N-dimethylformamide (2 mL) and the mixture stirred at room temperature for ninety minutes. The reaction mixture was diluted with ethyl acetate (50 mL), washed with water (2 x 25 mL) then dried (MgS04) and evaporated. The residue was dissolved in dichloromethane and applied to a 10 g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.06 g) as a white solid.
LCMS: Rt 1.95 min, m/z 550 [M+H]+.
3 -(4) Synthesis of (± >(4aR* JaS * 6-(5 -fluoro-4-methoxy-6- (trifluoromethyl)pyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-amine (Example 3)
To a solution of (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6-
(trifluoromethyl)pyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.056 g) in methanol (0.5 mL) was added DBU (0.05 mL) and the reaction mixture stirred at 80°C for three hours then cooled and diluted with ethyl acetate (40 mL). The organic layer was washed with water (3 x 20 mL) then dried (MgS04) and evaporated. The residue was purified by SCX (1 g) to afford the title compound (0.041 g) as a white solid.
LCMS: Rt 1.36 min, m/z 446 [M+H]+.
1H NMR (400 MHz, DMSO-d6) δ ppm 2.79 - 2.95 (m, 1 H) 2.98 - 3.23 (m, 2 H) 3.79 (m, 3 H) 3.91 - 4.18 (m, 4 H) 6.15 (br. s., 2 H) 7.1 1 - 7.29 (m, 2 H) 7.36 (dd, J=7.70, 4.28 Hz, 2 H).
Example 4: f±)-f4aR*,7aS*)-6-f5-fluoro-4-ffluoromethyl)-6-methoxypyrimidin-2- yl)-7a-f2-fluorophenyl)-4,4a,5.,6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000054_0001
4-(l) Synthesis of ethyl 2,4-difluoro-3-oxobutanoate
To a mixture of 60% sodium hydride (1.89 g) in dry diethyl ether (100 ml) at room temperature was added dropwise ethyl fluoroacetate (10 g) and then the reaction mixture stirred at 40°C for four hours then cooled and poured into ice (25
g)/concentrated sulfuric acid (2.5 ml). The aqueous layer was extracted with diethyl ether (2 x 100 ml) and the combined organic layer dried (MgS04) and evaporated. The residue was purified by silica gel column chromatography (gradient from 10 to 30% ethyl acetate / hexane) to afford the title compound (3.8 g) as a very pale yellow oil. 1H-NMR (400 MHz, DMSO-d6) δ (ppm): 1.24 (t, 3 H) 4.24 (q, 2 H) 5.32 (d, J=46.34 Hz, 2 H) 5.94 (d, J=46.09 Hz, 1 H).
4-(2) Synthesis of rac-N-( (4aR* .7aS * V6-( 5 - fluoro-4-( fluoromethylV6-oxo - 1.6- dihvdropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
To a mixture of rac-N-((4aR*,7aS!i:)-6-carbamimidoyl-7a-(2-fiuorophenyl)-
4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride, prepared as described in preparation example l-(6), (assumed 0.305 g) in ethanol (5 ml) was added ethyl 2,4-difluoro-3-oxobutanoate (0.26 g) followed by sodium ethoxide (0.525ml, 21% in ethanol) and the mixture refluxed for one hour. The reaction mixture was diluted with ethyl acetate (50 ml), washed with aqueous saturated sodium bicarbonate solution (25 ml) and water (25ml) then dried (MgSC"4) and evaporated. The residue was purified by silica gel column chromatography (gradient from 0 to 100% ethyl acetate / hexane) to afford the title compound (0.24 g) as a pale yellow solid. LCMS: Rt 1.45 min, m/z 500 [M+H]+.
4-(3) Synthesis of rac-2-((4aR'|;,7aS'|;)-2-amino-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahvdropwolor3,4-diri,31thiazin-6(4H)-yl)-5-fluoro-6-(fluoromethyl)pyrimidin-
4(3HVone
To a solution of rac-N-((4aR*,7aS!i:)-6-(5-fluoro-4-(fluoromethyl)-6-oxo-l,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.23 g) in methanol (4 ml) was added potassium carbonate (0.127 g) and the mixture heated at 60°C for three hours then cooled, loaded onto an SCX column (10 g) and purified to afford the title compound (0.157 g) as a pale yellow solid.
LCMS: Rt 0.88 min, m/z 396 [M+H]+. 4-(4) Synthesis of rac-(4aR* ,7aS *)-6-(5 -fluoro-4-(fluoromethyl)-6-methoxypyrimidin- 2-yl)-7a-(2-fluorophenyl)-4,4a,5,6 ,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-amine (Example 4)
To a solution of rac-2-((4aR*,7aS*)-2-amino-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazin-6(4H)-yl)-5-fluoro-6-(fluoromethyl)pyrimidin- 4(3H)-one (0.15 g) in N'N-dimethylformamide (2 ml) was added potassium carbonate (0.105 g) followed by a solution of methyl iodide (0.03 ml) in N,N- dimethylformamide(2 ml) and the mixture stirred at room temperature for two hours then diluted with ethyl acetate (40 ml). The organic layer was washed with water (3 x 30ml) then dried (MgSC"4) and evaporated. The residue was purified by preparative
HPLC and isolated by SCX (5 g) to afford the title compound (0.092 g) as a white foam. LCMS: Rt 1.15 min, m/z 410 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.80 - 2.93 (m, 1 H) 2.98 - 3.16 (m, 2 H) 3.51 - 3.82 (m, 3 H) 3.87 - 4.01 (m, 3 H) 4.02 - 4.15 (m, 1 H) 5.20 - 5.31 (m, 1 H) 5.33 - 5.47 (m, 1 H) 6.11 (s, 2 H) 7.13 - 7.27 (m, 2 H) 7.29 - 7.44 (m, 2 H)
Example 5 : ( ±)-( 4aR*,7aS*)-6-( 4-( difluorometh yl)-6-methoxypyrimidin-2-yl)-7a- fl-fluorophenvD^^a^^^ a-hexahvdropyrroloiS^-dl il^lthiazin-l-amine
Figure imgf000056_0001
5-(2) Synthesis of (± -N-((4aR";,7aSi|; -6-(4-(difiuoromethvn-6-oxo-l,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6 ,7,7a-hexahydropyrrolo[3,4- d] [ 1 ,31thiazin-2-yl)benzamide
Obtained as a pale yellow solid (0.39 g) following an analogous procedure to that used to prepare compound l-(7) as described in Example 1, starting from (±)-N- ((4aR*,7aS!i:)-6-carbamimidoyl-7a-(2-fiuorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride (0.61 g), prepared as described in preparation example l-(6), and ethyl 4,4-difluoro-3-oxobutanoate (0.52 g)
LCMS: Rt 1.50 min, m/z 500[M+H]+.
5-(3) Synthesis of (± -N-((4aR*,7aS* -6-(4-(difluoromethvn-6-methoxypyrimidin-2- yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
Starting from (±)-N-((4aR*,7aS!i:)-6-(4-(difluoromethyl)-6-oxo-l,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.1 g), obtained in example 5-(2), the title compound (0.076g) was synthesised following an analogous procedure to that used to prepare compound l-(8) as described in Example 1.
LCMS: Rt 1.86 min, m/z 514 [M+H]+.
5 -(4) Synthesis of (±)-(4aR*,7aS*)-6-(4-(difluoromethvn-6-methoxypyrimidin-2-vn- 7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-din,31thiazin-2-amine (Example 5)
Starting from (±)-N-((4aR* ,7aS *)-6-(4-(difluoromethyl)-6-methoxypyrimidin-2- yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide (0.07 g), obtained in example 5-(3), the title compound (0.056 g) was synthesized following an analogous procedure to that used to prepare compound l-(9) as described in Example 1.
LCMS: Rt 1.19 min, m/z 410 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.77 - 2.96 (m, 1 H) 2.97 - 3.21 (m, 2 H) 3.54 - 3.98 (m, 6 H) 4.02 - 4.20 (m, 1 H) 6.12 (br. s., 2 H) 6.25 (s, 1 H) 6.44 - 6.85 (m, 1 H) 7.13 - 7.27 (m, 2 H) 7.28 - 7.44 (m, 2 H)
Example 6: f±)-f4aR*,7aS*)-6-f4-fdifluoromethyl)-5-fluoro-6-methoxypyrimidin-2- yl)-7a-f2-fluorophenyl)-4,4a,5.,6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000057_0001
6-( 1 ) Synthesis of ethyl 2 A4-trifluoro-3 -oxobutanoate
To a solution of ethyl 2,2-difluoroacetate (11.7 g) in dry tetrahydrofuran (25 ml) was added 60% sodium hydride (1.89 g) and the mixture heated to 50°C. Ethyl fluoroacetate (5 g) was then added dropwise over fifteen minutes and the reaction mixture stirred at 50°C for two hours, then cooled and poured into ice (25
g)/concentrated sulfuric acid (2.5 ml). The aqueous layer was extracted with ethyl acetate (100 ml) and the organic layer washed with water (50 ml) and aqueous saturated sodium chloride (50 ml) then dried (Na2SC"4) and evaporated. The residue was purified by silica gel column chromatography (gradient from 5 to 40% ethyl acetate / hexane) to afford the title compound (9 g) as a colourless oil.
6-(2) Synthesis of (± -N-((4aR*,7aS'|; -6-(4-(difiuoromethvn-5-fluoro-6-oxo-l ,6- dihvdropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
Starting from (±)-N-((4aR* ,7aS *)-6-carbamimidoyl-7a-(2-fluorophenyl)-
4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride (0.61 g), prepared as described in preparation example l-(6), and ethyl 2,4,4-trifluoro-3- oxobutanoate (0.6 g) the title compound (0.5 g) was synthesised following an analogous procedure to that used to prepare compound l-(7) as described in Example 1.
LCMS: Rt 1.55 min, m/z 518 [M+H]+.
6-(3) Synthesis of (±)- N-((4aR";JaSi|; -6-(4-(difluoromethvn-5-fluoro-6- methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
Starting from (±)-N-((4aR* ,7aS *)-6-(4-(difhioromethyl)-5 -fluoro-6-oxo- 1 ,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.1 g), obtained in example 6-(2), the title compound (0.054 g) was synthesised following an analogous procedure to that used to prepare compound l-(8) as described in Example 1.
LCMS: Rt 1.86 min, m/z 532 [M+H]+.
6-(4) Synthesis of (±y(4aR^7aS*V6-(4-(difluoromethyiy5-fluoro-6- methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- diri,31thiazin-2-amine (Example 6)
Starting from (±)- N-((4aR*,7aS!i:)-6-(4-(difluoromethyl)-5-fluoro-6- methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.047 g), obtained in example 6-(3), the title compound (0.031 g) was synthesised following an analogous procedure to that used to prepare compound l-(9) as described in Example 1.
LCMS: Rt 1.18 min, m/z 428 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.79 - 2.94 (m, 1 H) 2.96 - 3.21 (m, 2 H) 3.50 - 3.85 (m, 3 H) 3.87 - 4.23 (m, 4 H) 6.13 (br. s., 2 H) 6.67 - 7.09 (m, 1 H) 7.12 - 7.29 (m, 2 H) 7.30 - 7.45 (m, 2 H)
Example 7: (±)-(4aR*,7aS*)-6-(4-(difluoromethoxy)-6-(difluoromethyl)pyrimidin-
2-yl)-7a-(2-fluorophenyl)-4,4a,5,6J,7a-hexahvdropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine
Figure imgf000059_0001
7-(l) Synthesis of rac-2-((4aR*,7aS*)-2-amino-7a-(2-fluorophenvn-4a,5,7,7a- tetrahydropyrrolor3,4-din ,31thiazin-6(4H)-yl)-6-(difluoromethyl)pyrimidin-4(3H)-one
To a solution of rac-N-((4aR*,7aS!i:)-6-(4-(difiuoromethyl)-6-oxo-l,6- dihydropyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.17 g), obtained in example 5-(2), in methanol (4 ml) was added potassium carbonate (0.094g) and the mixture heated at 60°C for three hours then cooled, loaded onto an SCX column (5 g) and purified to afford the title compound (0.126g) as a white solid.
LCMS: Rt 0.94 min, m/z 396 [M+H]+.
7-(2) Synthesis of rac-( 4aR* JaS *>6-(4-( difluoromethoxy -6- (difluoromethyl)pyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-amine (Example 7)
To a suspension of rac-2-((4aR*,7aS*)-2-amino-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazin-6(4H)-yl)-6-(difluoromethyl)pyrimidin-4(3H)-one
(0.12 g), obtained in example 7-(l), in acetonitrile (3 ml) was added sodium carbonate (0.064 g) followed by 2-(fluorosulfonyl)difluoroacetic acid (0.038 ml) and the mixture stirred at room temperature for fifteen minutes then 2-(fluorosulfonyl)difluoroacetic acid (0.038 ml) added and stirred at room temperature for a further fifteen minutes. The reaction mixture was loaded onto an SCX column (5 g) and partially purified, then purified by preparative HPLC and isolated by SCX (5 g) to afford the title compound
(0.028 g) as a white solid.
LCMS: Rt 1.24 min, m/z 446 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.80 - 2.96 (m, 1 H) 2.99 - 3.11 (m, 1 H) 3.11 - 3.22 (m, 1 H) 3.63 (t, J=10.33 Hz, 1 H) 3.71 - 3.88 (m, 2 H) 4.06 - 4.19 (m, 1 H) 6.15 (br. s, 2 H) 6.50 (d, J=3.18 Hz, 1 H) 6.73 (td, J=54.41, 11.25 Hz, 1 H) 7.15 - 7.29 (m, 2 H) 7.31 - 7.44 (m, 2 H) 7.85 (td, J=72.01, 4.77 Hz, 1 H)
Example 8: (±)- -«4a^7aS*)-2-amino-7a-q-fluorophenyl)-4a,5,7Ja- tetrahvdropyrrolo[3.l4-dl [l.l31thiazin-6f4H)-yl)-5-fluoro-6-methoxypyrimidin-4- vDmethanol
Figure imgf000060_0001
8-0) 8-(2) Synthesis of rac-(2-((4aR*,7aS*)-2-benzamido-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahvdropyrrolor3,4-diri ,31thiazin-6(4H)-yl)-5-fluoro-6-methoxypyrimidin-4- vDmethyl acetate
A mixture of rac-N-((4aR*,7aS!i:)-7a-(2-fluorophenyl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.53 g) obtained in example 1- (5), (2-chloro-5-fluoro-6-methoxypyrimidin-4-yl)methyl acetate (0.455g) obtained in example ii-(5), 2-di-t-butylphosphino-2'-(N,N-dimethylamino)biphenyl (0.028 g), palladium (II) acetate (0.017 g) and sodium tert-butoxide (0.315 g) in anhydrous toluene (5ml) was stirred at 100°C for twenty hours. The reaction mixture was diluted with ethyl acetate (100 ml) and washed with water (2 x 20 ml) then dried (MgS04) and evaporated to a brown foam (0.85 g) that contained rac-(2-((4aR*,7aS*)-2-benzamido- 7a-(2-fluorophenyl)-4a,5,7,7a-tetrahydrop
6-methoxypyrimidin-4-yl)methyl acetate and rac-N-((4aR*,7aS*)-6-(5-fluoro-4- (hydroxymethyl)-6-methoxypyrimidm^
hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide and was used in the next step with purification.
LCMS: Rt 1.79 min, m/z 554 [M+H]+.
LCMS: Rt 1.64 min, m/z 512 [M+H]+.
8-(3) Synthesis of rac-(2-((4aR*,7aS*)-2-amino-7a-(2-fluorophenvn-4a,5,7,7a- tetrahydropyrrolor3,4-din ,31thiazin-6(4H)-yl)-5-fluoro-6-methoxypyrimidin-4- vDmethanol (Example 8)
A mixture of rac-(2-((4aR*,7aS!i:)-2-benzamido-7a-(2-fluorophenyl)-4a,5,7,7a- tetrahydropyrrolo [3 ,4-d] [ 1 ,3 ]thiazin-6(4H)-yl)-5 -fluoro-6-methoxypyrimidin-4- yl)methyl acetate, rac-N-((4aR*,7aS*)-6-(5-fluoro-4-(hydroxymethyl)-6- methoxypyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (crude material; 0.85 g) and potassium carbonate (0.62 g) in methanol (10 ml) was heated at 60°C for three hours. Allowed to cool and the reaction mixture loaded onto an SCX column (20 g) to afford partial purification. The residue was purified by preparative HPLC and isolated by SCX (5 g) and trituration from diethyl ether to afford the title compound (0.13 g) as a white solid.
LCMS: Rt 1.03 min, m/z 408 [M+H]+.
1H-NMR (400 MHz, MeOD) δ (ppm): 3.05 - 3.26 (m, 2 H) 3.27 - 3.35 (m, 1 H) 3.78 (t, J=6.85 Hz, 2 H) 3.91 - 4.09 (m, 4 H) 4.32 - 4.47 (m, 1 H) 4.56 (d, J=2.20 Hz, 2 H) 7.10 - 7.27 (m, 2 H) 7.30 - 7.46 (m, 2 H)
Example 9: f±)-f4aR*,7aS*)-7a-f2-fluorophenyl)-6-f6-methoxy-4- ftrifluoromethyl)pyridin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2- amine
Figure imgf000061_0001
9-( 1 Synthesis of rac-(4aR^7aS*V7a-(2-fluorophenyr)-4,4a,5.6.7.7a- hexahydropyrrolor3,4-diri,31thiazin-2-amine
To a solution of rac-N-((4aR*,7aS*)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l ,3]thiazin-2-yl)benzamide (0.3 g) obtained in l-(5) in methanol (6 ml) was added potassium carbonate (0.23 g) and the mixture heated at 60°C for three hours, cooled and the reaction mixture loaded onto an SCX column (10 g) and purified to afford the title compound (0.218 g) as a white foam.
9-(2) Synthesis of 2-chloro-6-methoxy-4-(trifluoromethyl)pyridine
To a solution of 2,6-dichloro-4-(trifluoromethyl)pyridine (2.0 g) in dry methanol
(40 ml) was added a solution of sodium hydroxide (1.85 g) in dry methanol (7ml) and the reaction mixture stirred at 50°C under nitrogen for two hours then allowed to cool. The reaction mixture was extracted with pentane (2 x 100 ml), and the extract combined and evaporated to afford the title compound (1.69 g) as a colourless oil.
LCMS: Rt 1.75 min, m/z 212/214 [M+H]+.
1H-NMR (400 MHz, CDC13) δ (ppm): 4.00 (s, 3 H) 6.89 (s, 1 H) 7.12 (s, 1 H)
9-(3) Synthesis of rac-(4aR*,7aS*)-7a-(2-fluorophenyl)-6-(6-methoxy-4- (trifluoromethyl)pyridin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- amine (Example 9)
A mixture of rac-(4aR*,7aS*)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l ,3]thiazin-2-amine (0.1 g), 2-chloro-6-methoxy-4- (trifluoromethyl)pyridine (0.17 g) and triethylamine (0.083 ml) in anhydrous acetonitrile (1 ml) was stirred at 120°C for thirty minutes under microwave conditions. The reaction mixture was evaporated, purified by preparative HPLC and isolated by
SCX (10 g) to afford the title compound (0.031 g) as a pale pink solid.
LCMS: Rt 1.31 min, m/z 427 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.88 (dd, J=13.20, 3.91 Hz, 1 H) 3.03 (dd, J=13.20, 4.40 Hz, 1 H) 3.07 - 3.20 (m, 1 H) 3.41 - 3.79 (m, 3 H) 3.84 (s, 3 H) 4.03 - 4.20 (m, 1 H) 6.00 - 6.28 (m, 4 H) 7.14 - 7.28 (m, 2 H) 7.30 - 7.44 (m, 2 H) Example 10: ( ±)-( 4aR*,7aS*)-7a-( 2-fluorophenyl)-6-( 6-methoxypyridin-2-yl)-
4,4a,5,6,7 a-hexahydropyrrolo[3,4-dl [ly31thiazin-2-amine
Figure imgf000063_0001
Starting from rac-(4aR*,7aS*)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine (0.08 g), obtained in example 9-(l), and 2-chloro-6-methoxypyridine (0.091 g), rac-(4aR*,7aS*)-7a-(2-fluorophenyl)-6-(6- methoxypyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine (0.01 g) was synthesised following an analogous procedure to that used to prepare compound 9-(3) as described in Example 9.
LCMS: Rt 1.19 min, m/z 359 [M+H]+.
1H-NMR (600 MHz, DMSO-d6) δ (ppm): 2.82 - 2.95 (m, 1 H) 2.97 - 3.12 (m, 2 H) 3.45 - 3.69 (m, 3 H) 3.77 (s, 3 H) 4.02 - 4.07 (m, 1 H) 5.88 - 5.98 (m, 2 H) 6.07 (br. s, 2 H) 7.14 - 7.41 (m, 5 H)
Example 11: f±)-f4aR*,7aS*)-7a-f2-fluorophenyl)-6-f6-methoxy-4- fmethoxymethyl)pyridin-2-yl)-4,4a,5.,6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2- amine
Figure imgf000063_0002
11-(1) Synthesis of 2-chloro-6-methoxy-4-(methoxymethyl)pyridine
To a solution of 2-chloro-6-methoxyisonicotinic acid (2.5 g) in dry
tetrahydrofuran (50 ml) at 0°C under nitrogen was added dropwise a solution of borane- tetrahydrofuran complex (1.0M solution in tetrahydrofuran; 40 ml) over fifteen minutes. After the addition was complete, the cooling bath was removed and the mixture allowed to warm to room temperature. After three hours, the mixture was cooled to 0°C and borane-tetrahydrofuran complex (1.0M solution in tetrahydrofuran; 40 ml) was added over fifteen minutes. After the addition was complete, the cooling bath was removed and the mixture allowed to warm to room temperature and stirred for seventeen hours. The reaction mixture was cooled to 0°C, quenched with 1.0M aqueous sodium hydroxide solution (30 ml), diluted with saturated aqueous ammonium chloride solution (50 ml) and extracted with diethyl ether (2 x 100 ml), the combined organic layer washed with brine then dried (Na2SC"4) and evaporated. The residue was triturated with hexane and filtered to afford (2-chloro-6-methoxypyridin-4-yl)methanol (2.0 g) as a white solid.
LCMS: Rt 1.16 min, m/z 174/176 [M+H]+.
1H-NMR (400 MHz, CDC13) δ (ppm): 1.96 (t, 1 H) 3.94 (s, 3 H) 4.67 (d, J=3.67 Hz, 2 H) 6.65 (d, J=0.86 Hz, 1 H) 6.91 (s, 1 H)
To a solution of (2-chloro-6-methoxypyridin-4-yl)methanol (0.25 g) in dry DMF (1.25 ml) at room temperature was added potassium carbonate (0.6 g) and methyl iodide (0.18 ml) and the reaction mixture stirred overnight. The reaction mixture was diluted with ethyl acetate (25 ml) and washed with water (3 x 10 ml) then dried (Na2SC"4) and evaporated. The residue was purified by silica gel column chromatography (gradient from 0 to 20% ethyl acetate / hexane) to afford the title compound (0.112 g) as a colourless oil.
LCMS: Rt 1.52 min, m/z 188/190 [M+H]+.
11 -(2) Synthesis of rac-(4aR*,7aS*)-7a-(2-fluorophenyl)-6-(6-methoxypyridin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-dl[l,31thiazin-2-amine (Example 11)
A mixture of rac-(4aR*,7aS!i:)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-amine (0.1 g) obtained in 9-(l), 2-chloro-6-methoxy-4- (methoxymethyl)pyridine (0.11 g) and triethylamine (0.083 ml) in anhydrous NMP (1 ml) was stirred at 120°C for thirty minutes under microwave conditions. The reaction mixture was diluted with DMF (1 ml) and partially purified by preparative HPLC. The residue was then purified by silica gel column chromatography (Method G2, gradient from 0% to 50% ethyl acetate / hexane) to afford the title compound (0.014 g) as a white solid.
LCMS: Rt 1.13 min, m/z 402 [M+H]+.
1H-NMR (600 MHz, DMSO-d6) δ (ppm): 2.88 (d, J=12.32 Hz, 1 H) 2.95 - 3.13 (m, 2 H) 3.28 (s, 3 H) 3.44 - 3.70 (m, 3 H) 3.76 (s, 3 H) 3.97 - 4.13 (m, 1 H) 4.29 (s, 2 H) 5.88 (s, 2 H) 6.05 (br. s., 2 H) 7.13 - 7.26 (m, 2 H) 7.29 - 7.41 (m, 2 H) Example 12: (±)-(4aR*,7aS*)-7a- -fluorophenyl)-6-(5-methyl-l,2,4-oxadiazol-3- yl)-4,4a,5,6 ,7a-hexahvdropyrrolo[3,4-dl [lv31thiazin-2-amine
Figure imgf000065_0001
12-(4) 12-(3)
12-(1) Synthesis of rac-N-((4aR*,7aS * -6-cvano-7a-(2-fluorophenvn-4,4a,5.6.7.7a- hexahydropyrrolo[3,4-dl[l,31thiazin-2-yl)benzamide
To a solution of rac-N-((4aR*,7aS*)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.2 g), obtained in l-(5), in dichloromethane (1 ml) at 0°C was added DIPEA (0.11 ml) and cyanogen bromide (0.066 g) and the reaction stirred for thirty minutes. The reaction mixture was diluted with ethyl acetate (40 ml) and washed with water (2 x 20 ml) then dried MgSC"4 and evaporated to afford the title compound (0.22 g) as a pale yellow foam.
LCMS: Rt 1.48 min, m/z 381 [M+H]+.
12-(2) Synthesis of rac-N-(Y4aR* JaS ί|; -7a-(2-fίuorophenvn-6-((E -N,- hydroxycarbamimidoyl)-4,4a,5,6,7 a-hexahydropyrrolo[3,4-dl[l,31thiazin-2- yPbenzamide
To a solution of rac-N-((4aR*,7aS*)-6-cyano-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.214 g) in ethanol (2 ml) was added triethylamine (0.083 ml) and hydroxylamine hydrochloride (0.041 g) and the reaction mixture stirred at 80°C for thirty minutes, then evaporated to dryness and used crude in the next step.
LCMS: Rt 1.12 min, m/z 414 [M+H]+.
12-(3) Synthesis of rac-N-((4aR*,7aS'|; -7a-(2-fluorophenvn-6-(5-methyl-l,2,4- oxadiazol-3-yl)-4,4a,5,6 J ,7a-hexahydropyrrolo[3,4-dl[l,31thiazin-2-yl)benzamide
To a solution of rac-N-((4aR*,7aS!i:)-7a-(2-fluorophenyl)-6-((E)-N'- hydroxycarbamimidoyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide (crude mixture) in pyridine (2 ml) was added acetic anhydride (0.06 ml) and the reaction mixture stirred at 80°C for two hours. The reaction mixture was evaporated to dryness and the residue was purified by silica gel column chromatography (gradient from 0 to 50% ethyl acetate / hexane) to afford the title compound (0.039 g) as a white foam.
LCMS: Rt 1.53 min, m/z 438 [M+H]+.
12-(4) Synthesis of rac-(4aR* aS*)-7a-(2-fluorophenyl)-6-(5-methyl-l ,2,4-oxadiazol- 3-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-amine (Example 12)
To a solution of rac-N-((4aR*,7aS!i:)-7a-(2-fluorophenyl)-6-(5-methyl-l ,2,4- oxadiazol-3-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.035 g) in methanol (0.5 ml) was added potassium carbonate (0.022 g) and the mixture heated at 60°C for four and a half hours, cooled and the reaction mixture loaded onto an SCX column (1 g) and purified to afford the title compound (0.024 g) as a white solid.
LCMS: Rt 0.91 min, m/z 334 [M+H]+.
1H-NMR (400 MHz, DMSO-d6) δ (ppm): 2.43 (s, 3 H) 2.77 - 2.92 (m, 1 H) 2.95 - 3.12 (m, 2 H) 3.41 - 3.62 (m, 3 H) 4.00 (d, J=9.78 Hz, 1 H) 6.12 (s, 2 H) 7.10 - 7.25 (m, 2 H) 7.29 - 7.42 (m, 2 H)
Example 13: f±)-f4aR*,7aR*)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fpyridin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000067_0001
13-(7) 13-(8) 13-(9)
13-(1) Synthesis of (±)-(3aR*,6aR*Vtert-butyl 6a-(pyridin-2-vntetrahvdro-lH- pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
2-bromopyridine (0.674 ml, 7.067 mmol) was dissolved in THF (5mL) at RT under N2 before the resultant solution was cooled to -78°C. After reaching this temperature n-BuLi (2.83 ml, 7.067 mmol) was added and the resultant solution stirred for 30 minutes. After this time tert-butyl 3a,4-dihydro-3H-pyrrolo[3,4-c]isoxazole- 5(6H)-carboxylate, i-(5), (1 g, 4.712 mmol) as a solution in THF (2 mL), which had previously been cooled to -78°C, was added dropwise. After 30 minutes there was no isoxazole starting material remaining and so the reaction was quenched with sat. NH4C1 (aq) and the reaction mixture allowed to warm to room temperature. EtOAc was added and the layers separated, the aqueous was washed a further two times with EtOAc. The organics were combined, dried over MgS04, filtered and solvent removed in vacuo to give crude material as a brown oil. This was purified by column chromatography (normal phase, 50g, Biotage SNAP cartridge KP-Sil, 50mL per min, 100% EtOAc) to give afford the title compound (547 mg, 1.877 mmol, 39.8 % yield) as a yellow foam. 1H NMR (400 MHz, CDCl3-< ) δ ppm 1.48 (s, 9 H) 3.61 - 3.74 (m, 2 H) 3.83 - 3.95 (m, 2 H) 3.97 - 4.07 (m, 1 H) 4.43 - 4.60 (m, 2 H) 7.78 - 7.88 (m, 1 H) 8.38 (td, J=7.80, 1.47 Hz, 1 H) 8.49 (br. d, J=8.40 Hz, 1 H) 8.86 (dd, J=5.75, 1.10 Hz, 1 H). 13-(2) Synthesis of (±)-(3R*,4R*)-tert-butyl 3-amino-4-(hvdroxymethyl)-3-(pyridin-2- vDpyrrolidine- 1 -carboxylate
(±)-(3aR*,6aR*)-tert-butyl 6a-(pyridin-2-yl)tetrahydro-lH-pyrrolo[3,4- c]isoxazole-5(3H)-carboxylate, 13-(1), (1.422 g, 4.881 mmol) was dissolved in THF (35 ml, 427.151 mmol) before acetic acid (2.79 ml, 48.808 mmol) was added at RT under nitrogen. Zinc dust (2.81 g, 42.951 mmol) was then added and the resultant solution stirred at RT overnight. Reaction mixture was filtered through celite and washed with EtOAc before solvent was removed in vacuo. The residue was redissolved in EtOAc and washed with sat. NaHC03 (aq). The solution was again filtered through celite to remove the salts before the layers were separated and the aqueous extracted with EtOAc (x2). The organic fractions were combined, dried over MgS04, filtered and solvent removed in vacuo to afford the title compound (1.243 g, 4.11 mmol, 84 % yield) as a yellow foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 0.90min, ES+: 294.60 [MH]+.
13-(3) Synthesis of (±W3R*.4R*>tert-butyl 3-(3-benzoylthioureido -4- (hvdroxymethyl)-3-(pyridin-2-yl)pyrrolidine- 1 -carboxylate
To a solution of (±)-(3R*,4R*)-tert-butyl 3-amino-4-(hydroxymethyl)-3- (pyridin-2-yl)pyrrolidine-l -carboxylate, 13-(2), (1.206 g, 4.111 mmol) in
dichloromethane (20 ml) at -15°C was added a solution of benzoyl isothiocyanate (0.553 ml, 4.111 mmol) in dichloromethane (6.0 ml) and the reaction mixture stirred at - 15°C for ninety minutes. Solvent was removed in vacuo and the residue redissolved in dichloromethane and applied to a 20g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 100% ethyl acetate / hexane over 10CV + 5% methanol / ethyl acetate over 10CV toafford the title compound (1.427 g, 3.13 mmol, 76 % yield) as a yellow foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.44min, ES+: 457.61 [MH]+.
13 -(4) Synthesis of (±)-(4aR*,7aR*)-tert-butyl 2-benzamido-7a-(pyridin-2-yl)- 4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate To a solution (±)-(3R*,4R*)-tert-butyl 3-(3-benzoylthioureido)-4- (hydroxymethyl)-3-(pyridin-2-yl)pyrrolidine-l-carboxylate, 13-(3), (46 mg, .101 mmol) in DCM (1.601 mL, 24.882 mmol) and pyridine (0.033 mL, .403 mmol) at -40 °C was added dropwise Trifluoromethanesulphonic acid anhydride (0.047 mL, .277 mmol) and the reaction mixture stirred for 1 h at this temperature. The reaction mixture was quenched with sat. NaHC03 (aq) at -40°C before the reaction mixture was allowed to warm to RT. The layers were separated and the aqueous further extracted with DCM (x2). The combined organics were then washed with brine before being dried over MgSC"4, filtered and solvent removed in vacuo to afford the title compound (44 mg, 0.100 mmol, 100 % yield) as a yellow oil.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.60min, ES+: 439.63 [MH]+. 13-(5 Synthesis of (±)-N-((4aR^7aR*V7a-(pyridin-2-viy4,4a,5,6,7,7a- hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
A solution of (±)-(4aR*,7aR*)-tert-butyl 2-benzamido-7a-(pyridin-2-yl)-
4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate, 13-(4), (202 mg, .461 mmol) in DCM (0.8 mL, 12.433 mmol) and TFA (0.4 mL, 5.192 mmol) was stirred at room temperature for two hours. The reaction mixture was evaporated to dryness and the residue was purified by SCX (lOg) to afford the title compound (66 mg,
0.195 mmol, 42.3 %> yield) as a brown solid.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.01 min, 100%, ES+: 339.57 [MH]+.
13 -(6) Synthesis of f--:)-N-((4aR'|;,7aR'|;)-6-carbamimidoyl-7a-(pyridin-2-yl)- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
To a solution of (±)-N-((4aR*,7aR!i:)-7a-(pyridin-2-yl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 13-(5), (66 mg, .195 mmol) in
DMF (ImL, 12.915 mmol) was added IH-pyrazole-l-carboximidamide hydrochloride (38.6 mg, .263 mmol) followed by N-ethyl-N-isopropylpropan-2-amine (0.051 mL, .293 mmol) added dropwise and the reaction mixture stirred at room temperature overnight. The reaction mixture was concentrated in vacuo and material used crude in next step. LCMS (Acquity UPLC C 18, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.01 min, 100%, ES+: 381.58 [MH]+. 13 -(7) Synthesis of (±)-N-(Y4aR* ,7aR*)-6-(5 -fluoro-4-hvdroxy-6-methylpyrimidin-2- yl)-7a-(pyridin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-din ,31thiazin-2-yl)benzamide
Assumed 100% on the previous step (based on 0.194 mmol): To a solution of (±)-N-((4aR*,7aR!i:)-6-carbamimidoyl-7a-(pyridin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride, 13-(6), (81 mg, .194 mmol) in EtOH (1792 μΐ, 30.696 mmol) was added Ethyl 2-fluoroacetoacetate (48.7 μΐ, .389 mmol), then sodium ethoxide (33.5 μΐ, .427 mmol) (21% w/w solution in EtOH). The reaction was stirred at reflux for 1 h. The reaction mixture was diluted with EtOAc and sat. NaHC03 (aq), and H20 (to avoid emulsion). The two layers were separated and the aqueous phase extracted with EtOAc (x2), the combined organic extracts was washed with brine, dried over Na2S04 and concentrated under reduced pressure. The residue was purified by column chromatography (normal phase, lOg, Biotage SNAP cartridge KP-Sil, 12mL per min, gradient 0% to 100% EtOAc in n- hexane over 20 CV then 5CV at 100%) to afford the title compound (33 mg, 0.071 mmol, 36.6 %> yield) as a beige solid.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.21 min, ES+: 465.62 [MH]+.
13-(8) Synthesis of (±)-N-((4aR* ,7aR*)-6-(5 -fluoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(pyridin-2-yl)-4,4a,5,6 ,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide To a solution of (±)-N-((4aR*,7aR!i:)-6-(5-fiuoro-4-hydroxy-6-methylpyrimidin- 2-yl)-7a-(pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide, 13-(7), (33 mg, .071 mmol) in N,N-dimethylformamide(l ml) was added K2C03 (19.64 mg, .142 mmol) followed by methyl iodide (4 μΐ) and the mixture stirred at room temperature for 90 minutes. Reaction mixture was quenched with sat. NH4C1
(aq) then diluted with ethyl acetate and water. The layers were separated and the aqueous further extracted with EtOAC (x2). The organic layers were combined, dried (MgS04), filtered and solvent removed in vacuo to give crude material as a yellow oil. This was was purified by column chromatography (normal phase, lOg, Biotage SNAP cartridge KP-Sil, 12mL per min, gradient 0% to 100% EtOAc in n-hexane over 30CV) to afford the title compound (22 mg, 0.046 mmol, 64.7 %> yield) as a white solid.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.64min, 100%, ES+: 479.64 [MH]+.
13-(9) Synthesis of f±)-(4aR'|;,7aR'|;)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-
2-yl)-7a-(pyridin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2-amine
(±)-N-((4aR*,7aR!i:)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- (pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 13- (8), (22 mg, .046 mmol) was dissolved in MeOH (1 ml, 24.718 mmol) at RT under nitrogen before K2CO3 (12.71 mg, .092 mmol) was added and the resultant solution heated to 60 °C for 3 h. Solution was loaded on to a SCX (1 g) cartridge, impurities eluted with MeOH before the product was washed off using 2M NH3/MeOH. Solvent was removed in vacuo to afford the title compound (16 mg, 0.043 mmol, 93 % yield) as a beige solid.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.09 min, 100%, ES+: 375.57 [MH]+.
1H NMR (600 MHz, DMSO- 6) δ ppm 2.22 (d, J=16.73 Hz, 3 H) 2.51 - 2.53 (m, 1 H) 2.84 - 3.02 (m, 2 H) 3.58 - 3.66 (m, 1 H) 3.67 - 3.75 (m, 1 H) 3.77 - 3.81 (m, 1 H) 3.90 (d, J=42.26 Hz, 3 H) 3.98 - 4.07 (m, 1 H) 6.04 (br. s, 2 H) 7.28 (ddd, J=7.63, 4.70, 1.17 Hz, 1 H) 7.43 (d, J=7.92 Hz, 1 H) 7.81 (td, J=7.92, 1.76 Hz, 1 H) 8.56 (d, J=4.99 Hz, 1 H).
Example 14: f4aR,7aR)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fpyridin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000071_0001
14-(13) 14-(12) 14-(11) 14-(1) Synthesis of 2-chloro-l-morpholinoethanone
To a solution of chloroacetyl chloride (25 ml) in dry dichloromethane (125 ml) at -10°C was added dropwise a solution of morpholine (30 ml) and triethylamine (47.5 ml) in dry dichloromethane (125 ml) over approximately two hours keeping the internal temperature below 20°C. After addition, the reaction mixture was stirred for one hour then the reaction mixture was washed with 0.5N aqueous hydrochloric acid (200 ml) and water (2 x 200 ml). The combined aqueous was back extracted with
dichloromethane (2 x 150 ml); the organic layers were combined, dried (MgS04) and evaporated to afford the title compound (46.69 g) as a brown oil.
1H-NMR (400 MHz, CDC13) δ (ppm): 3.49 - 3.57 (m, 2 H) 3.58 - 3.66 (m, 2 H) 3.71 (dt, J=9.84, 4.86 Hz, 4 H) 4.06 (s, 2 H)
14-(2) Synthesis of 2-(allylamino)- 1-morpholinoethanone
To a solution of 2-chloro-l-morpholinoethanone (10 g) in dry acetonitrile (400 ml) at 0°C under nitrogen was added potassium carbonate (67 g) followed by allylamine (23 ml) and the reaction mixture stirred for approximately four hours. The reaction mixture was filtered then evaporated to afford the title compound (11.6 g) as an orange oily solid which was used in the next step without purification.
14-(3) Synthesis of tert-butyl allyl(2-morpholino-2-oxoethyl)carbamate
To a solution of 2-(allylamino)- 1 -morpholinoethanone (11.24 g) in dry 1 ,4- dioxane (200 ml) at 0°C under nitrogen was added triethylamine (17 ml) followed by BOC2O (14 g), the ice bath removed and the reaction mixture stirred for one hour. The reaction mixture was diluted with dichloromethane (200 ml) and washed with water
(200 ml) and the organic layer dried (MgSC"4) and evaporated. The residue was purified by silica gel column chromatography (gradient from 0% to 100% ethyl acetate / hexane) to afford the title compound (11.84 g) as a very pale yellow oil.
1H-NMR (400 MHz, CDC13) δ (ppm): 1.46 (s, 9 H) 3.30 - 3.79 (m, 8 H) 3.85 - 4.10 (m, 4 H) 5.14 (d, J=11.00 Hz, 2 H) 5.69 - 5.92 (m, 1 H)
14-(4) Synthesis of tert-butyl allyl(2-oxo-2-(pyridin-2-yl)ethyl)carbamate
To a solution of 2-bromopyridine (5.5 g) in dry tetrahydrofuran (55 ml) at - 78°C under nitrogen was added dropwise butyl lithium (17.5 ml;1.6N in hexanes) keeping the internal temperature below -70°C. Stirred at -78°C for thirty minutes then added a solution of tert-butyl allyl(2-morpholino-2-oxoethyl)carbamate (6.6 g) in dry tetrahydrofuran (50 ml) keeping the internal temperature below -70°C. The reaction mixture was stirred for seven hours, stored in the freezer at ~ -20°C for two days then poured into saturated aqueous ammonium chloride (100 ml), diluted with ethyl acetate (100 ml) and extracted. The organic layer was washed with brine then dried (MgSC"4) and evaporated and the residue was purified by silica gel column chromatography (gradient from 0% to 20% ethyl acetate / hexane) to afford the title compound (2.986 g) as a pale yellow oil.
LCMS: Rt 1.62 min, m/z 277 [M+H]+.
1H-NMR (600 MHz, CDC13) δ (ppm): 1.29 - 1.56 (m, 9 H) 3.86 - 4.10 (m, 2 H) 4.76 - 4.98 (m, 2 H) 5.07 - 5.23 (m, 2 H) 5.76 - 5.93 (m, 1 H) 7.40 - 7.56 (m, 1 H) 7.78 - 7.91 (m, 1 H) 8.04 (t, J=7.63 Hz, 1 H) 8.66 (dd, J=l 1.44, 4.40 Hz, 1 H)
14-(5) Synthesis of (3aR,6aR -tert-butyl l-((R l-phenylethylV6a-(pyridin-2- yl)tetrahvdro-lH-pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
To a solution of tert-butyl allyl(2-oxo-2-(pyridin-2-yl)ethyl)carbamate (2.98g) and (R)-N-(l-phenylethyl)hydroxyl amine (2 g) in dry tetrahydrofuran (60 ml) was added ethyl orthotitanate (5 g). The reaction was split over four sealed tubes and heated to 70°C for one hour then to 80°C for ninety six hours. The reaction mixtures were cooled, combined and then stirred vigorously in ethyl acetate (50 ml) and water (50 ml) for fifteen minutes. The solid formed was filtered off and washed thoroughly with ethyl acetate and the layers separated, the organic layer was dried (MgS04) and evaporated. The diastereoisomers were separated by three purifications by silica gel column chromatography (gradient from 0% to 2% methanol/dichloromethane) to afford the title compound (3.143 g; approximately 16 : 1 (3aR,6aR)-tert-butyl l-((R)-l-phenylethyl)- 6a-(pyridin-2-yl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate : (3aS,6aS)- tert-butyl 1 -((R)- 1 -phenylethyl)-6a-(pyridin-2-yl)tetrahydro- 1 H-pyrrolo [3 ,4- c]isoxazole-5(3H)-carboxylate) as a pale yellow foam.
LCMS: Rt 1.74 min, m/z 396 [M+H]+.
1H-NMR (600 MHz, CDC13) δ (ppm): 1.23 (d, J=6.46 Hz, 3 H) 1.44 (br. s., 9 H) 3.28 (br. s., 1 H) 3.33 - 3.66 (m, 4 H) 3.87 - 4.31 (m, 3 H) 6.93 - 7.36 (m, 6 H) 7.51 (d, J=7.92 Hz, 1 H) 7.67 - 7.86 (m, 1 H) 8.28 - 8.49 (m, 1 H)
14-(6) Synthesis of (3R,4R)-tert-butyl 3-amino-4-(hvdroxymethyl)-3-(pyridin-2- vDp yrrolidine- 1 -carboxylate
To a solution of (3aR,6aR)-tert-butyl 1-((R)-1 -phenyl ethyl)-6a-(pyridin-2- yl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (2.63 g) in 10%> aqueous methanol (30 ml) was added ammonium formate (1.7 g) and 10% palladium on carbon
(0.26 g) and the mixture stirred at 65°C for twenty three hours. Ammonium formate (1.7 g) and 10%) palladium on carbon (0.26g) were added and the mixture stirred at 65°C for a further two hours then ammonium formate (1.7 g) was added and the mixture stirred at 65°C for a further three and a half hours then ammonium formate (1.7 g) was added and the mixture stirred at 65°C for a further three and a half hours then ammonium formate (1.7 g) was added and the mixture stirred at 65°C for a further twenty four hours. The catalyst was filtered off washing thoroughly with methanol and evaporated. The residue was purified by silica gel column chromatography (gradient from 0% to 100% ethyl acetate / hexane then 5% methanol / ethyl acetate) to afford the title compound (0.87 g) as a colourless oil which was used in the next step without further purification. 14-(7) Synthesis of (3R.4RVtert-butyl 3-(3-benzoylthioureido -4-(hvdroxymethvn-3- (pyridin-2-vOpyrrolidine- 1 -carboxylate
To a solution of (3R,4R)-tert-butyl 3-amino-4-(hydroxymethyl)-3-(pyridin-2- yl)pyrrolidine-l-carboxylate (0.87 g) in dichloromethane (15 ml) at -15°C was added benzoyl isothiocyanate (0.4 ml) in dichloromethane (5 ml) and the reaction mixture stirred at -15°C for ninety minutes then evaporated with a stream of nitrogen. The residue was purified by silica gel column chromatography (gradient from 0% to 100% ethyl acetate / hexane then 5% methanol/ethyl acetate) to afford the title compound (1 g) as a white foam.
LCMS: Rt 1.51 min, m/z 457 [M+H]+.
14-(8) Synthesis of (4aR.7aR -tert-butyl 2-benzamido-7a-("pyridin-2-ylV4a.5.7.7a- tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
To a solution of (3R,4R)-tert-butyl 3-(3-benzoylthioureido)-4-(hydroxymethyl)- 3-(pyridin-2-yl)pyrrolidine-l-carboxylate (1 g) in dichloromethane (1 1 ml) and pyridine (0.9 ml) at -40°C was added dropwise triflic anhydride (0.6 ml) and the reaction mixture stirred for one hour. The reaction mixture was diluted with ethyl acetate (50 ml) and washed with aqueous saturated sodium bicarbonate (2 x 25 ml) and aqueous saturated sodium chloride (25 ml) then dried (MgS04) and evaporated to afford the title compound (0.813 g) as a yellow foam.
LCMS: Rt 1.67 min, m/z 439 [M+H]+.
14-(9) Synthesis of N-((4aR.7aRV7a-(pyridin-2-yl .4a.5.6.7.7a- hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
To a solution of (4aR,7aR)-tert-butyl 2-benzamido-7a-(pyridin-2-yl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l ,3]thiazine-6(4H)-carboxylate (0.812 g) in dichloromethane (10 ml) at -0°C was added dropwise TFA (5 ml) and the reaction mixture stirred for four hours. The reaction mixture was evaporated and purified by SCX (10 g) to afford the title compound (0.571 g) as a pale brown solid. LCMS: Rt 1.06 min, m/z 339 [M+H]+.
14-(10) Synthesis of N-((4aR,7aR -6-carbamimidoyl-7a-(pyridin-2-vn-4,4a,5.6.7.7a- hexahydro yrrolo Γ3 ,4-dl Γ 1 ,31thiazin-2-yl)benzamide hydrochloride
To a solution of N-((4aR,7aR)-7a-(pyridin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.571 g) in N,N- dimethylformamide (7 ml) was added lH-pyrazole-l-carboximidamide hydrochloride (0.27 g) followed by diisopropylamine (0.33 ml) added dropwise and the reaction mixture stirred at room temperature for seventeen hours. The mixture was evaporated to dryness and used crude in the next step.
LCMS: Rt 1.05 min, m/z 381 [M+H]+.
14-(11) Synthesis of N-((4aR,7aR)-6-(5-fluoro-4-methyl-6-oxo-l,6-dihvdropyrimidin- 2-yl)-7a-(pyridin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
To a mixture of N-((4aR,7aR)-6-carbamimidoyl-7a-(pyridin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride (assumed 0.703 g) in ethanol (10 ml) was added ethyl 2-fluoro-3-oxobutanoate (0.57 g) followed by sodium ethoxide (1.26 ml, 21% in ethanol) and the mixture refluxed for two hours. The reaction mixture was diluted with ethyl acetate (100 ml), washed with water (50 ml) and brine (50 ml) then dried (MgSC"4) and evaporated (Note: the aqueous was back extracted several times with dichloromethane). The residue was purified by silica gel column chromatography (gradient from 0 to 100% ethyl acetate / hexane followed by 5% methanol / ethyl acetate) to afford the title compound (0.613 g) as a pale yellow solid.
LCMS: Rt 1.27 min, m/z 465 [M+H]+.
1H-NMR (600 MHz, CDC13) δ (ppm): 2.09 (d, J=2.93 Hz, 3 H) 2.93 (d, J=3.52 Hz, 1 H) 2.99 (d, J=3.52 Hz, 1 H) 3.32 - 3.46 (m, 1 H) 3.64 - 3.76 (m, 1 H) 3.81 (br. s., 1 H) 4.03 (m, J=7.00 Hz, 1 H) 4.15 (d, J=11.15 Hz, 1 H) 7.36 - 7.42 (m, 1 H) 7.42 - 7.49 (m, 2 H) 7.53 (d, J=7.92 Hz, 2 H) 7.86 - 7.95 (m, 1 H) 7.96 - 8.12 (m, 2 H) 8.65 (d, J=4.11 Hz, 1
H) 10.36 (br. s, 1 H) 11.49 (br. s, 1 H)
14-(12) Synthesis of N-((4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- (pyridin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
To a solution of N-((4aR,7aR)-6-(5-fluoro-4-methyl-6-oxo-l ,6- dihydropyrimidin-2-yl)-7a-(pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.61 g) in N,N-dimethylformamide (20 ml) was added potassium carbonate (0.27 g) followed by methyl iodide (0.082 ml) in N,N- dimethylformamide (5 ml) and the mixture stirred at room temperature for one hour. The reaction mixture was diluted with ethyl acetate (250 ml), washed with water (2 x 50 ml and 100 ml) then dried (MgS04) and evaporated. The residue was purified by silica gel column chromatography (gradient from 0 to 50% ethyl acetate / hexane) to afford the title compound (0.343 g) as a white foam.
LCMS: Rt 1.74 min, m/z 479 [M+H]+.
1H-NMR (600 MHz, DMSO) δ (ppm): 2.23 (br. s., 3 H) 2.88 - 2.99 (m, 1 H) 3.00 - 3.08 (m, 1 H) 3.35 - 3.53 (m, 1 H) 3.65 - 3.79 (m, 1 H) 3.82 - 4.00 (m, 4 H) 4.07 - 4.29 (m, 2 H) 7.35 - 7.41 (m, 1 H) 7.42 - 7.48 (m, 2 H) 7.48 - 7.55 (m, 1 H) 7.57 (d, J=7.92 Hz, 1 H) 7.87 - 7.96 (m, 1 H) 7.97 - 8.10 (m, 2 H) 8.63 - 8.69 (m, 1 H) 10.08 - 11.26 (m, 1 H)
14-(13) Synthesis of (4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- (pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2-amine
To a solution of N-((4aR,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 7a-(pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.336 g) in methanol (10 ml) was added potassium carbonate (0.2 g) and the mixture heated at 60°C for three hours. Allowed to cool and the reaction mixture loaded onto an SCX column (10 g) and partially purified, then purified by silica gel column
chromatography (Method G2, gradient from 0% to 50% ethyl acetate / hexane) to afford the title compound (0.175 g) as a white solid.
LCMS: Rt 1.11 min, m/z 375 [M+H]+.
1H-NMR (600 MHz, DMSO) δ (ppm): 2.21 (d, J=15.26 Hz, 3 H) 2.83 - 3.03 (m, 2 H) 3.07 - 3.22 (m, 1 H) 3.58 - 3.67 (m, 1 H) 3.67 - 3.82 (m, 2 H) 3.83 - 3.97 (m, 3 H) 3.97 - 4.09 (m, 1 H) 6.03 (br. s., 2 H) 7.21 - 7.33 (m, 1 H) 7.43 (d, J=7.92 Hz, 1 H) 7.81 (d, J=1.76 Hz, 1 H) 8.56 (d, J=3.81 Hz, 1 H)
Example 15: ( ±)-( 4aR*,7aR*)-6-( 5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-
H-ftrifluoromethvDpyridin-l-vD^^a^^ ^a-hexahvdropyrroloiS^- dl [l,31thiazin-2-amine
Figure imgf000077_0001
15-(7) 15-(8) 15-(9)
15-(1) Synthesis of (±)-(3aR*,6aR*)-tert-butyl 6a-(4-(trifluoromethyl)pyridin-2- yl)tetrahvdro-lH-pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
To a solution of 2-dimethylaminoethanol (2.84 ml, 28.3 mmol) in toluene (85 ml) at 0°C was added dropwise under nitrogen a 1M solution of
((trimethylsilyl)methyl)lithium in pentane (85 ml, 84.8 mmol), the solution became yellow at this point. After being stirred for 30 min at this temperature, a solution of 2- bromo-4-(trifluoromethyl)pyridine (3.50 ml, 28.3 mmol) in toluene (27 ml) was added dropwise. The resulting brown solution was stirred at 0°C for 30 min and was then cooled to -78°C. A premade solution of tert-butyl 3a,4-dihydro-3H-pyrrolo[3,4- c]isoxazole-5(6H)-carboxylate (i-(5)) (2 g, 9.4 mmol) and BF3.OEt2 (2.4 ml, 18.84 mmol) in THF (18 ml) and toluene (18 ml) was added dopwise to the previous solution at -78°C. The mixture was left to warm to RT overnight and was then quenched with water. The organic layer was extracted with EtOAc (x3), the combined organic extracts were washed with brine, dried over MgS04 and concentrated under reduced pressure. The residue was then purified by silica gel column chromatography (gradient from 0% to 50% EtOAc in Hexanes) to give the title compound as a brown oil (1.67 g). LCMS: Rt 1.66 min, m/z= 360 [M+H]+.
15 -(2) Synthesis of (±V(3R R*Vtert-butyl 3-amino-4-(hvdroxymethylV3-(4- (trifluoromethyl)pyridin-2-yl)pyrrolidine- 1 -carboxylate
Obtained as a brown foam (671 mg) following analogous procedure to that prepared compound l-(2) as described in Example 1, starting from (±)-(3aR*,6aR*)- tert-butyl 6a-(4-(trifluoromethyl)pyridin-2-yl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole- 5(3H)-carboxylate 15-(1) (1.67 g).
LCMS: Rt 1.13 min, m/z 362 [M+H]+.
15-(3) Synthesis of (±W3R R*Vtert-butyl 3-(3-benzoylthioureido -4- (hydrox ymethyl)-3 -(4-(trifluoromethyl)p yridin-2-yl)p yrrolidine- 1 -carboxylate
Obtained as a yellow foam (473 mg) following analogous procedure to that prepared compound l-(3) as described in Example 1, starting from (±)-(3R*,4R*)-tert- butyl 3-amino-4-(hydroxymethyl)-3-(4-(trifluoromethyl)pyridin-2-yl)pyrrolidine-l- carboxylate 15 -(2) (671 mg).
LCMS: Rt 1.68 min, m/z 525 [M+H]+.
15 -(4) Synthesis of (± -(4aR*,7aR* -tert-butyl 2-benzamido-7a-(4- (trifluoromethyl)pyridin-2-yl)-4a,5 ,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)- carboxylate
Obtained as a yellow foam (383 mg) following analogous procedure to that prepared compound l-(4) as described in Example 1, starting from (±)-(3aR*,6aR*)- tert-butyl 3-(3-benzoylthioureido)-4-(hydroxymethyl)-3-(4-(trifluoromethyl)pyridin-2- yl)pyrrolidine-l -carboxylate 15-(3) (473 mg).
LCMS: Rt 1.85 min, m/z 507 [M+H]+.
15-(5 Synthesis of (± -(4aR*,7aR* -7a-(4-(trifiuoromethvnpyridin-2-vn-4,4a,5.6.7.7a- hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Obtained as a brown oil (308 mg) following analogous procedure to that prepared compound l-(5) as described in Example 1, starting from (±)-(4aR*,7aR*)- tert-butyl 2-benzamido-7a-(4-(trifluoromethyl)pyridin-2-yl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate 15-(4) (383 mg).
LCMS: Rt 1.28 min, m/z 407 [M+H]+.
15 -(6) Synthesis of (±)-(4aR*,7aR*)-6-carbamimidoyl-7a-(4-(trifluoromethvnpyridin-2- yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride Obtained (364 mg) following analogous procedure to that prepared compound 1- (6) as described in Example 1, starting from (±)-(4aR*,7aR*)-7a-(4- (trifluoromethyl)pyridin-2-yl)-4,4a,5,6^
yl)benzamide 15-(5) (308 mg).
LCMS: Rt 1.30 min, m/z 449 [M+H]+.
15 -(7) Synthesis of (±)-(4aR*,7aR*)-6-(5-fluoro-4-metliyl-6-oxo-l,6-dilivdropyrimidin- 2-yl)-7a-(4-(trifluoromethyl)pyridin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
Obtained as a yellow solid (325 mg) following analogous procedure to that prepared compound l-(7) as described in Example 1, starting from (±)-(4aR*,7aR!i:)-6- carbamimidoyl-7a-(4-(trifluoromethyl)pyridin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride 15-(6) (364 mg). LCMS: Rt 1.50 min, m/z 533 [M+H]+.
15 -(8) Synthesis of (±)-(4aR*,7aR*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-vn- 7a-(4-(trifluoromethyl)pyridin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-diri,31thiazin- 2-vDbenzamide
Obtained as a colorless foam (179 mg) following analogous procedure to that prepared compound l-(8) as described in Example 1, starting from (±)-(4aR*,7aR!i:)-6- (5-fluoro-4-methyl-6-oxo-l,6-dihydropyrimidin-2-yl)-7a-(4-(trifluoromethyl)pyridin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 15-(7) (325 mg). LCMS: Rt 1.91 min, m/z 547 [M+H]+. 15-(9 Synthesis of (± -(4aR*,7aR* -6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-vn-
7a-(4-(trifluoromethyl)pyridin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-diri,31thiazin- 2-amine (Example 15)
Obtained as a colorless solid (80 mg) following analogous procedure to that prepared compound l-(9) as described in Example 1, starting from (±)-(4aR*,7aR*)-6- (5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(4-(trifluoromethyl)pyridin-2-yl)-
4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 15-(8) (179 mg). LCMS: Rt 1.32 min, m/z 443 [M+H]+.
1H NMR (600 MHz, CDC13) δ ppm 2.30 (s, 3 H), 2.95 (dd, J=13.1, 4.0 Hz, 1 H), 3.14 (d, J=10.9 Hz, 1 H), 3.47-3.56 (m, 1 H), 3.81-4.05 (m, 6 H), 4.05-4.12 (m, 1 H), 7.42 (d, J=4.4 Hz, 1 H), 7.80 (s, 1 H), 8.76 (d, J=5.0 Hz, 1 H). Example 16 : ( 4aR,7aS)-7a-( 2,5-difluorophenvD-6-( 5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000080_0001
16-(6) 16-(5) 16-(4)
Figure imgf000080_0002
16-(1) Synthesis of (±y(3aR*,6aS*Vtert-butyl 6a-(2,5-difluorophenvntetrahvdro-lH- pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
To a solution of l-bromo-2,5-difluorobenzene (3.64 g) in dry tetrahydrofuran (5 mL) and dry toluene (25 mL) at -78°C under nitrogen was added dropwise n-butyl lithium (7.55 mL;2.5 N in hexanes) keeping the internal temperature below -70°C. Stirred at -78°C for one hour then added a -78°C solution of tert-butyl 3a,4-dihydro-3H- pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, obtained as described in preparation example i-(5), (2 g) and boron trifluoride etherate (2.4 mL) in dry tetrahydrofuran (20 mL) keeping the internal temperature below -60°C. The mixture was then stirred at -
78°C for two hours. The reaction was quenched with aqueous saturated ammonium chloride (100 mL), extracted with ethyl acetate (100 mL) then dried (MgS04) and evaporated. The residue was dissolved in dichloromethane and applied to a lOOg SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (1.2 g) as a colourless oil.
LCMS: Rt 1.55 min, m/z 327 [M+H]+.
1H NMR (400 MHz, CDCl3-d) δ ppm 1.48 (s, 9 H) 3.30 (d, J=7.83 Hz, 1 H) 3.45 - 3.86 (m, 5 H) 4.48 (t, J=8.38 Hz, 1 H) 4.93 - 5.24 (m, 1 H) 6.86 - 7.12 (m, 2 H) 7.64 (m, 1 H) 16-(2) Synthesis of (±W3S*.4R*Vtert-butyl 3-amino-3-(2.5-difluorophenyl - (hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a solution of (±)-(3aR*,6aS*)-tert-butyl 6a-(2,5-difluorophenyl)tetrahydro- lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (1.15 g) in acetic acid (9 mL) was added zinc dust (0.576 g) and the reaction mixture stirred at room temperature for twenty four hours. The reaction mixture was filtered through celite washing thoroughly with ethyl acetate then evaporated. The residue was dissolved in ethyl acetate (100 mL) and washed with aqueous saturated sodium bicarbonate (2 x 50 mL) and aqueous saturated sodium chloride (50 mL) then dried (MgS04) and evaporated to afford the title compound (1.16 g) as a white foam.
LCMS: Rt 0.97 min, m/z 329 [M+H]+.
16-(3) Synthesis of (±W3S R*Vtert-butyl 3-(3-benzoylthioureidoV3-(2,5- difluorophenyl)-4-(hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a solution of (±)-(3S*,4R*)-tert-butyl 3-amino-3-(2,5-difluorophenyl)-4-
(hydroxymethyl)pyrrolidine-l -carboxylate (1.157 g) in dichloromethane (15 mL) was added benzoyl isothiocyanate (0.61 mL) and the reaction mixture stirred at room temperature for twenty four hours and evaporated. The residue was dissolved in dichloromethane and applied to a 50 g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (1.518 g) as a white foam.
LCMS: Rt 1.86 min, no mass ion.
1H NMR (400 MHz, DMSO-d6) δ ppm 1.40 (s, 9 H) 2.63 - 2.88 (m, 1 H) 3.43 (s, 2 H) 3.55 - 3.82 (m, 2 H) 4.07 - 4.35 (m, 1 H) 4.39 - 4.67 (m, 1 H) 5.19 (d, J=2.93 Hz, 1 H) 6.98 - 7.35 (m, 3 H) 7.42 - 7.75 (m, 3 H) 7.79 - 8.07 (m, 2 H) 11.27 (br. s., 1 H) 11.94
(d, J=9.66 Hz, 1 H)
16-(4) Synthesis of (±)-(4aR*,7aS*)-tert-butyl 2-benzamido-7a-(2,5-difluorophenyl)- 4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
To a solution of (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(2,5- difluorophenyl)-4-(hydroxymethyl)pyrrolidine-l -carboxylate (1.51 g) in
dichloromethane (12 mL) and pyridine (1.2 mL) at -10°C was added dropwise triflic anhydride (0.83ml) and the reaction mixture stirred for two hours. The reaction mixture was diluted with ethyl acetate (100 mL) and washed with aqueous saturated sodium bicarbonate (2 x 50 mL) and aqueous saturated sodium chloride (50 mL) then dried (MgS04) and evaporated and triturated with diethyl ether to afford the title compound (1.176 g) as a pale yellow solid.
LCMS: Rt 1.71 min, m/z 474 [M+H]+. 16-(5) Synthesis of (± -N-((4aR";,7aSi|; -7a-(2,5-difluoroplienvn-4,4a,5,6JJa- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
A solution of (±)-(4aR*,7aS*)-tert-butyl 2-benzamido-7a-(2,5-difluorophenyl)- 4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate (1.17 g) in dichloromethane (4 mL) and trifluoroacetic acid (2 mL) was stirred at room temperature for two hours. The reaction mixture was evaporated to dryness and the residue was purified by SCX (10 g) to afford the title compound (0.902 g) as a pale yellow foam. LCMS: Rt 1.09 min, m/z 374 [M+H]+.
16-(6) Synthesis of (±)-N-((4aR*,7aS*)-6-carbamimidoyl-7a-(2,5-difluorophenyl)- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
To a solution of (±)-N-((4aR*,7aS!i:)-7a-(2,5-difluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (0.892 g) ίη Ν,Ν- dimethylformamide (7 mL) was added lH-pyrazole-l-carboximidamide hydrochloride (0.361 g) followed by diisopropylamine (0.35 mL) added dropwise and the reaction mixture stirred at room temperature for four hours. lH-pyrazole-l-carboximidamide hydrochloride (90 mg) and diisopropylamine (0.09 mL) was added and continued stirring for two hours then lH-pyrazole-l-carboximidamide hydrochloride (0.18 g), diisopropylamine (0.2 mL) and N,N-dimethylformamide (3 mL) were added and continued stirring for seventeen hours. The precipitate formed was filtered off and the solid washed with diethyl ether and dried to afford the title compound (1.242 g) as a white solid which was used without further purification.
LCMS: Rt 1.14 min, m/z 416 [M+H]+.
16-(7) Synthesis of (± -N-((4aR*,7aS'|; -7a-(2,5-difluorophenvn-6-(5-fluoro-4-methyl- 6-oxo-l,6-dihvdropyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
To a solution of (±)-N-((4aR*,7aS!i:)-6-carbamimidoyl-7a-(2,5-difiuorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride (1.242 g) in ethanol (10 mL) was added ethyl 2-fluoroacetoacetate (0.28 mL) followed by sodium ethoxide (1.68 mL, 21% in ethanol) and the mixture refluxed for four hours. The reaction mixture was diluted with ethyl acetate (100 mL), washed with aqueous saturated sodium bicarbonate solution (50 mL) and water (50 mL) then dried (MgS04) and evaporated to a red foam (1.06 g).The residue was dissolved in dichloromethane and applied to a 50g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 100% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.707 g) as an off-white solid. LCMS: Rt 1.36min, m/z 500 [M+H]+.
16-(8) Synthesis of (±yN-((4aR^7aS*V7a-(2,5-difluoropheny^
methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-din ,31thiazin-2- vDbenzamide
To a solution of (±)-N-((4aR*,7aS!i:)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4- methyl-6-oxo-l,6-dihydropyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide (0.698 g) in N,N-dimethylformamide (3 mL) was added potassium carbonate (0.29 g) followed by a solution of methyl iodide (0.087 mL) in N,N-dimethylformamide (2 mL) and the mixture stirred at room temperature for forty minutes. The reaction mixture was diluted with ethyl acetate (100 mL), washed with water (3 x 50 mL) then dried (MgS04) and evaporated.The residue was dissolved in dichloromethane and applied to a 25g SNAP KP-Si column. Purified on the Biotage Isolera 4 eluting with 0 to 30% ethyl acetate / hexane over 10 column volumes to afford the title compound (0.488 g) as a white foam.
LCMS: Rt 1.77 min, m/z 514 [M+H]+.
Separation of N-((4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- vDbenzamide and N-((4aS,7aR)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide:
The isomers of (±)-N-((4aR*,7aS!i:)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide were separated by preparative chiral HPLC, Method H2, (IC column (#3), eluent (10% dichloromethane / hexane):EtOH 97:3 (v/v)) to afford the faster running enantiomer, N-((4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide (0.207 g) as a white solid.
LCMS: Rt 1.77 min, m/z 514 [M+H]+.
16-(9) Synthesis of (4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-amine (Example 16)
To a solution of N-((4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide (0.2 g) in methanol (2 mL) was added DBU (0.2 mL) and the reaction mixture stirred at 80°C for two hours then evaporated. The residue was purified by preparative HPLC, Method D, (1 injection in 1 mL DMF). The residue was isolated by SCX (2 g) to afford the title compound (0.096 g) as a white solid.
LCMS: Rt 1.21 min, m/z 410 [M+H]+.
1H NMR (400 MHz, CDCl3-d) δ ppm 2.30 (d, J=2.81 Hz, 3 H) 2.89 - 3.10 (m, 2 H) 3.14 - 3.29 (m, 1 H) 3.69 - 3.87 (m, 3 H) 3.96 (s, 3 H) 4.28 (d, J=11.25 Hz, 1 H) 4.45 (br. s., 2 H) 6.89 - 7.07 (m, 2 H) 7.11 (ddd, J=9.81, 6.45, 3.06 Hz, 1 H)
Example 17: (±)- (4aR*,7aS*)-7a- ,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.,6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000084_0001
'-(12) 17-(11) 17-(10) 17-(1) Synthesis of N-(2,4-dimethoxybenzyl)prop-2-en-l -amine
Allylamine (11.29 ml, 150.445 mmol) and 2,4-Dimethoxybenzaldehyde (20 g, 120.356 mmol) were dissolved in DCM (540 ml, 8392.539 mmol) at RT under nitrogen before acetic acid (8.61 ml, 150.445 mmol) was added and the resultant suspension stirred for 5 minutes. Sodium triacetoxyborohydride (44.6 g, 210.623 mmol) was then added and the resultant solution stirred at RT for 5h. The reaction mixture was concentrated before being redissolved in DCM and the organic layer washed with 2M NaOH (aq). The layers were separated and the aqueous extracted a further two times using DCM. The combined organics were washed with brine before being dried over magnesium sulfate, filtered and solvent removed in vacuo to give the title compound (27.54 g, 88 mmol, 72.9 % yield) as a yellow oil.
1H NMR (400 MHz, CDCl3-< ) δ ppm 3.44 (d, J=6.72 Hz, 2 H) 3.80 (s, 3 H) 3.86 (s, 3 H) 4.03 (s, 2 H) 5.31 - 5.41 (m, 2 H) 5.92 - 6.05 (m, 1 H) 6.42 - 6.49 (m, 2 H) 7.24 (d, J=8.93 Hz, 1 H).
17-(2) Synthesis of 2-(allyl(2,4-dimethoxybenzyl)amino)-l-(2,4- difluorophenvDethanone
2-Bromo-l-(2,4-difluorophenyl)ethanone (10.62 g, 45.187 mmol) was dissolved in DCM (200 mL) at RT under nitrogen before Ν,Ν-diisopropylethylamine (11.84 ml, 67.78 mmol) was added. N-(2,4-dimethoxybenzyl)prop-2-en-l -amine, 17-(1), (11.71 g, 56.483 mmol) as a solution in DCM (20 mL) was then added to the reaction mixture and the resultant solution left to stir at RT under nitrogen for 2h. The reaction mixture was quenched with sat. NH4C1 (aq), before being diluted with sat. NaHC03 (aq) and the layers separated. The aqueous layer was further extracted with DCM (x2) before the organic fractions were combined, dried over MgS04, filtered and solvent removed in vacuo to afford crude material as a brown oil. Crude material was purified by column chromatography (normal phase, 340g, Biotage SNAP cartridge KP-Sil, lOOmL per min, gradient 0% to 40% EtOAc in n-hexane) to afford the title compound (9.960 g, 27.6 mmol, 61.0 % yield) as an orange oil.
LCMS (Acquity UPLC C 18, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5-
95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.13min, ES+: 362.58 [MH]+.
1H NMR (400 MHz, CDCl3-</) δ ppm 3.36 (d, J=6.60 Hz, 2 H) 3.64 (s, 3 H) 3.80 (s, 3 H) 3.84 (s, 2 H) 3.86 (d, J=3.06 Hz, 2 H) 5.14 - 5.26 (m, 2H) 5.89 - 6.02 (m, 1 H) 6.40 (d, J=2.45 Hz, 1 H) 6.44 (dd, J=8.25, 2.38 Hz, 1 H) 6.83 (ddd, J=10.85, 8.65, 2.38 Hz, 1 H) 6.91 - 6.98 (m, 1 H) 7.19 (d, J=8.31 Hz, 1 H) 7.88 (td, J=8.44, 6.72 Hz, 1 H). 17-(3) Synthesis of 2-(allyl(2,4-dimethoxybenzyl)amino)- 1-(2,4- difluorophenyl)ethanone oxime
2-(Allyl(2,4-dimethoxybenzyl)amino)- 1 -(2,4-difluorophenyl)ethanone, 17-(2), (9.960 g, 27.561 mmol) was dissolved in ethanol (176 ml, 3008.688 mmol) before hydroxylamine hydrochloride (3.83 g, 55.122 mmol) and sodium acetate (4.52 g, 55.122 mmol) were added and the resultant solution heated to 90 °C for 4h. Solvent was removed in vacuo before the residue was redissolved in EtOAc and washed with sat. NaHCC"3 (aq). The layers were separated and the aqueous further extracted with EtOAc (x4). The combined organics were dried over MgS04, filtered and solvent removed in vacuo to give crude material as a dark orange oil. Crude material was purified by column chromatography (normal phase, 340g, Biotage SNAP cartridge KP-Sil, lOOmL per min, gradient 0% to 60% EtOAc in n-hexane) to afford the title compound (6.52 g, 17.32 mmol, 62.9 % yield) as an orange oil.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.23min, 100% by ELSD, ES+: 377.57 [MH]+. desired product.
1H NMR (400 MHz, METHANOL-^) δ ppm 3.03 (dd, J=24.09, 7.21 Hz, 2 H) 3.36 - 3.54 (m, 4 H) 3.72 (d, J=0.98 Hz, 3 H) 3.76 (d, J=l .83 Hz, 3 H) 5.01 - 5.16 (m, 2 H) 5.67 - 5.85 (m, 1 H) 6.29 - 6.39 (m, 1 H) 6.42 - 6.47 (m, 1 H) 6.80 - 7.04 (m, 4 H).
17-(4) Synthesis of (±)- (3aR^6aS*V6a-(2,4-difluorophenyr)-5-(2,4- dimethoxybenzyl)hexahvdro-lH-pyrrolor3,4-c1isoxazole
2-(Allyl(2,4-dimethoxybenzyl)amino)- 1 -(2,4-difluorophenyl)ethanone oxime, 17-(3), (6.52 g, 17.322 mmol) was dissolved in toluene (129 ml, 1212.549 mmol) before the reaction mixture was heated at 120 °C. After 44h reaction showed progression of about 80%. Reaction mixture was allowed to cool before being concentrated in vacuo. The residue was then dissolved in DCM and purified by column chromatography (normal phase, 340g, Biotage SNAP cartridge KP-Sil, 50mL per min, gradient 0%> to 80% EtOAc in n-hexane 20CV) to afford the title compound (3.169 g, 8.42 mmol, 48.6 %> yield) as a dark orange oil.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.12min, ES+: 377.57 [MH]+. 17-(5) Synthesis of (±y((3R S*y4-amino-4-(2,4-difluorophenyr)-l -(2.4- dimethoxybenzyl)pyrrolidin-3-yl)methanol
(±)-(3aR*,6aS!i:)-6a-(2,4-Difluorophenyl)-5-(2,4-dimethoxybenzyl)hexahydro- lH-pyrrolo[3,4-c]isoxazole, 17-(4), (1.921 g, 5.104 mmol) was dissolved in acetic acid (26.5 ml, 462.088 mmol) at RT under nitrogen before zinc dust (3.34 g, 51.037 mmol) was added and the resultant solution stirred at RT for 19 h. The reaction mixture was filtered through celite washing thoroughly with ethyl acetate then evaporated. The residue was redissolved in ethyl acetate before sat. NaHC03 (aq) was added and the resultant solution stirred using a stirrer plate. The pH was adjusted to ~pH 9 using 1M NaOH (aq) before the layers were then separated. The aqueous layer was further extracted with EtOAc (x2) before the combined organics were washed with brine then dried (MgS04), filtered and evaporated to afford the title compound (1.773 g, 4.69 mmol, 92 % yield) as an orange oil.
LCMS (Acquity UPLC C 18, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time l .lOmin, 100% UV ES+: 379.61 [MH]+.
1H NMR (400 MHz, CDCl3-</) δ ppm 2.68 - 2.81 (m, 1 H) 2.83 - 3.05 (m, 3 H) 3.07 - 3.22 (m, 1 H) 3.71 - 3.92 (m, 10 H) 6.41 - 6.53 (m, 2 H) 6.71- 6.93 (m, 2 H) 7.27 - 7.33 (m, 1 H) 7.45 - 7.60 (m, 1 H).
17-(6) Synthesis of (± -N-(((3Si|;,4Ri|; -3-(2,4-difiuorophenvn-l-(2,4-dimethoxybenzvn- 4-(hvdroxymethyl)pyrrolidin-3-yl)carbamothioyl)benzamide
(±)-((3R*,4S*)-4-Amino-4-(2,4-difluorophenyl)-l-(2,4- dimethoxybenzyl)pyrrolidin-3-yl)methanol, 17-(5), (1.733 g, 4.58 mmol) was dissolved in DCM (30 ml, 466.252 mmol) before benzoyl isothiocyanate (0.646 ml, 4.809 mmol) was added and the reaction mixture stirred at RT for 45 minutes. Solvent was evaporated after this time to give crude material as a beige foam, which was redissolved in DCM before being purified by column chromatography (normal phase, 50g, Biotage SNAP cartridge KP-Sil, 50mL per min, gradient 0% to 85% EtOAc in n-hexane 30CV) to afford the title compound (1.542 g, 2.85 mmol, 62.2 %> yield) as a beige foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.46 min, ES+: 542.66 [MH]+.
1H NMR (400 MHz, CDCl3-</) δ ppm 2.89 - 3.26 (m, 2 H) 3.59 - 4.05 (m, 13 H) 6.37 -
6.55 (m, 2 H) 6.69 - 6.81 (m, 1 H) 6.82 - 6.92 (m, 1 H) 7.47 - 7.57 (m, 2 H) 7.58 - 7.72 (m, 2 H) 7.86 (d, J=7.34 Hz, 2 H) 8.81 (s, 1 H).
17-(7) Synthesis of (±yN-((4aR^7aS*V7a-(2,4-difluorophenyr)-6-(2,4- dimethoxybenzyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide To a solution of (±)-N-(((3S*,4R!i:)-3-(2,4-difluorophenyl)-l-(2,4- dimethoxybenzyl)-4-(hydroxymethyl)pyrrolidin-3-yl)carbamothioyl)benzamide, 17-(6), (1.705 g, 3.148 mmol) in DCM (50 ml, 777.087 mmol) and pyridine (1.018 ml, 12.592 mmol) at -50 °C was added dropwise Trifluoromethanesulphonic acid anhydride (1.451 ml, 8.626 mmol) and the reaction mixture stirred for lh at this temperature. The reaction mixture was quenched with sat. NaHC03 (aq) at -50°C before the reaction mixture was allowed to warm to RT. The layers were separated and the aqueous further extracted with DCM (x2). The combined organics were then washed with brine before being dried over MgS04, filtered and solvent removed in vacuo to give crude material as a bright yellow oil. Crude material was purified by column chromatography (normal phase, 50g, Biotage SNAP cartridge KP-Sil, 50mL per min, gradient 0% to 100% EtOAc in n-hexane over 35CV) to afford the title compound (1.115 g, 2.130 mmol, 67.6 % yield) as a beige foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.45min, ES+: 524.66 [MH]+. 17-(8) Synthesis of (±yN-((4aR^7aS*V7a-(2,4-difluorophenyr)-4,4a,5, 6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
(±)-N-((4aR*,7aS!i:)-7a-(2,4-Difluorophenyl)-6-(2,4-dimethoxybenzyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 17-(7), (267 mg, .51 mmol) and DCM (2mL, 31.083 mmol) were added to a rbf at RT under nitrogen before trifluoroacetic acid (1 mL, 12.98 mmol) was added dropwise. The reaction mixture was then heated to 55°C overnight. Solvent was removed in vacuo after this time before the residue was redissolved in DCM. The reaction mixture was quenched with sat. NaHC03 (aq), before being basified to pH 9 using 1M NaOH (aq). The layers were separated and the aqueous extracted a further three times with DCM. The combined organics were dried over MgS04, filtered and solvent removed in vacuo to give crude material. Crude material was purified by column chromatography (normal phase, lOg, Biotage SNAP cartridge KP-Sil, 12mL per min, gradient 0% to 80% EtOAc in n-hexane) to afford the title compound (162 mg, 0.434 mmol, 85 %> yield) as a beige foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.28min, ES+: 374.55 [MH]+.
17-(9) Synthesis of (± -N-((4aR*,7aS* -6-carbamimidoyl-7a-(2,4-difiuorophenvn- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
To a solution (±)-N-((4aR*,7aS!i:)-7a-(2,4-difluorophenyl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 17-(8), (162 mg, .434 mmol) in DMF (1 mL, 12.915 mmol) was added lH-pyrazole-l-carboximidamide hydrochloride (86 mg, .586 mmol) followed by N-ethyl-N-isopropylpropan-2-amine (0.113 mL, .651 mmol) added dropwise and the reaction mixture stirred at room temperature overnight. The reaction mixture was concentrated in vacuo to afford the title compound (196 mg, 0.434 mmol) and material used crude in next step.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.14min, ES+: 416.55 [MH]+.
17-(10) Synthesis of (± -N-((4aR";,7aSi|; -7a-(2,4-difiuorophenvn-6-(5-fiuoro-4- hvdroxy-6-methylpyrimidin-2-yl)-4^a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- vDbenzamide
To a solution of (±)-N-((4aR*,7aS!i:)-6-carbamimidoyl-7a-(2,4-difiuorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride, 17- (9), (196 mg, .434 mmol) in ethanol (4mL, 68.507 mmol) was added Ethyl 2- fluoroacetoacetate (0.109 mL, .867 mmol), then sodium ethoxide (0.356 mL, .954 mmol) (21% w/w solution in EtOH). The reaction was stirred at reflux for 1 h. The reaction mixture was diluted with EtOAc, sat. NaHC03 (aq), and H20 (to avoid emulsion). The two layers were separated and the aqueous phase extracted with EtOAc (x2), the combined organic extracts was washed with brine, dried over Na2S04 and concentrated under reduced pressure. The residue was purified by column
chromatography (normal phase, lOg, Biotage SNAP cartridge KP-Sil, 12mL per min, gradient 0% to 100% EtOAc in n-hexane over 20 CV then 8CV at 100%) to afford the title compound (130 mg, 0.260 mmol, 60.0 %> yield) as a beige solid.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.39min, ES+: 500.57 [MH]+.
1H NMR (400 MHz, CDCl3-</) δ ppm 2.19 (d, J=3.30 Hz, 3 H) 3.02 - 3.15 (m, 2 H) 3.52 (br. s., 2 H) 3.86 - 3.94 (m, 1 H) 3.94 - 4.03 (m, 1 H) 4.31 (d, J=11.49 Hz, 1 H) 6.76 - 7.10 (m, 2 H) 7.28 - 7.66 (m, 4 H) 8.13 (br. s., 2 H). 17-d 1) Synthesis of (± -2-((4aR*,7aS'|; -2-amino-7a-(2,4-difluorophenvn-4a,5JJa- tetrahvdropwolor3,4-diri,31thiazin-6(4H)-yl)-5-fluoro-6-methylpyrimidin-4-ol
(±)-N-((4aR*,7aS!i:)-7a-(2,4-Difluorophenyl)-6-(5-fluoro-4-hydroxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide, 17-(10), (130 mg, .26 mmol) was dissolved in methanol (2.1 mL, 51.907 mmol) before DBU (0.157 mL, 1.041 mmol) was added and the solution was heated to reflux for 3 h. LCMS showed -20% starting material after this time. A further 2.0 eq of DBU was added and heating continued for a further 1 h. Reaction mixture was allowed to cool before solvent was removed in vacuo and crude material purified by column chromatography (normal phase, lOg, Biotage SNAP cartridge KP-NH, 12mL per min, gradient 0% to 100% 5CV EtOAc in n-hexane, 0-20% MeOH in EtOAc 5CV) to afford the title compound (150 mg, 0.152 mmol, 58.3 % yield) Residual DBU, 40%> pure, as a yellow oil.
LCMS (Acquity UPLC C 18, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 0.88min, 100%, ES : 396.52 [MHf. Material was used as such in the next step. 1H NMR (400 MHz, CDCl3-< ) δ ppm 2.11 (d, J=2.93 Hz, 3 H) 2.69 - 2.80 (m, 1 H) 2.81 - 2.97 (m, 2 H) 3.50 - 3.64 (m, 3 H) 4.28 (d, J=11.25 Hz, 1H) 6.64 - 6.77 (m, 2 H) 7.22 - 7.31 (m, l H).
17-(12) Synthesis of (±)- (4aR*,7aS'|; -7a-(2,4-difluorophenvn-6-(5-fiuoro-4-methoxy- 6-methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2-amine (Example 17)
To a solution of (±)-2-((4aR*,7aS!i:)-2-amino-7a-(2,4-difluorophenyl)-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazin-6(4H)-yl)-5-fluoro-6-methylpyrimidin-4-ol, 17- (11), (150 mg, .152 mmol) (contains DBU, 40% pure) in N,N-dimethylformamide(l ml) was added potassium carbonate(42 mg) followed by methyl iodide (9.49 μΐ) in N,N- dimethylformamide(0.8 ml) and the mixture stirred at room temperature for two hours. LCMS showed 25% reaction progression after this time and so the reaction mixture was left stirring at RT. LCMS after 3 h indicated no change. A further 9.50 of Mel was added after this time and the solution left to stir at RT for a further lh. LCMS indicated 40% reaction progression. Reaction mixture was left stirring over night. LCMS showed no change. A further 19.0 of Mel was added and the reaction left to stir for a further 2h. No starting material remaining. Reaction mixture was then diluted with ethyl acetate.
The organic layer was washed with water (x3) then dried (MgS04) and evaporated to give crude material. This was purified by preparative HPLC using the Thermo Finnigan / Gilson system reverse phase HPLC (Phenomenex Luna CI 8, 250 x 50mm, ΙΟμιη, 80mL per min, gradient 20% to 95% (over 25min) then 95% (lOmin) MeCN in H20
[0.1% acetic acid]) (1 injection in 2ml DMF). Only 1 fraction was found to be pure which was concentrated in vacuo, the residue dissolved in methanol and material isolated using a SCX (1 g) cartridge to afford the title compound (12 mg, 0.029 mmol, 19.0 % yield) as a white foam.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.19min, 100%, ES+: 410.55 [MH]+.
1H NMR (400 MHz, DMSO- 6) δ ppm 2.21 (s, 3 H) 2.80 - 2.93 (m, 1 H) 2.95 - 3.08 (m, 2 H) 3.51 - 3.62 (m, 1 H) 3.62 - 3.76 (m, 2 H) 3.89 (br. d, J=12.60 Hz, 3 H) 3.98 - 4.10 (m, 1 H) 6.13 (br. s, 2 H) 7.11 (td, J=8.44, 2.45 Hz, 1 H) 7.18 - 7.28 (m, 1 H) 7.29 - 7.42 (m, 1 H).
Example 18: ( ±)-( 4aR*,7aR*)-6-( 5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fthiophen-l-vD^^a^^ ^a-hexahvdropyrroloiS^-dl il lthiazin-l-amine
Figure imgf000091_0001
18-(7) 18-(8) 18-(9)
18-(1) Synthesis of (±)-(3 aR* ,6aR*V tert-butyl 6a-(thiophen-2- vOtetrahydro- 1 H- pyrrolo[3,4-clisoxazole-5(3H)-carboxylate
To a solution of 2-bromothiophene (4.65 mL, 48.1 mmol) in dry THF (15 mL) and toluene (75 mL) at -78°C under nitrogen was added dropwise 1.6 M n-BuLi in hexanes (30 mL, 48.1 mmol). The reaction mixture was stirred at this temperature for 20 mins. BF3.0Et2 (6.1 mL, 48.1 mmol) was then added dropwise, followed by a solution of tert-butyl 3a,4-dihydro-3H-pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, prepared as described in preparation example i-(5), (6 g, 28.27 mmol) in THF (30 mL) over 25 min via canula. The mixture was stirred for 3h at -78°C and then quenched with sat. aq. NH4C1. (150 mL), and extracted with EtOAc (x3). The combined organic extracts were washed with brine, dried over Na2S04 and concentrated under reduced pressure to give the crude product as a brown oil (10.93 g). The residue was then purified by silica gel column chromatography (gradient from 10% to 50% EtOAc in Hexanes) to give the title compound as a yellow syrup (6.33 g, 76%>).
LCMS: Rt 1.39 min, m/z= 297 [M+H]+. 1H NMR (400 MHz, CDC13) δ ppm 1.47 (s, 9 H), 3.33 (tt, J=7.7, 4.1 Hz, 1 H), 3.52-3.63 (m, 1 H), 3.68-3.99 (m, 4 H), 4.18-4.45 (m, 1 H), 5.30 (br. s, 1 H), 7.01 (dd, J=4.9, 3.6 Hz, 1 H), 7.06 (dd, J=3.5, 1.2 Hz, 1 H), 7.24-7.28 (m, 1H). 18-(2 Synthesis of (± -(3R*.4R* -tert-butyl 3-amino-4-(hvdroxymethvn-3-(thiophen- 2-vDpyiTOlidine- 1 -carboxylate
To a solution of (±)-(3aR*,6aR*)-tert-butyl 6a-(thiophen-2-yl)tetrahydro-lH- pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (6.33 g, 21.4 mmol) in THF (155 mL) was added zinc powder (12.3 g, 187.9 mmol) and AcOH (12.5 mL, 218.3 mmol). The reaction mixture was stirred at r.t. for 4h. Another portion of AcOH (10 mL) and Zn (10 g) were added. The reaction mixture was stirred for 19h at r.t., then filtered over celite, washed with EtOAc and the resulting solution was concentrated under reduced pressure. The residue was then basified with saturated aqueous NaHC03 solution, extracted with EtOAc (x 2). The combined organic extracts were dried over Na2S04, concentrated to give the crude amino alcohol (6.35 g) as a colorless foam, which was used without further purification in the next step.
LCMS: Rt 0.96 min, m/z= 299 [M+H]+.
18-(3) Synthesis of (±y(3R*,4R*ytert-butyl 3-(3-benzoylthioureido -4- (hvdroxymethvD-3 -(thiophen-2- yl)p yrrolidine- 1 -carboxylate
Benzoyl isothiocyanate (3.72 mL, 27.7 mmol) was added dropwise to a solution (±)-(3R*,4R*)-tert-butyl 3-amino-4-(hydroxymethyl)-3-(thiophen-2-yl)pyrrolidine-l- carboxylate (6.35 g, 21.3 mmol) in DCM (37 mL). The reaction was stirred at r.t. for 2h and was then concentrated under reduced pressure. The residue was purified by silica gel column chromatography (gradient from 20% to 60% EtOAc in Hexanes) to afford the title compound as a colorless foam (8.18 g, 83%> over 2 steps).
LCMS: Rt 1.53 min, m/z =462 [M+H]+.
1H NMR (400 MHz, CDC13) δ ppm 1.49 (s, 9 H), 2.22-2.48 (m, 1 H), 2.67-2.84 (m, 1 H), 3.52-3.65 (m, 1 H), 3.73 (br. s., 1 H), 4.01 (m, 2 H), 4.21 (m, 1 H), 4.66-4.74 (m, 1 H), 6.96-7.01 (m, 1 H), 7.05 (d, J=3.3 Hz, 1 H), 7.26 (d, J=5.0 Hz, 1 H), 7.47-7.57 (m, 2
H), 7.64 (m, 1 H), 7.85 (m, 2 H), 8.91 (br. s., 1 H), 11.62-11.86 (m, 1 H).
18-(4) Synthesis of (± -(4aR*,7aR* -tert-butyl 2-benzamido-7a-(thiophen-2-vn- 4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
To a solution (±)-(3R*,4R*)-tert-butyl 3-(3-benzoylthioureido)-4-
(hydroxymethyl)-3-(thiophen-2-yl)pyrrolidine-l -carboxylate (5 g, 10.8 mmol) in dichloromethane (54 mL) was added pyridine (5.4 mL). The solution was cooled to - 20°C and Tf20 (2.7 ml, 16.2 mmol) was added dropwise over 30 min. The reaction was left to warm to 0°C over lh and was then quenched with saturated aqueous NaHC03 solution and extracted with CH2CI2 (x3). The combined organics were washed with brine, dried over Na2S04 and concentrated in vacuo. The residue was purified by silica gel column chromatography (gradient from 20% to 50% EtOAc in Hexanes) to afford the title product as a colorless foam (4.35 g, 91 >).
LCMS: Rt 1.71min, m/z 444 [M+H]+.
1H NMR (400 MHz, CDC13) δ ppm 1.48 (s, 9 H), 2.81-2.98 (m, 2 H), 3.29 (dd, J=12.9, 2.6 Hz, 1 H), 3.70-3.83 (m, 2 H), 3.84-3.96 (m, 2 H), 6.95-7.11 (m, 2 H), 7.30-7.34 (m, 1 H), 7.41-7.48 (m, 2 H), 7.53 (s, 1 H), 8.12 (br. s., 2 H), 12.55 (br. s, 1 H).
18-(5) Synthesis of (±yN-((4aR^7aR*V7a-(thiophen-2-yr)-4,4a,5, 6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
To a solution of (±)-(4aR*,7aR*)-tert-butyl 2-benzamido-7a-(thiophen-2-yl)- 4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate (4.35 g, 9.8 mmol) in dichloromethane (42 mL) was added TFA (21 mL). The reaction mixture was stirred for 1.5h at r.t. and was then concentrated under reduced pressure. The residue was purified by SCX to give the title product as a yellow foam (3.17 g, 94%>).
LCMS: Rt 1.11 min, m/z 344 [M+H]+.
1H NMR (400 MHz, CDC13) δ ppm 2.84 (dd, J=13.4, 4.2 Hz, 1 H), 2.95 (tt, J=8.4, 4.0 Hz, 1 H), 3.31-3.49 (m, 5 H), 7.02 (dd, J=5.1, 3.6 Hz, 1 H), 7.07 (d, J=2.6 Hz, 1 H),
7.30 (dd, J=5.1, 1.2 Hz, 1 H), 7.40-7.46 (m, 2 H), 7.48-7.54 (m, 1 H), 8.16 (d, J=7.2 Hz, 2 H).
18-(6) Synthesis of (± -N-((4aR*,7aR* -6-carbamimidoyl-7a-(thiophen-2-vn- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
To a solution of (±)-N-((4aR*,7aR!i:)-7a-(thiophen-2-yl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (3.17 g, 9.2 mmol) in DMF (19 mL) was added IH-pyrazole-l-carboximidamide hydrochloride (1.34 g, 9.5 mmol), then diisopropylamine (1.38 mL, 9.7 mmol). The reaction mixture was stirred for 6h at r.t.. IH-pyrazole-l-carboximidamide hydrochloride (700 mg) and diisopropylamine (0.7 mL) were added, and the reaction mixture left to stir at r.t. for 17h. The mixture was then concentrated under reduced pressure to give a viscous sticky oil which was used directly in the next step without further purification.
LCMS: Rt 1.15 min, m/z 386 [M+H]+.
18-(7) Synthesis of (±)- N-((4aR*JaR* -6-(5-fiuoro-4-methyl-6-oxo-L6- dihvdropyrimidin-2-yl)-7a-(thiophen-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide To a solution of the crude (±)-N-((4aR*,7aR*)-6-carbamimidoyl-7a-(thiophen-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride in EtOH (84 ml) was added ethyl 2-fiuoroacetoacetate (2.32 mL, 18.5 mmol), then NaOEt (7.6 mL, 20.3 mmol, 21% w/w solution in EtOH). The reaction was stirred at r.t. for 2h and at reflux for 2h. The reaction mixture was diluted with EtOAc and saturated aqueous NaHC03 solution. The two layers were separated and the aqueous phase extracted with EtOAc (x2). The combined organic extracts were washed with brine, dried over Na2S04 and concentrated under reduced pressure. The residue was purified by silica gel column chromatography (gradient from 60% to 100% EtOAc in Hexanes) to give the desired product as a colorless foam (3.27g, 75%> over 2 steps).
LCMS: Rt 1.34 min, m/z 470 [M+H]+.
1H NMR (400 MHz, CDC13) δ ppm 2.20 (d, J=3.3 Hz, 3 H), 2.96 (dd, J=13.6, 3.8 Hz, 1 H), 3.07 (m, J=8.5, 8.5, 4.2 Hz, 1 H), 3.35 (dd, J=13.5, 3.5 Hz, 1 H), 3.92-4.04 (m, 2 H), 4.07-4.16 (m, 1 H), 4.19 (d, J=11.6 Hz, 1 H), 7.01-7.05 (m, 1 H), 7.07 (d, J=2.8 Hz, 1 H), 7.33 (d, J=5.0 Hz, 1 H), 7.39-7.47 (m, 2 H), 7.48-7.56 (m, 1 H), 8.04 (d, J=7.2 Hz, 2 H), 11.25 (br. s, 1 H).
18-(8) Synthesis of (± -N-((4aR*,7aR* -6-(5-fiuoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(thiophen-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
To (±)-N-((4aR*,7aR!i:)-6-(5-fiuoro-4-methyl-6-oxo-l,6-dihydropyrimidin-2-yl)- 7a-(thiophen-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (200 mg, 0.43 mmol) in DMF (0.5 ml) was added K2C03 (88 mg, 0.64 mmol) followed by Mel (0.5 mL, 0.11 mmol, 0.2M in DMF) every 30 min (x4). The reaction mixture was stirred at r.t. for a further 40 min and was then quenched with a saturated aqueous solution of NaHC03, and extracted with EtOAc (x3). The combined organic extracts were washed with brine, dried over Na2S04 and concentrated uder reduced pressure. The residue was purified by silica gel column chromatography (gradient from 30% to 100% EtOAc in Hexanes) to give the title compound as a colorless oil (96 mg).
LCMS : Rt 1.79 min, m/z 484 [M+H]+.
1H NMR (400 MHz, CDC13) δ ppm 2.30 (d, J=2.9 Hz, 3 H), 2.96 (dd, J=13.5, 4.1 Hz, 1 H), 3.07 (m, 1 H), 3.36 (dd, J=13.4, 3.7 Hz, 1 H), 3.95-4.02 (m, 5 H), 4.09 (d, J=12.1 Hz, 1 H), 4.22 (d, J=12.0 Hz, 1 H), 7.04 (dd, J=5.1, 3.6 Hz, 1 H), 7.11 (d, J=2.7 Hz, 1 H), 7.33 (dd, J=5.1, 1.2 Hz, 1 H), 7.39-7.45 (m, 2 H), 7.47-7.51 (m, 1 H), 8.12 (d, J=7.0 Hz, 2 H). 18-(9) Synthesis of (±)-(4aR* aR*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 7a-(thiophen-2-yl)-4,4a,5,6,7 ,7a-hexahydropyrrolor3,4-diri,31thiazin-2-amine
(Example 18)
(±)-N-((4aR*,7aR*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- (thiophen-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l ,3]thiazin-2-yl)benzamide (89 mg, 0.18 mmol) was dissolved in MeOH (1.5 mL). DBU (61 μί, 0.40 mmol) was added, and the solution was heated to reflux for 20h and then concentrated under reduced pressure. H20 was then added, and the solution was extracted with EtOAc (x 3). The combined organic extracts were dried over Na2S04, concentrated under reduced pressure and the residue purified by SCX and silica gel column chromatography
(gradient from 0% to 9% MeOH in DCM) to afford the title compound as a colorless solid (16 mg).
LCMS: Rt 1.19 min, m/z 380 [M+H]+.
1H NMR (600 MHz, CDC13) δ ppm 2.30 (d, J=2.6 Hz, 3 H), 2.83 (dq, J=8.4, 4.2 Hz, 1 H), 2.96 (dd, J=13.1 , 4.5 Hz, 1 H), 3.26 (dd, J=13.1 , 4.0 Hz, 1 H), 3.76-3.81 (m, 1 H), 3.83-3.89 (m, 1 H), 3.96 (s, 3 H), 4.00 (d, J=l 1.1 Hz, 1 H), 4.09 (d, J=l 1.1 Hz, 1 H), 4.25-4.52 (m, 2 H), 6.93-6.96 (m, 1 H), 7.00 (dd, J=5.0, 3.8 Hz, 1 H), 7.23 (dd, J=5.1 , 1.0 Hz, 1 H). Example 19: ( ±)-( 4aR*,7aR*)-7a-cvclohexyl-6-( 5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.l6.l7.l7a-hexahydropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000095_0001
i-(5) 19-(1 ) 19-(2) 19-0)
Figure imgf000095_0002
19-(7) 19-(8) 19-(9) 19-(3) Synthesis of (±)-(3R R*)-fert-butyl 3-(3-benzoylthioureido -3-cvclohexyl-4- (hvdroxymethyl)pyrrolidine- 1 -carboxylate
A solution of tert-butyl 3a,4-dihydro-3H-pyrrolo[3,4-c]isoxazole-5(6H)- carboxylate, i-(5), (2.20 g) in THF (15 ml) and toluene (15 ml) was cooled to -78°C, and boron trifluoride etherate (1.5 mL) followed by cyclohexylmagnesium chloride (6 ml, 2N in diethyl ether) were added dropwise. After stirring for 1 h, ammonium chloride (sat., aq., 10 mL) was added and the reaction mixture was allowed to warm to room temperature. Water (50 mL) was added, and the mixture extracted with EtOAc (2 x 75 mL). The combined organic extracts were dried over MgS04 and evaporated to give an oil (3.45 g) presumed to contain 19-(1). The oil was dissolved in THF (40 mL) and acetic acid (5 mL) was added, followed by zinc powder (2.50 g). After stirring vigorously for 18 h, the mixture was filtered through celite, washing with EtOAc (150 mL). The filtrate was evaporated and NaHC03 (sat., aq., 50 mL) was added. The mixture was extracted with EtOAc (2 x 100 mL), dried over MgS04, and evaporated to afford an oil (2.78 g), presumed to contain 19-(2). The oil was dissolved in DCM (20 mL) before benzoyl isothiocyanate (0.20 mL) was added. After lOmins, the reaction mixture was concentrated to a volume of ~5 mL and purified by silica gel column chromatography (gradient from 0% to 50% EtOAc in hexanes) to afford the title compound, 19-(3) (374 mg).
1H-NMR (400 MHz, CDC13) δ ppm 0.96 - 1.99 (m, 9 H), 1.49 (s, 9 H), 2.69 - 2.93 (m, 2 H), 3.17 - 3.45 (m, 2 H), 3.54 - 3.67 (m, 1 H), 3.70 - 3.84 (m, 2 H), 3.88 - 4.02 (m, 2 H), 7.47 - 7.56 (m, 2 H), 7.58 - 7.66 (m, 1 H), 7.80 - 7.86 (m, 2 H), 8.84 (s, 1 H), 11.24 (br s, 1 H). 19-(4
Figure imgf000096_0001
tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
(±)-(3R*,4R*)-tert-Butyl 3-(3-benzoylthioureido)-3-cyclohexyl-4- (hydroxymethyl)pyrrolidine-l -carboxylate, prepared in preparation example 19-(3), (202 mg) was dissolved in DCM (2mL) and pyridine (0.20 mL) was added. The solution was cooled to -10°C and trifluoromethanesulfonic anhydride (0.12 mL) added dropwise over 30mins. After stirring for 2 h, NaHC03 (sat., aq., 20 mL) was added, and the mixture extracted with DCM (3 x 25 mL). The combined organic extracts were dried over MgS04, evaporated and purified by silica gel column chromatography (gradient from 0% to 40% EtOAc in hexanes) to afford the title compound, 6-(4) (110 mg).
1H-NMR (400 MHz, CDC13) δ ppm 0.92 - 1.24 (m, 4 H), 1.39 (s, 9 H), 1.49 - 1.86 (m, 6 H), 1.91 - 2.02 (m, 1 H), 2.67 - 2.90 (m, 2 H), 3.21 - 3.67 (m, 5 H), 7.29 - 7.45 (m, 3 H), 8.11 (d, J 7.2 Hz, 2 H). 19-(5) Synthesis of (±VN-((4aR* .7aR*V7a-cvclohexyl-4.4a.5.6.7.7a- hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
(±)-(4aR*,7aR*)-tert-butyl 2-benzamido-7a-cyclohexyl-4a,5,7,7a- tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate, prepared in preparation example 19-(4), (110 mg) was dissolved in DCM (2 mL) and trifluoracetic acid (1 mL) was added. After stirring for 90 min, the reaction mixture was evaporated, NaHC03 (sat., aq., 20 mL) was added, and the mixture extracted with EtOAc (2 x 25 mL). The combined organic extracts were dried over MgS04 and evaporated to afford the title compound, 6-(5) (71 mg).
1H-NMR (400 MHz, CDC13) δ ppm 1.06 - 1.36 (m, 5 H), 1.53 - 1.64 (m, 1 H), 1.66 - 1.98 (m, 5 H), 2.70 - 2.90 (m, 2 H), 3.02 - 3.17 (m, 2 H), 3.24 - 3.39 (m, 3 H), 7.37 - 7.45 (m, 2 H), 7.45 - 7.56 (m, 1 H), 8.16 (d, J=7.5 Hz, 2 H). 19-(8) Synthesis of (± -N-((4aR*.7aR'|; -7a-cvclohexyl-6-(5-fiuoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
(±)-N-((4aR*,7aR!i:)-7a-cyclohexyl-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)benzamide, obtained in preparation example 19-(5), (71 mg) was dissolved in DMF (1 mL). lH-Pyrazole-l-carboxamidine hydrochloride (31.0 mg) was added, followed by diisopropylethylamine (30.0 mg) dropwise. After stirring at room temperature for 1 h, the reaction mixture was concentrated to dryness to obtain a solid presumed to contain 6-(6) as a hydrochloride salt. The solid was dissolved in ethanol (2 ml), before ethyl 2-fluoro-3-oxobutanoate (61.2 mg) was added, followed by sodium ethoxide (105 mg). The reaction mixture was stirred at room temperature for 2 h, and then heated to reflux. After a further hour the mixture was cooled, NaHC03 (sat., aq., 25 mL) was added and the mixture was extracted with EtOAc (3 x 25 mL). The combined organic extracts were dried over MgS04, evaporated and purified by silica gel chromatography (0 to 80% EtOAc in DCM), collecting the spot at Rf 0.30 in
EtOAc:DCM 2: 1 , to afford an impure sample of 6-(7) (50 mg). The crude pyrimidone was dissolved in DMF (0.5 mL), and K2C03 (100 mg) was added, followed by methyl iodide (12.6 mg) as a solution in DMF (0.9 mL), portionwise over 1 h. NaHC03 ( sat. aq., lOmL) was then added and the mixture was extracted with 3 x 15mL EtOAc. The combined organic portions were dried over MgS04, evaporated and purified by silica gel column chromatography (gradient from 0% to 40% EtOAc in hexanes) to afford the title compound, 19-(8) (24 mg). 1H-NMR (400 MHz, CDC13) δ ppm 1.02 - 1.41 (m, 5 H), 1.50 - 2.37 (m, 9 H), 2.86 - 3.05 (m, 2 H), 3.37 - 3.46 (m, 1 H), 3.68 - 3.95 (m, 4 H), 3.98 (s, 3 H), 7.36 - 7.50 (m, 3 H), 8.18 (d, J 7.5 Hz, 2 H), 12.38 (br s, 1 H).
19-(9) Synthesis of (±)-(4aR*,7aR*)-7a-cvcloliexyl-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-di n ,31thiazin-2-amine (Example 19)
(±)-N-((4aR*,7aR!i:)-7a-cyclohexyl-6-(5-fiuoro-4-methoxy-6-methylpyrimidin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, obtained in preparation example 19-(8), (24 mg) was dissolved in methanol (1 ml) before 1,8- diazabicycloundec-7-ene (30 mg) was added. The reaction mixture was heated to reflux and stirred for 5 h, then concentrated and purified by silica gel column chromatography (Method G2, gradient from 0% to 40% EtOAc in hexanes) to obtain the title compound, 6-(9) (14.6 mg).
1H-NMR (400 MHz, CDC13) δ ppm 1.01 - 1.31 (m, 4 H), 1.47 - 1.58 (m, 1 H), 1.63 - 1.88 (m, 5 H), 1.95 - 2.04 (m, 1 H), 2.30 (d, J=2.9 Hz, 3 H), 2.53 - 2.65 (m, 1 H), 2.95 (dd, J=12.9, 5.6 Hz, 1 H), 3.23 (dd, J=12.8, 4.3 Hz, 1 H), 3.50 - 3.63 (m, 2 H), 3.70 - 3.79 (m, 2 H), 3.97 (s, 3 H).
Example 20: ( ±)-( 4aR*,7aR*)-7a-cvclopentyl-6-( 5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000098_0001
20-(7) 20-(8) 20-(9) 20-(3) Synthesis of (±W3R R* ert-butyl 3-(3-benzoylthioureido -3-cvclopentyl-4- (hvdroxymethyl)pyrrolidine- 1 -carboxylate
A solution of tert-butyl 3a,4-dihydro-3H-pyrrolo[3,4-c]isoxazole-5(6H)- carboxylate i-(5) (4.13g) in THF (80 ml) was cooled to 0°C, and boron trifluoride etherate (2.6 mL) followed by cyclopentylmagnesium bromide (40 ml, 2N in diethyl ether) were added dropwise. After stirring for 3 h, ammonium chloride (sat., aq., 100 mL) was added and the reaction mixture was allowed to warm to room temperature. Water (100 mL) was added, and the mixture extracted with EtOAc (2 x 200 mL). The combined organic extracts were dried over MgS04 and evaporated to give an oil (8.24 g). The oil was purified by silica gel chromatography, collecting fractions containing molecular weight 282 on LCMS analysis, to afford a crude sample presumed to contain 20-(l) (3.30 g). The oil was dissolved in THF (20 mL) and acetic acid (2 mL) was added, followed by zinc powder (1.00 g). After stirring vigorously for 16 h, the mixture was filtered through celite, washing with MeOH (100 mL). The filtrate was evaporated and NaHC03 (sat., aq., 50 mL) was added. The mixture was extracted with EtOAc (2 x 75 mL), dried over MgS04, and evaporated to afford an oil (3.29 g), presumed to contain 20-(2). The oil was dissolved in DCM (25 mL) before benzoyl isothiocyanate (1.5 mL) was added. After 18 h, the reaction mixture was added to NaHC03 (sat., aq., 100 mL) and the mixture was extracted with EtOAc (2 x 100 mL). The combined organic extracts were dried over MgS04, evaporated and purified by silica gel column chromatography (gradient from 0% to 50% EtOAc in hexanes) to afford the title compound, 20-(3) (980 mg).
1H-NMR (400 MHz, CDC13) δ ppm 1.37 - 1.94 (m, 7 H), 1.50 (s, 9 H), 2.61 - 2.83 (m, 2 H), 3.29 - 4.04 (m, 7 H), 7.48 - 7.60 (m, 2 H), 7.60 - 7.70 (m, 1 H), 7.78 - 7.90 (m, 2 H), 8.86 (s, 1 H), 11.24 (br s, 1 H).
20-(4) Synthesis of (±)-(4aR*,7aR*)-fert-butyl 2-benzamido-7a-cvclopentyl-4a,5,7,7a- tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
Synthesized from (±)-(3R*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3- cyclopentyl-4-(hydroxymethyl)pyrrolidine-l -carboxylate 20-(3) (725 mg) by an analogous procedure to that used in preparation example 19-(4), affording 359 mg. LCMS (method A2 Short_20_95): Rt 1.62 min, m/z 430 [M+H]+.
20-(5) Synthesis of (±VN-(Y4aR*.7aR* -7a-cvclopentyl-4.4a.5.6.7.7a- hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Synthesized from (±)-(4aR*,7aR*)-tert-butyl 2-benzamido-7a-cyclopentyl- 4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate 20-(5) (359 mg) procedure analogous to preparation example 19-(5) affording 272 mg of crude product, which was used without purification or analysis.
20-(8) Synthesis of (± -N-((4aR*,7aR* -7a-cvclopentyl-6-(5-fiuoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- vDbenzamide
Synthesized from (±)-N-((4aR*,7aR*)-7a-cyclopentyl-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (272 mg, crude) by an analogous procedure to that used in preparation example 19-(8), affording 51 mg.
1H-NMR (400 MHz, CDC13) δ ppm 1.40 - 1.68 (m, 4 H), 1.69 - 1.81 (m, 2 H), 1.82 -
1.99 (m, 2 H), 2.23 - 2.35 (m, 4 H), 2.73 - 2.89 (m, 1 H), 3.02 (dd, J=13.4, 5.1 Hz, 1 H),
3.40 (dd, J=13.4, 4.0 Hz, 1 H), 3.70 - 3.95 (m, 4 H), 3.99 (s, 3 H), 7.34 - 7.43 (m, 2 H), 7.43 - 7.52 (m, 1 H), 8.13 - 8.22 (m, 2 H) 20-(9) Synthesis of (± -(4aR*,7aR* -7a-cvclopentyl-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2-amine (Example 20)
Synthesized from (±)-N-((4aR*,7aR!i:)-7a-cyclopentyl-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide, 20-(8), (69 mg) by a procedure analogous to preparation example 19-(9), affording 5 lmg as a white powder.
1H-NMR (400 MHz, CDC13) δ ppm 1.26 - 1.37 (m, 2 H), 1.46 - 1.57 (m, 2 H), 1.57 - 1.66 (m, 2 H), 1.66 - 1.80 (m, 2 H), 2.06 - 2.16 (m, 1 H), 2.29 (d, J=2.9 Hz, 3 H), 2.34 -
2.41 (m, 1 H), 2.94 (dd, J=12.8, 6.8 Hz, 1 H), 3.16 (dd, J=12.8, 3.9 Hz, 1 H), 3.49 - 3.63 (m, 2 H), 3.71 - 3.82 (m, 2 H), 3.96 (s, 3 H), 4.27 (br. s., 2 H)._
LCMS (method A2 Short_20_95): Rt 0.97 min, m/z 366 [M+H]+.
Example 21: f±)-f4aR*,7aR*)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- ( tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7 a-hexahydropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine
Figure imgf000101_0001
21 -(12) 21 -(1 1 ) 21 -(10) 21-(1) Synthesis of 2-bromo-l-(tetrahvdro-2H-pyran-4-yl)ethanone
Tetrahydro-2H-pyran-4-carboxylic acid (3 g, 23.052 mmol) was dissolved in dry DCM (20 mL) and one drop of DMF added. The reaction mixture was cooled to 0°C before Oxalyl chloride (2.212 ml, 25.357 mmol) was added dropwise and the reaction mixture stirred at rt under nitrogen for 2 hours. Solvent was removed in vacuo after this time, before the residue was redissolved in DCM (20 mL) and the resulting solution was added dropwise to a solution of Trimethylsilyldiazomethane (20.75 ml, 41.493 mmol) (2M in hexane) at -10°C. The reaction mixture was stirred at rt overnight. The reaction mixture was cooled to -10°C again after this time before aqueous Hydrobromic acid (2.4 ml, .00 mmol) (48% in water) was added dropwise. The reaction mixture was allowed to stir at rt for 1 h before being diluted with sat. NaHC03 (aq) and brine. The layers were separated and the aqueous extracted a further 2 times with DCM. The combined organics were dried over MgS04, filtered and solvent removed in vacuo to afford crude material as a brown oil. Crude material was purified by column
chromatography (normal phase, 50g, Biotage SNAP cartridge KP-Sil, 50mL per min, gradient 0% to 60% EtOAc in n-hexane 10CV) to afford the title compound (3.413 g, 16.48 mmol, 71.5 % yield) as yellow crystals.
LCMS (Acquity UPLC CI 8, 2.1 x 50mm, 1.7mm, 0.6mL per min, 40°C, gradient 5- 95% MeCN in water (0.1% formic acid) over 1.50min - held for 0.50min). Retention time 1.05min, ES+: 207.40, 209.40 [MH]+.
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.69 - 1.87 (m, 4H) 2.94 - 3.04 (m, 1H) 3.46 (td, J=11.31, 3.06 Hz, 2H) 3.96 (s, 2H) 3.98 -4.05 (m, 2H). 21 -(2) Synthesis of 2-(allyl(2,4-dimethoxybenzyl)amino)-l-(tetrahydro-2H-pyran-4- vDethanone
Starting from N-(2,4-dimethoxybenzyl)prop-2-en-l -amine, obtained in example 17-(1) and 2-bromo-l-(tetrahydro-2H-pyran-4-yl)ethanone, 21-(1), compound 21 -(2) (2.33 g) was synthesised following an analogous procedure to that for preparing compound 17-(2) as described in Example 17.
LCMS Retention time 1.03min, m/z 334.61 [MH]+.
1H NMR (400 MHz, CDC -d) δ ppm 1.57 - 1.63 (m, 4 H) 2.73 - 2.86 (m, 1 H) 3.18 (br. s., 2 H) 3.28 (br. s., 2 H) 3.33 - 3.42 (m, 2 H) 3.65 (br. s., 2H) 3.80 (s, 3 H) 3.81 (s, 3 H) 3.93 - 3.99 (m, 2 H) 5.11 - 5.27 (m, 2 H) 5.81 - 6.00 (m, 1 H) 6.40 - 6.50 (m, 2 H) 7.22 (d, J=7.95 Hz, 1 H).
21 -(3) Synthesis of 2-(allyl(2,4-dimethoxybenzyl)amino)- 1 -(tetrahvdro-2H-pyran-4- vDethanone oxime
Starting from 2-(allyl(2,4-dimethoxybenzyl)amino)- 1 -(tetrahydro-2H-pyran-4- yl)ethanone, 21 -(2), compound 2-(allyl(2,4-dimethoxybenzyl)amino)- 1 -(tetrahydro-2H- pyran-4-yl)ethanone oxime (2.083 g) was synthesised following an analogous procedure to that for preparing compound 17-(3) as described in Example 17.
LCMS Retention time 1.01-1.05 min, ES+: 349.62 [MH]+. 21-(4 Synthesis of (±)-(3aR'|;,6aR'|; -5-(2,4-dimethoxybenzvn-6a-(tetrahvdro-2H- pyran-4-yl)hexahvdro-lH-pyrrolor3,4-c1isoxazole
Starting from 2-(allyl(2,4-dimethoxybenzyl)amino)- 1 -(tetrahydro-2H-pyran-4- yl)ethanone oxime, 21-(3), compound (±)-(3aR*,6aR*)-5-(2,4-dimethoxybenzyl)-6a- (tetrahydro-2H-pyran-4-yl)hexahydro-lH-pyrrolo[3,4-c]isoxazole (1.085 g) was synthesised following an analogous procedure to that for preparing compound 17-(4) as described in Example 17.
LCMS Retention time 0.91min, ES+: 349.62 [MH]+.
21 -(5) Synthesis of (±)-((3R*.4R'|; -4-amino-l-(2,4-dimethoxybenzvn-4-(tetrahvdro- 2H-pyran-4-yl)pyrrolidin-3-yl)methanol
Starting from (±)-(3aR*,6aR!i:)-5-(2,4-dimethoxybenzyl)-6a-(tetrahydro-2H- pyran-4-yl)hexahydro-lH-pyrrolo[3,4-c]isoxazole, 21-(4), compound (±)-((3R*,4R*)-4- amino- 1 -(2,4-dimethoxybenzyl)-4-(tetrahydro-2H-pyran-4-yl)pyrrolidin-3-yl)methanol (630 mg) was synthesised following an analogous procedure to that for preparing compound 17-(5) as described in Example 17.
LCMS Retention time 0.73min, ES+: 351.63 [MH]+.
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.43 - 1.54 (m, 3 H) 1.55 - 1.66 (m, 1 H) 1.73 (d, J=12.72 Hz, 1 H) 2.11 - 2.21 (m, 1 H) 2.45 - 2.54 (m, 3 H) 2.66 (br. s, 2 H) 2.66 (dd, J=9.35, 4.22 Hz, 1 H) 3.30 - 3.44 (m, 2 H) 3.56 (d, J=3.55 Hz, 2 H) 3.68 (d, J=5.99 Hz, 2 H) 3.81 (d, J=6.11 Hz, 6 H) 4.04 (d, J=12.35 Hz, 2 H) 6.41 - 6.51 (m, 2 H) 7.20 (d, J=8.07 Hz, 1 H). 21-(6 Synthesis of (±)-N-(((3R'|;.4R'|; -l-(2,4-dimethoxybenzvn-4-(hvdroxymethvn-3- (tetrahvdro-2H-pyran-4-yl)pyrrolidin-3-yl)carbamothioyl)benzamide
Starting from (±)-((3R* ,4R*)-4-amino- 1 -(2,4-dimethoxybenzyl)-4-(tetrahydro- 2H-pyran-4-yl)pyrrolidin-3-yl)methanol, 21-(5), compound (±)-N-(((3R*,4R!i:)-l-(2,4- dimethoxybenzyl)-4-(hydroxymethyl)-3-(tetrahydro-2H-pyran-4-yl)pyrrolidin-3- yl)carbamothioyl)benzamide (648 mg) was synthesised following an analogous procedure to that for preparing compound 17-(6) as described in Example 17.
LCMS Retention time 1.20 min, ES+: 514.65 [MH]+.
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.39 - 1.50 (m, 1 H) 1.53 - 1.63 (m, 3 H) 1.72 (d, J=12.47 Hz, 1 H) 2.42 (br. s, 1 H) 2.68 (br. s., 1 H) 2.81 (br. s., 1 H) 3.15 (br. s, 1 H) 3.28 (br. s., 1 H) 3.35 - 3.48 (m, 3 H) 3.53 - 3.69 (m, 3 H) 3.82 (s, 6 H) 3.84 - 3.93 (m, 2
H) 4.02 (d, J=10.76 Hz, 2 H) 6.41 - 6.52 (m, 2 H) 7.24 (br. s., 1 H) 7.52 (t, J=7.50 Hz, 2 H) 7.63 (t, J=7.34 Hz, 1 H) 7.82 - 7.87 (m, 2 H) 8.81 (s, 1 H).
21 -(7) Synthesis of (±)-N-((4aR*,7aR'|; -6-(2,4-dimethoxybenzvn-7a-(tetrahvdro-2H- pyran-4-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Starting from (±)-N-(((3R* ,4R*)- 1 -(2,4-dimethoxybenzyl)-4-(hydroxymethyl)- 3-(tetrahydro-2H-pyran-4-yl)pyrrolidin-3-yl)carbamothioyl)benzamide, 21 -(6), compound (±)-N-((4aR*,7aR!i:)-6-(2,4-dimethoxybenzyl)-7a-(tetrahydro-2H-pyran-4- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (362 mg, 81% pure) was synthesised following an analogous procedure to that for preparing compound 17-(7) as described in Example 17.
LCMS Retention time 1.27min, ES+: 496.66 [MH]+.
21 -(8) Synthesis of (±)-N-((4aR*,7aR* -7a-(tetrahvdro-2H-pyran-4-vn-4,4a,5, 6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Starting from (±)-N-((4aR* ,7aR*)-6-(2,4-dimethoxybenzyl)-7a-(tetrahydro-2H- pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 21-(7), compound (±)-N-((4aR*,7aR!i:)-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5, 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide (134 mg) was synthesised following an analogous procedure to that for preparing compound 17-(8) as described in Example 17.
LCMS Retention time l .OOmin, ES+: 346.57 [MH]+.
1H NMR (400 MHz, CDCl3-< ) δ ppm 1.52 - 1.91 (m, 6 H) 2.65 - 2.78 (m, 1 H) 2.87 (dd, J=13.4, 4.7 Hz, 1 H) 3.02 - 3.18 (m, 2 H) 3.24 - 3.34 (m, 2H) 3.39 (tt, J=11.6, 2.5 Hz, 2 H) 4.02 - 4.12 (m, 2 H) 7.38 - 7.46 (m, 2 H) 7.46 - 7.53 (m, 1 H) 8.02 - 8.25 (m, 2 H).
21 -(9) Synthesis of (±)-N-((4aR* ,7aR*)-6-carbamimidoyl-7a-(tetrahydro-2H-pyran-4- yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride Starting from (±)-N-((4aR* ,7aR*)-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5 , 6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 21-(8), compound £±)-N- ((4aR*,7aR!i:)-6-carbamimidoyl-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride (164 mg) was synthesised following an analogous procedure to that for preparing compound 17-(9) as described in Example 17.
LCMS Retention time 0.98 min, ES+: 388.61 [MH]+.
21-(10) Synthesis of (±)-N-( (4aR* ,7aR*V 6-( 5 -fluoro-4-hvdroxy-6-methylpyrimidin-2- yl)-7a-(tetrahvdro-2H-pyran-4-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
Starting from (±)-N-((4aR* ,7aR*)-6-carbamimidoyl-7a-(tetrahydro-2H-pyran-4- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride, 21 -(10), compound (±)-N-((4aR*,7aR!i:)-6-(5-fiuoro-4-hydroxy-6-methylpyrimidin-2- yl)-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide (148 mg) was synthesised following an analogous procedure to that for preparing compound 17-(10) as described in Example 17.
LCMS Retention time 1.17 min, ES+: 472.62 [MH]+. 1H NMR (400 MHz, CDCl3-< ) δ ppm 1.62 - 1.74 (m, 3 H) 1.87 (d, J=14.9 Hz, 1 H) 1.96 (br. s, 1 H) 2.21 (d, J=3.4 Hz, 3 H) 2.89 (br. s, 1 H) 3.03 (dd, J=13.2, 3.3 Hz, 1 H) 3.34 - 3.47 (m, 3 H) 3.71 - 3.87 (m, 3 H) 3.88 - 3.98 (m, 1 H) 4.05 - 4.12 (m, 2 H) 7.36 - 7.45 (m, 2 H) 7.45 - 7.52 (m, 1 H) 8.10 (d, J=6.8 Hz, 2 H).
21-(11) Synthesis of (±)-2-((4aR*,7aR'|; -2-amino-7a-(tetralivdro-2H-pyran-4-vn- 4a,5 ,7,7a-tetrahydropyrrolor3,4-din ,31thiazin-6(4H)-yl)-5-fluoro-6-methylpyrimidin-4- ol
Starting from (±)-N-((4aR*,7aR!i:)-6-(5-fluoro-4-hydroxy-6-methylpyrimidin-2- yl)-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide, 21-(10), compound (±)-2-((4aR*,7aR!i:)-2-amino-7a-(tetrahydro-2H- pyran-4-yl)-4a,5 ,7,7a-tetrahydropyrrolo[3 ,4-d] [ 1 ,3]thiazin-6(4H)-yl)-5 -fluoro-6- methylpyrimidin-4-ol (1 18 mg) was synthesised following an analogous procedure to that for preparing compound 17-(11) as described in Example 17.
LCMS Retention time 1.59min, 100%, ES+: 482.63 [MH]+.
21-(12) Synthesis of f--:)-(4aR'|;,7aR'|;)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 7a-(tetrahvdro-2H-pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- amine (Example 21)
Starting from (±)-2-((4aR*,7aR!i:)-2-amino-7a-(tetrahydro-2H-pyran-4-yl)-
4a,5 ,7,7a-tetrahydropyrrolo[3 ,4-d] [ 1 ,3]thiazin-6(4H)-yl)-5 -fluoro-6-methylpyrimidin-4- ol, 21-(11), compound (±)-(4aR*,7aR!i:)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(tetrahydro-2H-pyran-4-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- amine ) was synthesised following an analogous procedure to that for preparing compound 13-(9) as described in Example 13.
LCMS Retention time 1.04 min, 100%, ES+: 382.58 [MH]+.
1H NMR (400 MHz, DMSO- 6) δ ppm 1.24 (ddd, J=24.8, 12.7, 3.5 Hz, 1 H) 1.39 - 1.68 (m, 3 H) 1.73 (d, J=12.5 Hz, 1 H) 2.20 (d, J=2.8 Hz, 3 H) 2.39 - 2.48 (m, 1 H) 2.93 (dd, J=12.6, 5.3 Hz, 1 H) 3.17 (d, J=5.3 Hz, 1 H) 3.19 - 3.29 (m, 2 H) 3.38 - 3.47 (m, 2 H) 3.47 - 3.68 (m, 2 H) 3.83 - 3.89 (m, 2 H) 3.90 (s, 3H) 5.69 (br. s, 2 H). Example 22: (±)-3- 4aR*,7aS*)-2-amino-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-7a-yl)-4- fluorobenzonitrile 22-(10)
Figure imgf000106_0001
22-(10) 22-(l) Synthesis of (±)-(3aR*,6aS*)-fert-butyl 6a-(5-bromo-2-fluorophenyl)tetrahydro- lH-pyrrolo[3,4-clisoxazole-5(3H)-carboxylate
To a stirred solution of 4-bromo-l-fluoro-2-iodobenzene (10.96 g) in THF (30 mL) and toluene (150 mL) at -78°C was added n-butyl lithium (22.7 mL, 1.6 N in hexanes) over 20 mins. After stirring for 40 mins at -78°C, boron trifluoride etherate (4.60 mL) was added dropwise over 2 mins, followed by tert-butyl 3a,4-dihydro-3H- pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate (4.83 g) as a solution in THF (30 mL) over 5 mins. After stirring for a further 2 hrs at -78°C, the reaction mixture was quenched by the addition of NH4C1 (sat., aq., 50 mL) and allowed to warm to room temperature, water (100 mL) was then added and the mixture extracted with EtOAc (3 x 150 mL). The combined organic portions were dried over MgS04, evaporated and purified by flash column chromatography (silica gel, 0 to 20% EtOAc in hexanes) to afford (±)- (3aR,6aS)-tert-butyl 6a-(5-bromo-2-fluorophenyl)tetrahydro-lH-pyrrolo[3,4- c]isoxazole-5(3H)-carboxylate (5.71 g). 1H NMR (400 MHz, CDC13) δ ppm 1.49 (s, 9 H), 3.22 - 3.33 (m, 1 H), 3.45 - 3.59 (m, 2 H), 3.60 - 3.80 (m, 3 H), 4.49 (t, J=8.4 Hz, 1 H), 6.96 (dd, J=l 1.0, 8.7 Hz, 1 H), 7.40 (ddd, J=8.6, 4.5, 2.7 Hz, 1 H), 8.06 (dd, J=7.0, 2.5 Hz, 1 H).
22-(2) Synthesis of (±V(3S R* ert-butyl 3-amino-3-(5-bromo-2-fluorophenyiy4- (hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a stirred solution of (±)-(3aR*,6aS*)-tert-butyl 6a-(5-bromo-2- fluorophenyl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (5.71 g) in THF (100 mL) was added acetic acid (5 mL) followed by powdered zinc (5.0 g) portionwise over 5 mins. After stirring at room temperature for 18 hrs, further portions of acetic acid (2.0 mL) and zinc (2.0 g) were added. After a further 24 hrs, the reaction mixture was filtered through celite®, washing with methanol (500 mL), and evaporated. NaHC03 (sat., aq., 250 mL) was then added, and the mixture was extracted with EtOAc (3 x 250 mL). The combined organic portions were dried over MgS04 and evaporated to afford (±)-(3S*,4R*)-tert-butyl 3-amino-3-(5-bromo-2-fluorophenyl)-4- (hydroxymethyl)pyrrolidine-l -carboxylate (5.22 g).
1H NMR (400 MHz, CDC13) δ ppm 1.50 (s, 9 H), 2.75 - 2.88 (br. s., 1 H), 3.44 - 3.69 (m, 3 H), 3.76 - 4.02 (m, 3 H), 7.00 (dd, J=l 1.9, 8.7 Hz, 1 H), 7.43 (ddd, J=8.6, 4.2, 2.4 Hz, 1 H), 7.63 (dd, J=7.3, 2.3 Hz, 1 H).
22-(3 Synthesis of (±y(3S*,4R*Vfert-butyl 3-(3-benzoylthioureido -3-(5-bromo-2- fluorophenyl)-4-(hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a stirred solution of (±)-(3S*,4R*)-tert-butyl 3-amino-3-(5-bromo-2- fluorophenyl)-4-(hydroxymethyl)pyrrolidine-l -carboxylate (5.24 g) in DCM (50 mL) was added benzoyl isothiocyanate (2.20 mL) dropwise. After stirring at room
temperature for 3 days, the reaction mixture was concentrated to ca. 10 mL and purified directly by flash column chromatography (silica gel, 0 to 50% EtOAc in hexanes) to afford (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(5-bromo-2-fluorophenyl)-4- (hydroxymethyl)pyrrolidine-l -carboxylate (6.99 g) as a foam.
1H NMR (400 MHz, CDC13) δ ppm 1.53 (m, 9 H), 2.98 - 3.14 (m, 1 H), 3.36 - 3.60 (m, 2 H), 4.05 (dd, J=l 1.7, 7.4 Hz, 1 H), 4.09 - 4.15 (m, 1 H), 4.58 (d, J=12.3 Hz, 1 H), 6.95 (dd, J=l 1.6, 8.7 Hz, 1 H), 7.42 (ddd, J=8.7, 4.2, 2.4 Hz, 1 H), 7.46 - 7.56 (m, 2 H), 7.56 - 7.69 (m, 2 H), 7.75 - 7.92 (m, 2 H), 8.87 (s, 1 H), 11.84 (br. s., 1 H).
22-(4 Synthesis of (± -(4aR*,7aS* -fert-butyl 2-benzamido-7a-(5-bromo-2- fluorophenyl)-4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate Synthesized from (±)-(3S*,4*R)-tert-butyl 3-(3-benzoylthioureido)-3-(5-bromo- 2-fluorophenyl)-4-(hydroxymethyl)pyrrolidine-l-carboxylate 22-(3) (3.85 g) by a procedure analogous to preparation example l-(4), affording 3.20 g
LCMS (method A2 Short_20_95) RT 1.76min, m/z 534/536 [M+H]+.
22-(5) Synthesis of (± -N-((4aR*,7aS'|; -7a-(5-bromo-2-fluorophenvn-4,4a,5,6JJa- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Synthesized from (±)-(4aR*,7aS*)-tert-butyl 2-benzamido-7a-(5-bromo-2- fluorophenyl)-4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate (3.20 g) by a procedure analogous to preparation example l-(5), affording 2.59 g.
1H NMR (400 MHz, CDC13) δ ppm 2.85 (dd, J=13.6, 3.9 Hz, 1 H), 3.13 - 3.23 (m, 1 H), 3.24 - 3.34 (m, 2 H), 3.41 - 3.54 (m, 2 H), 3.67 - 3.77 (m, 1 H), 7.03 (dd, J=l 1.7, 8.6 Hz, 1 H), 7.38 - 7.61 (m, 5 H), 8.10 (br. s., 2 H) 22-(6) Synthesis of (± -N-((4aR*,7aS'|; -7a-(5-bromo-2-fluorophenvn-6- carbamimidoyl-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
Synthesized from (±)-N-((4aR*,7aS*)-7a-(5-bromo-2-fluorophenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 22-(5) (2.59 g) by a procedure analogous to preparation example l-(6), affording 4.75 g (approx. purity 65%).
LCMS (method A2 Short_20_95) RT 1.02min, m/z 478/478 [M+H]+.
22-(7) Synthesis of (± -N-((4aR*,7aS'|; -7a-(5-bromo-2-fluorophenvn-6-(5-fiuoro-4- hvdroxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide
Synthesized from crude (±)-N-((4aR*,7aS*)-7a-(5-bromo-2-fluorophenyl)-6- carbamimidoyl-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride 22-(6) (4.71 g, approx. purity 65%) by a procedure analogous to preparation example l-(7), affording 2.31 g.
LCMS (method A2 Short_20_95) RT 1.34min, m/z 560/562 [M+H]+.
22-(8) Synthesis of (±VN-(Y4aR* ,7aS * 7a-(5 -bromo-2-fluorophenvn-6-(5 -fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- vDbenzamide
Synthesized from (±)-N-((4aR*,7aS!i:)-7a-(5-bromo-2-fiuorophenyl)-6-(5-fluoro- 4-hydroxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin- 2-yl)benzamide 22-(7) (2.31 g) by a procedure analogous to preparation example l-(8), affording 1.16 g.
LCMS (method A2 Short_20_95) RT 1.84min, m/z 574/576 [M+H]+. 22-(9) Synthesis of (± -N-((4aR*,7aS'|; -7a-(5-cvano-2-fluorophenvn-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4-din,31thiazin-2- vDbenzamide
To a solution of (±)-N-((4aR*,7aS!i:)-7a-(5-bromo-2-fiuorophenyl)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide 22-(8) (70 mg) in NMP (1 mL) was added Zn(CN)2 (50 mg) and tetrakis(triphenylphosphine)palladium(0) (10 mg). The solution was stirred under microwave irradiation for 1 hr at 120°C. The reaction mixture was then cooled, diluted with EtOAc (50 mL) and extracted with water (3 x 10 mL). The combined organic portions were dried over MgS04, evaporated, and purified by flash column
chromatography (0 to 35% EtOAc in hexanes) to afford (±)-N-((4aR*,7aS!i:)-7a-(5- cyano-2-fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 22-(9) (31 mg).
LCMS (method A2 Short_20_95) RT 1.64min, m/z 521 [M+H]+ 22-(10 Synthesis of (± -3-((4aR*JaS'|; -2-amino-6-(5-fiuoro-4-methoxy-6- methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-7a-yl)-4- fluorobenzonitrile
Synthesized from (±)-N-((4aR*,7aS!i:)-7a-(5-cyano-2-fiuorophenyl)-6-(5-fluoro- 4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin- 2-yl)benzamide 22-(9) (31 mg) by a procedure analogous to preparation example l-(9), using aminosilica for purification, affording 10 mg.
1H NMR (400 MHz, CDC13) δ ppm 2.32 (d, J=2.9 Hz, 3 H), 2.98 - 3.03 (m, 2 H), 3.16 - 3.24 (m, 1 H), 3.74 - 3.91 (m, 3 H), 3.98 (s, 3 H), 4.29 (d, J=11.4 Hz, 1 H), 4.62 (br. s., 2 H), 7.20 (dd, J=11.6, 8.4 Hz, 1 H), 7.59 - 7.68 (m, 1 H), 7.70 - 7.81 (m, 1 H).
LCMS (method A2 Short_20_95) RT 0.97min, m/z 417 [M+H]+ Example 23: f±)-f4aR*,7aS*)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a- fS-fisopropoxymethvDphenvD^^a^^J a-hexahvdropyrroloiS^-dl il^lthiazin^- amine, 23-(9)
Figure imgf000110_0001
23-(8) 23-(9) 23-(10)
23-(l) Synthesis of 2-bromo-l-fluoro-4-(isopropoxymethyl)benzene
Sodium hydride (0.60 g, 60% in mineral oil) was added portionwise over 10 mins to propan-2-ol (50 ml). After stirring for 15 mins, 2-bromo-4-(bromomethyl)-l - fluorobenzene (2.0 ml) was added dropwise over lOmins, and the reaction mixture was allowed to stir for 3 days. The mixture was then diluted with water (50 mL) and brine (100 mL), and extracted with EtOAc (2 x 150 mL). The combined organic portions were dried over MgS04, evaporated and purified by flash column chromatography (silica gel, 0 to 5% EtOAc in hexanes) to afford 2-bromo-l-fluoro-4- (isopropoxymethyl)benzene (2.96 g).
1H NMR (400 MHz, CDC13) δ ppm 1.23 (d, J=6.1 Hz, 6 H), 3.69 (septet, J=6.1 Hz, 1
H), 4.46 (s, 2 H), 7.09 (t, J=8.4 Hz, 1 H), 7.18 - 7.32 (m, 1 H), 7.56 (dd, J=6.6, 2.1 Hz, 1 H) 23 -(2) Synthesis of (±W3aR*.6aS* ert-butyl 6a-(2-fluoro-5- (isopropoxymethyl)phenyl)tetrahvdro-lH-pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
To a stirred solution of 2-bromo-l-fluoro-4-(isopropoxymethyl)benzene, 23-(l), (827 mg) in THF (2 mL) and toluene (10 mL) at -78°C was added n-butyl lithium (2.0 mL, 1.6 N in hexanes) dropwise over 10 mins. After stirring for 20 mins at -78°C, boron trifluoride etherate (0.40 mL) was added dropwise, followed by tert-butyl 3a,4-dihydro- 3H-pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, i-(5), (418 mg) as a solution in THF (3 mL). After stirring for a further 90 mins at -78°C, the reaction mixture was quenched by the addition of NH4C1 (sat., aq., 10 mL) and allowed to warm to room temperature. Brine (20 mL) was then added and the mixture extracted with EtOAc (3 x 30 mL). The combined organic portions were dried over MgS04, evaporated and purified by flash column chromatography (silica gel, 0 to 50% EtOAc in hexanes) to afford (±)- (3aR* ,6aS *)-tert-butyl 6a-(2-fluoro-5-(isopropoxymethyl)phenyl)tetrahydro- 1 H- pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (372 mg) as an oil.
1H NMR (400 MHz, CDC13) δ ppm 1.23 (d, J=6.1 Hz, 6 H), 1.48 (s, 9 H), 3.26 - 3.35 (m, 1 H), 3.48 - 3.61 (m, 2 H), 3.61 - 3.82 (m, 4 H), 4.34 - 4.51 (m, 3 H), 5.12 (br. s., 1 H), 7.05 (dd, J=11.4, 8.4 Hz, 1 H) 7.24 - 7.35 (m, 1 H), 7.75 - 7.87 (m, 1 H)
23-(3) Synthesis of (±W3S R* ert-butyl 3-amino-3-(2-fluoro-5- (isopropoxymethyl)phenyl)-4-(hvdroxymethyl)pyrrolidine-l-carboxylate
To a stirred solution of (±)-(3aR*,6aS*)-tert-butyl 6a-(2-fluoro-5- (isopropoxymethyl)phenyl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate, 23-(2), (1.20 g) in THF (10 mL) and acetic acid (1 mL) was added powdered zinc (1.0 g). After stirring at room temperature for 18 hrs, a further portion of zinc (1.0 g) and more acetic acid (1 mL) were added. After stirring for a further 24 hrs, the reaction mixture was filtered through celite®, washing with MeOH (100 mL) and evaporated. NaHCC"3 (sat., aq., 50 mL) was then added, and the mixture was extracted with EtOAc (2 x 75 mL). The combined organic portions were dried over MgS04 and evaporated to afford (±)-(3S*,4R*)-tert-butyl 3-amino-3-(2-fluoro-5-(isopropoxymethyl)phenyl)-4- (hydroxymethyl)pyrrolidine- 1 -carboxylate ( 1.14 g) .
1H NMR (400 MHz, CDC13) δ ppm 1.23 (d, J=6.1 Hz, 6 H), 1.49 (s, 9 H), 2.76 - 2.91 (m, 1 H), 3.45 - 3.64 (m, 3 H), 3.70 (septet, J= 6.1 Hz, 1 H), 3.84 (d, J=4.8 Hz, 2 H), 3.87 - 4.03 (m, 1 H), 4.48 (s, 2 H), 7.08 (dd, J=12.3, 8.3 Hz, 1 H), 7.28 - 7.46 (m, 2 H). 23-(4 Synthesis of (±W3S*.4R* ert-butyl 3-(3-benzoylthioureido -3-(2-fluoro-5- (isopropoxymethyl)phenyl)-4-(hvdroxymethyl)pyrrolidine-l -carboxylate
To a stirred solution of (±)-(3S*,4R*)-tert-butyl 3-amino-3-(2-fluoro-5- (isopropoxymethyl)phenyl)-4-(hydroxymethyl)pyrrolidine-l-carboxylate, 23-(3), (1.14 g) in DCM (5 mL) was added benzoyl isothiocyanate (0.50 mL) dropwise. After stirring at room temperature for 2 hrs, the reaction mixture was concentrated to ca. 2 mL and purified directly by flash column chromatography (silica gel, 0 to 50% EtOAc in hexanes) to afford (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(2-fluoro-5- (isopropoxymethyl)phenyl)-4-(hydroxymethyl)pyrrolidine- 1 -carboxylate ( 1.47 g).
1H NMR (400 MHz, CDC13) δ ppm 1.22 (d, J=6.1 Hz, 6 H), 1.51 (br s, 9 H), 2.98 - 3.18 (m, 1 H), 3.30 - 3.59 (m, 2 H), 3.68 (septet, J=6.1 Hz, 1 H), 3.85 - 4.21 (m, 3 H), 4.44 - 4.57 (m, 3 H), 6.96 - 7.1 1 (m, 1 H), 7.28 - 7.36 (m, 1 H), 7.39 - 7.58 (m, 3 H), 7.58 - 7.68 (m, 1 H), 7.74 - 7.96 (m, 2 H), 8.84 (s, 1 H), 11.80 (br s, 1 H).
23-(5 Synthesis of (±y(4aR*,7aS* -fert-butyl 2-benzamido-7a-(2-fluoro-5-
(isopropoxymethyl)phenyl)-4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)- carboxylate
Synthesized from (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(2-fluoro- 5 -(isopropoxymethyl)phenyl)-4-(hydroxymethyl)pyrrolidine-l -carboxylate, 23 -(4), (1.05 g) by a procedure analogous to preparation example l-(4), affording 872 mg. LCMS (method A2 Short_20_95): Rt 1.78 min, m/z 528 [M+H]+.
23 -(6) Synthesis of (±)-N-((4aR* ,7aS *)-7a-(2-fluoro-5 -(isopropoxymethyOphenyl)- 4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Synthesized from (±)-(4aR*,7aS*)-tert-butyl 2-benzamido-7a-(2-fluoro-5- (isopropoxymethyl)phenyl)-4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)- carboxylate, 23-(5), (248 mg) by a procedure analogous to preparation example l-(5), affording 697mg.
1H NMR (400 MHz, CDC13) δ ppm 1.21 (d, J=6.1 Hz, 6 H), 2.84 (dd, J=13.6, 3.7 Hz, 1 H), 3.12 - 3.26 (m, 1 H), 3.31 - 3.43 (m, 2 H), 3.47 - 3.58 (m, 2 H), 3.68 (septet, J=6.1 Hz, 1 H), 3.76 - 3.88 (m, 1 H), 4.48 (s, 2 H), 7.11 (dd, J=12.2, 8.3 Hz, 1 H), 7.28 - 7.57 (m, 5 H), 7.98 - 8.22 (m, 2 H). 23-(7 Synthesis of (±VN-((4aR*,7aS'|; -6-carbamimidoyl-7a-(2-fluoro-5-
(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2- vDbenzamide hydrochloride
Synthesized from (±)-N-((4aR*,7aS!i:)-7a-(2-fluoro-5- (isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide, 23-(6), (369 mg) by a procedure analagous to preparation example l-(6), affording 680 mg, approx. purity 64%).
LCMS (method A2 Short_20_95) RT 1.06min, m/z 470 [M+H]+.
- I l l - 23-(8) Synthesis of (± -N-((4aR*,7aS* -6-(5-fluoro-4-hvdroxy-6-methylpyrimidin-2- yl)-7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
Synthesized from (±)-N-((4aR*,7aS*)-6-carbamimidoyl-7a-(2-fluoro-5- (isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- yl)benzamide hydrochloride, 23-(7), (680 mg, approx. purity 64%), affording 141 mg. LCMS (method A2 Short_20_95) RT 1.35min, m/z 554 [M+H]+.
23 -(9) Synthesis of (± -N-((4aR*,7aS* -6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)benzamide
Synthesized from (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-hydroxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 23-(8), (141 mg) by a procedure analogous to preparation example l-(8), affording 62 mg.
LCMS (method A2 Short_20_95) RT 1.85min, m/z 568 [M+H]+.
23-(10) Synthesis of (±)-(4aR*,7aS*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-vn- 7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-amine
Synthesized from (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide, 23-(9), (62 mg) by a procedure analogous to preparation example l-(9), affording 46 mg.
1H NMR (400 MHz, CDC13) δ ppm 1.20 (d, J=6.1 Hz, 6 H), 2.31 (d, J=2.8 Hz, 3 H),
2.95 (dd, J=13.0, 5.1 Hz, 1 H), 3.05 (dd, J=13.0, 3.9 Hz, 1 H), 3.17 - 3.28 (m, 1 H), 3.66 (septet, 6.1 Hz, 1 H), 3.72 - 3.87 (m, 3 H), 3.96 (s, 3 H), 4.32 (d, J=11.2 Hz, 1 H), 4.42 - 4.50 (m, 2 H), 7.04 (dd, J=12.2, 8.4 Hz, 1 H), 7.23 - 7.34 (m, 2 H)
LCMS (method A2 Short_20_95) RT 1.09min, m/z 448 [M+H]+.
Example 24: f±)-f4aR*,7aS'|;)-6-f5-fluoro-4-methoxy-6-methylpyrimi(iin-2-yl)-7a- ( 2-fluoro-5-isobutoxyphenyl)-4,4a,5,6 Ja-hexahydropyrrolo [3,4-dl [ 1 ,31 thiazin-2- amine 24-(10)
Figure imgf000114_0001
24-(l) Synthesis of 2-bromo-l-fluoro-4-isobutoxybenzene
To a stirred solution of 3-bromo-4-fluorophenol (6.43 g) and cesium carbonate (15.00 g) in DMF (30 mL) was added l-bromo-2-methylpropane (5.54 g). The reaction mixture was heated to 65°C, then after 22 hrs, was cooled, diluted with EtOAc (200 mL), and extracted with brine (3 x 50 mL). The organic portion was dried over MgS04, evaporated, purified by flash column chromatography (silica gel, 0 to 2% EtOAc in hexanes) to afford 2-bromo-l-fluoro-4-isobutoxybenzene (6.17 g).
1H NMR (400 MHz, CDC13) δ ppm 1.03 (d, J=6.7 Hz, 6 H), 2.08 (nonet, J=6.7 Hz, 1 H), 3.68 (d, J=6.6 Hz, 2 H), 6.80 (ddd, J=3.1, 3.7, 9.0 Hz, 1 H), 7.03 (dd, J=9.0, 8.3 Hz, 1 H), 7.08 (dd, J=5.6, 3.1 Hz, 1 H). 24-(2) Synthesis of (±W3aR*.6aS* ert-butyl 6a-(2-fluoro-5- isobutoxyphenyl)tetrahvdro-lH-pyrrolor3,4-c1isoxazole-5(3H)-carboxylate
To a stirred solution of 2-bromo-l-fluoro-4-isobutoxybenzene 24-(l) (2.00 g) in THF (5 mL) and toluene (25 mL) at -78°C was added n-butyl lithium (5.0 mL, 1.6 N in hexanes) dropwise over 10 mins. After stirring for 20 mins at -78°C, boron trifluoride etherate (1.0 mL) was added dropwise over 2 mins, followed by tert-butyl 3a,4-dihydro- 3H-pyrrolo[3,4-c]isoxazole-5(6H)-carboxylate, i-(5), (1.08 g) as a solution in THF (5 mL) dropwise over 5 mins. After stirring for a further 90 mins at -78°C, the reaction mixture was quenched by the addition of NH4C1 (sat., aq., 10 mL) and allowed to warm to room temperature. Water (10 mL) was then added and the mixture extracted with EtOAc (3 x 30 mL). The combined organic portions were dried over MgS04, evaporated and purified by flash column chromatography (silica gel, 0 to 20% EtOAc in hexanes) to afford (±)-(3aR*,6aS*)-tert-butyl 6a-(2-fluoro-5- isobutoxyphenyl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate (1.10 g). 1H NMR (400 MHz, CDC13) δ ppm 1.02 (d, J=6.7 Hz, 6 H), 1.48 (s, 9 H), 2.00 - 2.15 (m, 1 H), 3.25 - 3.39 (m, 1 H), 3.53 - 3.82 (m, 7 H), 4.40 - 4.49 (m, 1 H), 5.13 (br. s., 1 H), 6.76 (dt, J=8.8, 3.6 Hz, 1 H), 6.89 - 7.04 (m, 1 H), 7.35 - 7.49 (m, 1 H).
24-(3) Synthesis of (±)-(3S*,4R*)-fert-butyl 3-amino-3-(2-fluoro-5-isobutoxyphenyl)-4- (hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a stirred solution of (±)-(3aR*,6aS*)-tert-butyl 6a-(2-fluoro-5- isobutoxyphenyl)tetrahydro-lH-pyrrolo[3,4-c]isoxazole-5(3H)-carboxylate, 24-(2), (1.10 g) in THF (10 mL) and acetic acid (1 mL) was added powdered zinc (1.0 g). After stirring at room temperature for 18 hrs the reaction mixture was filtered through celite®, washing with MeOH (100 mL) and evaporated. NaHC03 (sat., aq., 50 mL) was then added, and the mixture was extracted with EtOAc (3 x 75 mL). The combined organic portions were dried over MgS04 and evaporated to afford (±)-(3S*,4R*)-tert-butyl 3- amino-3 -(2-fluoro-5 -isobutoxyphenyl)-4-(hydroxymethyl)pyrrolidine- 1 -carboxylate (1.05 g).
1H NMR (400 MHz, CDC13) δ ppm 0.97 - 1.08 (m, 6 H), 1.49 (s, 9 H), 2.01 - 2.13 (m, 1
H), 2.75 - 2.87 (m, 1 H), 3.07 - 3.18 (m, 1 H), 3.46 - 4.04 (m, 7 H), 4.44 - 4.54 (m, 1 H), 6.75 - 6.81 (m, 1 H), 6.96 - 7.04 (m, 1 H), 7.1 1 - 7.26 (m, 1 H)
24-(4 Synthesis of (±W3S R* ert-butyl 3-(3-benzoylthioureidoV3-(2-fluoro-5- isobutoxyphenyl)-4-(hvdroxymethyl)pyrrolidine- 1 -carboxylate
To a stirred solution of (±)-(3S*,4R*)-tert-butyl 3-amino-3-(2-fluoro-5- isobutoxyphenyl)-4-(hydroxymethyl)pyrrolidine-l -carboxylate, 24-(3), (635 mg). in DCM (5 mL) was added benzoyl isothiocyanate (0.30 mL) dropwise. After stirring at room temperature for 1 hr, the reaction mixture was concentrated to ca. 1 mL and purified directly by flash column chromatography (silica gel, 0 to 50% EtOAc in hexanes) to afford (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(2-fluoro-5- isobutoxyphenyl)-4-(hydroxymethyl)pyrrolidine- 1 -carboxylate (540 mg).
1H NMR (400 MHz, CDC13) δ ppm 1.03 (d, J=6.6Hz, 6 H), 1.52 (s, 9 H), 1.96 - 2.14 (m, 1 H), 2.97 - 3.14 (m, 1 H), 3.33 - 3.61 (m, 2 H), 3.62 - 3.78 (m, 2 H), 3.82 - 3.96 (m, 1 H), 3.99 - 4.10 (m, 1 H), 4.10 - 4.18 (m, 1 H), 4.52 - 4.70 (m, 1 H), 6.79 (dt, J=8.8, 3.3 Hz, 1 H), 6.95 (dd, J=11.4, 9.0 Hz, 1 H), 7.02 - 7.08 (m, 1 H), 7.46 - 7.56 (m, 2 H), 7.57 - 7.66 (m, 1 H), 7.80 - 7.89 (m, 2 H), 8.88 (s, 1 H), 11.82 (br. s., 1 H).
24-(5 Synthesis of (±y(4aR*,7aS* -fert-butyl 2-benzamido-7a-(2-fluoro-5- isobutoxyphenyl)-4a,5,7,7a-tetrahvdropyrrolor3,4-diri,31thiazine-6(4H)-carboxylate
Synthesized from (±)-(3S*,4R*)-tert-butyl 3-(3-benzoylthioureido)-3-(2-fluoro- 5 -isobutoxyphenyl)-4-(hydroxymethyl)pyrrolidine-l -carboxylate 24-(4) (380 mg) by a procedure analagous to preparation example l-(4), affording 267 mg.
LCMS (method A2 Short_20_95) RT 1.91 min, m/z 528 [M+H]+.
24-(6) Synthesis of (± -N-((4aR*,7aS'|; -7a-(2-fluoro-5-isobutoxyDhenvn-4,4a,5,6JJa- hexahydropyrrolor3,4-diri,31thiazin-2-yl)benzamide
Prepared from (±)-(4aR*,7aS*)-tert-butyl 2-benzamido-7a-(2-fluoro-5- isobutoxyphenyl)-4a,5,7,7a-tetrahydropyrrolo[3,4-d][l,3]thiazine-6(4H)-carboxylate 24-(5) (267 mg) by a procedure analogous to preparation example l-(5), affording 245mg, approximate purity 88%.
1H NMR (400 MHz, CDC13) δ ppm 1.00 (d, J=6.7 Hz, 6 H), 1.97 - 2.13 (m, 1 H), 2.71 - 2.91 (m, 1 H), 3.06 - 3.16 (m, 1 H), 3.30 - 3.49 (m, 2 H), 3.54 - 3.71 (m, 4 H), 3.89 -
4.00 (m, 1 H), 6.81 (dd, J=6.3, 2.9 Hz, 2 H), 7.02 (t, J=10.6 Hz, 1 H), 7.33 - 7.48 (m, 2 H), 7.50 - 7.62 (m, 1 H), 8.01 (d, J=7.2 Hz, 2 H)
24-(7) Synthesis of (±yN-((4aR^7aS*V6-carbamimidoyl-7a-(2-fluoro-5- isobutoxyphenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-yl)benzamide hydrochloride
Synthesized from (±)-N-((4aR*,7aS*)-7a-(2-fluoro-5-isobutoxyphenyl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 24-(6) (245 mg, approx. purity 88%) by a procedure analagous to preparation example l-(6) affording 290mg, approx. purity 87%.
LCMS (method A2 Short_20_95) RT 1.20min, m/z 470 [M+H]+. 24-(8) Synthesis of (± -N-((4aR*,7aS* -6-(5-fluoro-4-hvdroxy-6-methylpyrimidin-2- yl)-7a-(2-fluoro-5-isobutoxyphenyl)-4,4a,5,6,7 ,7a-hexahydropyrrolor3,4-din,31thiazin- 2-yl)benzamide
Synthesized from (±)-N-((4aR*,7aS*)-6-carbamimidoyl-7a-(2-fluoro-5- isobutoxyphenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide hydrochloride 24-(7) (198 mg) by a procedure analogous to preparation example l-(7). LCMS (method A2 Short_20_95) RT 1.53min, m/z 554 [M+H]+.
24-(9) Synthesis of (± -N-((4aR*,7aS* -6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(2-fluoro-5-isobutoxyphenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin- 2-yl)benzamide
Synthesized from (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-hydroxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(isopropoxymethyl)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 24-(8) (198 mg) by a procedure analagous to preparation example l-(8) affording 55 mg.
LCMS (method A2 Short_20_95) RT 1.99min, m/z 568 [M+H]+.
24-(10) Synthesis of (±)-(4aR*,7aS*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-vn- 7a-(2-fluoro-5-isobutoxyphenyl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4-diri,31thiazin-2- amine
Synthesized from (±)-N-((4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-isobutoxyphenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)benzamide 24-(9) (55 mg) by a procedure analagous to preparation example l-(9) affording 31 mg.
1H NMR (400 MHz, CDC13) δ ppm 0.96 - 1.06 (m, 6 H), 1.99 - 2.12 (m, 1 H), 2.31 (d,
J=2.8 Hz, 3 H), 2.87 - 3.01 (m, 1 H), 3.01 - 3.11 (m, 1 H), 3.17 - 3.29 (m, 1 H), 3.65 (d, J=6.5 Hz, 2 H), 3.69 - 3.82 (m, 3 H), 3.96 (s, 3 H), 4.32 (d, J=11.2 Hz, 1 H), 4.45 (br. s., 2 H), 6.76 (dt, J=8.8, 3.4 Hz, 1 H), 6.90 (dd, J=6.7, 3.2 Hz, 1 H), 6.96 (dd, J=11.7, 8.9 Hz, 1 H).
LCMS (method A2 Short_20_95) RT 1.25 min, m/z 464 [M+H]+. Example 25: f±)-f4aR*,7aS*)-7a-f5-amino-2-fluorophenyl)-6-f5-fluoro-4-methoxy- 6-methylpyrimidin-2-yl)-4,4a,5,6 ,7a-hexahydropyrr()l() [3,4-dl [ 1 ,31 thiazin-2- amine 25-(3)
Figure imgf000118_0001
25-(l) Synthesis of (±)- (4aR* aS*)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 7a-(2-fluoro-5-nitrophenyl)-4,4a,5,6 ,7,7a-hexahydropyrrolo[3,4-dl[l 3]thiazin-2-amme
To a stirred solution of (±)-(4aR*,7aS!i:)-6-(5-fiuoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-amine l-(9) (314 mg) in TFA (2mL) at 0°C was added sulfuric acid (0.2mL) dropwise, then fuming nitric acid (0.034 mL) dropwise. After stirring at 0°C for a further 3 h, the reaction mixture was poured onto lOOg ice, which after melting was basified with NaOH (2N aq.) to pH 12 and extracted with EtOAc (3 x 100 mL). The combined organic portions were dried over MgS04 and evaporated to afford 25-(l) (365 mg, approx. purity 85%).
LCMS (method A2 Short_20_95) RT 1.00 min, m/z 437 [M+H]+.
25 -(2) Synthesis of (± ert-butyl ((4aR*,7aS'|; -7a-(5-amino-2-fluorophenvn-6-(5- fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7 a iexahydropyrrolo [3,4- dl [ 1 ,31thiazin-2-yl)carbamate
To a solution of (±)-(4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-7a-(2-fluoro-5-nitrophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2- amine 25-(l) (365 mg, approx. purity 85%) in DCM (2mL) was added N,N- diisopropylethylamine (0.372 mL) followed by di-tert-butyl dicarbonate (230 mg). After stirring for 3 days, NaHC03 (sat., aq., 25 mL) was added and the mixture was extracted with EtOAc (3 x 30 mL). The combined organic portions were dried over MgS04, evaporated, and purified by silica gel chromatography (0 to 35% EtOAc in hexanes) to afford 25 -(2) (274 mg).
LCMS (method A2 Short_20_95) RT 1.60min, m/z 537 [M+H]+.
25-(3) Synthesis of (± -(4aR*,7aS'|; -7a-(5-amino-2-fluorophenvn-6-(5-fiuoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-di ri,31thiazin-2- amine
To a solution of (±)-tert-butyl ((4aR*,7aS!i:)-7a-(5-amino-2-fiuorophenyl)-6-(5- fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)carbamate 25-(2) (14 mg) in DCM (1 mL) was added trifluoracetic acid (0.5ml). After stirring for 2 h, the reaction mixture was evaporated and NaHC03 (sat., aq., 5 mL) was added. The mixture was extracted with EtOAc (2 x lOmL) and the combined organic portions were dried over MgS04 and evaporated to afford 25-(3) (10 mg).
1H NMR (400 MHz, CDC13) δ ppm 2.30 (d, J=2.8 Hz, 3 H), 2.98 (dd, J=13.3, 4.3 Hz, 1 H), 3.15 (dd, J=13.3, 3.7 Hz, 1 H), 3.39 - 3.51 (m, 1 H), 3.60 - 3.71 (m, 1 H), 3.76 (t, J=10.1 Hz, 1 H), 3.88 (dd, J=10.8, 8.4 Hz, 1 H), 3.95 (s, 3 H), 4.01 - 4.12 (m, 1 H), 4.22 (d, J=11.7 Hz, 1 H), 6.51 - 6.69 (m, 2 H), 6.87 (dd, J=12.1, 8.6 Hz, 1 H).
LCMS (method A2 Short_20_95) RT 1.60min, m/z 537 [M+H]+. Example 26: (±)-(4aR'|;JaS'|;)-7a-(5-(dimethylamino)-2-fluorophenyl)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4- di n,31thiazin-2-amine 26-(2)
Figure imgf000119_0001
25-(2) 26-(1 ) 26-(2) 26-d Synthesis of (± ert-butyl ((4aR*,7aS'|; -7a-(5-(dimethylamino -2-fluorophenvn-
6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolor3,4- dl Γ 1 ,31thiazin-2-yl)carbamate
To a solution of (±)-tert-butyl ((4aR*,7aS!i:)-7a-(5-amino-2-fiuorophenyl)-6-(5- fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)carbamate 25-(2) (35 mg) in methanol was added acetic acid
(0.2mL), formaldehyde (6.20 μί, 37% aq. solution) and sodium cyanoborohydride (10 mg). After stirring for 1 h, the reaction mixture was poured onto NaHC03 (sat., aq., 20 mL). The mixture was extracted with EtOAc (2 x 25 mL) and the combined organic portions were dried over MgS04, evaporated and purified by silica gel chromatography (0 to 50% EtOAc in hexanes) to afford 26-(l) (9 mg)
LCMS (method A2 Short_20_95) RT 1.53min, m/z 535 [M+H]+.
26-(2) Synthesis of (±V (4aR* JaS * 7a-(5 -( dimethylaminoV 2-fluorophenyiy 6-( 5 - fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4- dl Γ 1 ,31thiazin-2-amine
Synthesized from (±)-tert-butyl ((4aR*,7aS*)-7a-(5-(dimethylamino)-2- fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)carbamate 26-(l) (11 mg) by a procedure analogous to preparation example 25-(3), affording 9 mg.
1H NMR (400 MHz, CDC13) δ ppm 2.30 (d, J=2.8 Hz, 3 H), 2.87 (s, 6 H), 2.96 (dd, J=13.0, 4.5 Hz, 1 H), 3.05 - 3.15 (m, 1 H), 3.20 - 3.39 (m, 1 H), 3.66 - 3.86 (m, 3 H), 3.94 (s, 3 H), 4.32 (d, J=l l .l Hz, 1 H), 6.59 (dt, J=8.9, 3.4 Hz, 1 H), 6.70 (dd, J=6.8, 3.1 Hz, 1 H), 6.93 (dd, J=11.9, 8.9 Hz, 1 H)
Example 27: ^-HaR^JaS^ Ta-fS-qi^-difluoropropan-l-vDamino)-!- fluorophenyl)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a- hexahvdropyrrolor3,4-dl [l,31thiazin-2-amine 27-(2)
Figure imgf000120_0001
25-(2) 27-(1 ) 27-(2)
27-(l) Synthesis of (± ert-butyl ((4aR*,7aS'|; -7a-(5-((L3-difluoropropan-2-vnamino - 2-fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-di r i,31thiazin-2-yl)carbamate
l,3-Difluoropropan-2-one (7 mg) was added to (±)-tert-butyl ((4aR*,7aS*)-7a- (5-amino-2-fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)carbamate 25 -(2) (25 mg), and after 5 mins, methanol (1 ml) and acetic acid (0.2 ml) were added, followed by 2- Pico line borane complex (10 mg). After stirring for 2 h, the reaction mixture was poured onto NaHC03 (sat., aq., 10 mL). The mixture was extracted with EtOAc (2 x 20 niL) and the combined organic portions were dried over MgS04, evaporated and purified by silica gel chromatography (0 to 30% EtOAc in hexanes) to afford 27-(l) (17 mg).
LCMS (method A2 Short_20_95) RT 1.61min, m/z 585 [M+H]+.
27-(2) Synthesis of (±V(4aR*.7aS*V7a-(5-( 1 ,3-difluoropropan-2-vnamino -2- fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-amine
Prepared from (±)-tert-butyl ((4aR*,7aS*)-7a-(5-((l,3-difluoropropan-2- yl)amino)-2-fluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)- 4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)carbamate
by a procedure analogous to preparation example 25-(3) affording 12 mg.
1H NMR (400 MHz, CDC13) δ ppm 2.30 (d, J=2.8 Hz, 3 H), 2.98 (dd, J=13.2, 4.4 Hz, 1 H), 3.13 (dd, J=13.1, 3.7 Hz, 1 H), 3.36 - 3.48 (m, 1 H), 3.68 - 4.02 (m, 7 H), 4.23 (d, J=l 1.6 Hz, 1 H), 4.41 - 4.70 (m, 4 H), 6.56 (dt, J=8.7, 3.3 Hz, 1 H), 6.63 (dd, J=6.7, 3.0 Hz, 1 H), 6.93 (dd, J=11.9, 8.7 Hz, 1 H).
Example 28: f±)-f4aR*,7aS'|;)-6-f5-fluoro-4-methoxy-6-methylpyrimi(iin-2-yl)-7a- f2-fluoro-5-fmethylamino)phenyl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4- di n,31thiazin-2-amine 28-(2)
Figure imgf000121_0001
25-(2) 28-(1 ) 28-(2)
28-(l) Synthesis of (± ert-butyl ((4aR*,7aS'|; -6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(methylamino)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-yl)carbamate
Prepared from (±)-tert-butyl ((4aR*,7aS!i:)-7a-(5-amino-2-fluorophenyl)-6-(5- fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)carbamate 25-(2) (25 mg) and 37% aq. Formaldehyde by a procedure analogous to preparation example 27-(l) affording 6 mg.
LCMS (method A2 Short_20_95) RT 1.40min, m/z 520 [M+H]+. 28 -(2) Synthesis of (±)- (4aR* ,7aS *)-6-(5 -fluoro-4-methoxy-6-methyl yrimidin-2-yl)-
7a-(2-fluoro-5-(methylamino)phenyl)-4,4a,5,6,7,7a-hexahydropytTolor3,4- dl Γ 1 ,31thiazin-2-amine
Prepared from (±)-tert-butyl ((4aR*,7aS*)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(methylamino)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)carbamate by a procedure analogous to preparation example 25-(3) affording 2 mg.
1H NMR (400 MHz, CDC13) δ ppm 2.33 (d, J=2.4 Hz, 3 H), 2.80 (s, 3 H), 3.06 (dd, J=13.6, 4.1 Hz, 1 H), 3.27 (dd, J=13.2, 4.0 Hz, 1 H), 3.64 - 3.74 (m, 1 H), 3.80 (t, J=10.1 Hz, 1 H), 3.93 - 4.04 (m, 4 H), 4.16 - 4.23 (m, 1 H), 4.27 - 4.43 (m, 1 H), 6.46 - 6.60 (m, 2 H), 6.88 - 7.01 (m, 1 H).
Example 29: f±)-f4aR*,7aS'|;)-6-f5-fluoro-4-methoxy-6-methylpyrimi(iin-2-yl)-7a- f2-fluoro-5-fisopropylamino)phenyl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4- thiazin-2-amine 29-(2)
Figure imgf000122_0001
25-(2) 29-(1 ) 29-(2)
29-(l) Synthesis of (± ert-butyl ((4aR*,7aS'|; -6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(isopropylamino)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-dl[l,31thiazin-2-yl)carbamate
Synthesized from (±)-tert-butyl ((4aR*,7aS!i:)-7a-(5-amino-2-fiuorophenyl)-6-(5- fluoro-4-methoxy-6-methylpyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-yl)carbamate 25-(2) (37 mg) by a procedure analogous to preparation example 27-(l) affording 21mg.
LCMS (method A2 Short_20_95) RT 1.47min, m/z 549 [M+H]+.
29-(2) Synthesis of (±)- (4aR* ,7aS *)-6-(5 -fluoro-4-methoxy-6-methylpyrimidin-2-yl)-
7a-(2-fluoro-5-(isopropylamino)phenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d] [ 1 ,31thiazin-2-amine
Prepared from (±)-tert-butyl ((4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluoro-5-(isopropylamino)phenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-yl)carbamate by a procedure analogous to preparation example 25-(3) affording 19 mg. 1H NMR (400 MHz, CDC13) δ ppm 1.18 (d, J=6.1 Hz, 6 H), 2.30 (d, J=2.8 Hz, 3 H), 2.98 (dd, J=13.2, 4.3 Hz, 1 H), 3.17 (dd, J=13.3, 3.6 Hz, 1 H), 3.42 - 3.59 (m, 2 H), 3.75 (t, J=10.0 Hz, 1 H), 3.81 - 3.91 (m, 1 H), 3.95 (s, 3 H), 4.01 - 4.13 (m, 2 H), 4.23 (d, J=11.7 Hz, 1 H), 6.40 - 6.54 (m, 2 H), 6.89 (dd, J=12.0, 8.6 Hz, 1 H).
Example 30: f4aR,7aS)-6-f5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-f2- fluorophenyl)-4,4a,5.l6.l7.l7a-hexahvdropyrrolo[3.l4-dl [l.l31thiazin-2-amine
Figure imgf000123_0001
Figure imgf000123_0002
30-d Synthesis of (± -N.N-di-tert-butyloxycarbonyl-(4aR'|;JaS'|; -6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolor3,4-diri,31thiazin-2-amine
To a stirred solution of (4aR*,7aS!i:)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-
2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine (58 mg) and N,N-diisopropylethylamine (40 mg) in DCM (2 mL) was added di-tert- butyl dicarbonate (50 mg), followed by 4-(dimethylamino)pyridine (0.2 mg). After stirring at room temperature for 16 h, a further portion of di-fert-butyl dicarbonate (50 mg) was added. After stirring for a further hour, the reaction mixture was concentrated and purified by silica gel column chromatography (gradient from 0% to 20% EtOAc in hexanes) to obtain the title compound (62 mg).
1H-NMR (400 MHz, CDC13) δ ppm 1.45 (s, 18 H), 2.29 (d, J= 1.8 Hz, 3 H), 2.93 (dd, J=13.4, 3.6 Hz, 1 H), 3.13 (dd, J=13.3, 3.1 Hz, 1 H), 3.33 - 3.42 (m, 1 H), 3.84 (t, J=10.4 Hz, 1 H), 3.88 - 4.09 (m, 5 H), 4.40 (d, J=11.6 Hz, 1 H), 7.03 - 7.20 (m, 2 H), 7.28 - 7.37 (m, 1 H), 7.53 (t, J=7.7 Hz, 1 H) 30-(2) Separation of N,N-di-tert-butyloxycarbonyl-(4aR,7aS)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6 ,7,7a-hexahydropyrrolor3,4- din,31thiazin-2-amine and N,N-di-tert-butyloxycarbonyl-(4aS,7aR)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahvdropyrrolor3,4-din,31thiazin-2-amine
The isomers of (±)-N,N-di-tert-butyloxycarbonyl-(4aR*,7aS!i:)-6-(5-fiuoro-4- methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine (62 mg) were separated by preparative chiral HPLC, Method H2, (IC column (#5), eluent (10% dichloromethane / hexane):EtOH 95:5 (v/v)) to afford the faster running enantiomer, N,N-di-tert- butyloxycarbonyl-(4aS,7aR)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine (29 mg) as a white solid, NMR data as for racemic mixture 30-(l). This was followed by the slower running enantiomer, N,N-di-tert-butyloxycarbonyl-(4aR,7aS)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-amine 1-(14) (30 mg) as a white solid, NMR data as for racemic mixture 30-(l).
30-(3) Synthesis of (4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2- fluorophenyl)-4,4a,5,6,7,7a-hexahvdropyrrolor3,4-diri,31thiazin-2-amine
To a solution of N,N-di-tert-butyloxycarbonyl-(4aR,7aS)-6-(5-fluoro-4- methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a- hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine 30-(2) (30 mg) in DCM (2 mL) was added trifluoroacetic acid (1 mL) and the reaction mixture was stirred at RT for 2 hrs. The mixture was then concentrated and NaHC03 (sat. aq., 10 mL) was added. The mixture was then extracted with EtOAc (2 x 20 mL), and the combined organic extracts were dried over MgS04 and evaporated to afford (4aR,7aS)-6-(5-fluoro-4-methoxy-6- methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4- d][l,3]thiazin-2-amine (22 mg) as a white powder.
1H NMR (400 MHz, CDC13) δ ppm 2.31 (d, J=2.3 Hz, 3 H), 2.97 (dd, J=l 3.1, 5.1 Hz, 1
H), 3.05 (dd, J=13.1, 3.8 Hz, 1 H), 3.20 - 3.30 (m, 1 H), 3.70 - 3.85 (m, 2 H), 3.85 - 3.92 (m, 1 H), 3.96 (s, 3 H), 4.34 (d, J=11.4 Hz, 1 H), 7.07 (dd, J=12.5, 8.2 Hz, 1 H), 7.12 - 7.21 (m, 1 H), 7.23 - 7.33 (m, 1 H), 7.37 (t, J=8.0 Hz, 1 H). Biological Data - in vitro analysis In vitro cellular assay:
Quantification of Αβ peptide in culture of neurons from rat fetus brain
(1) Rat primary neuronal culture
Primary neuronal cultures were prepared from the cerebral cortex of embryonic day 18 Wistar rats (Charles River, UK). Specifically, the embryos were aseptically removed from pregnant rats following C02 overdose. The brain was isolated from the embryo and immersed in HBSS (Sigma Aldrich #H9269) containing lOmM HEPES (Gibco #15630-056). The cerebral cortex was collected from the isolated brain under a stereoscopic microscope. The cerebral cortex fragments collected were
enzymatically treated in an enzyme solution containing 0.05% trypsin-EDTA solution (GIBCO, #25300) at 37°C for 20 minutes to disperse the cells. The cells were then washed twice and then gently resuspended in Neurobasal medium (Gibco #21103) supplemented with lx B27 supplement (GIBCO #17504-044), 2 mM L-glutamine (GIBCO #25030), lx N2 (GIBCO #17502-048), lOOU/ml Pen/Strep (GIBCO 15140- 122) and 5% heat inactivated FCS (PAA #A15-551). The cell dispersion was filtered through a 40-μιη nylon mesh (BD Falcon #352340) to remove the remaining cell mass, and thus a neuronal cell suspension was obtained. The neuronal cell suspension was diluted with the medium above and then plated in a volume of 100 /well at an initial cell density of 3.25 x 105 cells/ml in poly- D-lysine coated 96-well culture plate (Greiner #655940). The plated cells were cultured in the culture plate at 37°C in 5% C02-95% air for 24hrs. The total amount of the medium was replaced with 'assay
Neurobasal medium' (as above excluding heat inactivated FCS), and then the cells were cultured for a further five days.
(2) Addition of compound
The drug was added to the culture plate on Day 6 of culture as follows. 8 point compound serial dilutions were generated in DMSO at a concentration of xlOOO that of the final assay concentration (FAC). Compound solutions were then prepared by adding 300μ1 of 'Assay Neurobasal media' (as described in above section) to Ιμΐ of DMSO compound stock. The total amount of the medium was removed from each of the cell plate wells, and 140μΕΛνε11 of fresh culture medium was added to cells, and subsequently a further 60 μΐ of compound solution was then added to the cells. The final DMSO concentration was 0.1%.
(3) Sampling The cells were cultured for either 1 day after addition of the compound for ABx- 40. 150μ1 of sample medium was collected and used as the ELISA sample.
(4) Evaluation of cell survival
Cell survival was evaluated using an Alamar assay according to the following procedure. After collecting the sample to be used in the ELISA assay, 50μ1 of 20% Alamar blue solution (Invitrogen #DAL1100) in assay Neurobasal media, was added to 50μ1 of remaining sample within each well. Cells were then incubated at 37°C in 5% C02-95% air for 45 minutes.
Measurement of fluorescence intensity for each well was carried out at
540/590nm using a Pherastar plus plate reader (BMG labtech). Upon measurement, wells having no cells plated and containing only the medium and Alamar solution were set as background (bkg).
(5) Αβ ELISA
Human/Rat β Amyloid (42) ELISA Kit Wako (#290-62601) and Human/Rat β Amyloid (40) ELISA Kit Wako (#294-62501) from Wako Pure Chemical Industries, Ltd. were used for Αβ ELISA. Αβ ELISA was carried out according to the protocols recommended by the manufacturers, described in the documents accompanying the kits. The results were shown as percentage of the control groups and IC50 values for each compound were determined using four parameter logistic fit model using the XLFIT5 software package (IDBS).
As measured by the above in vitro assay, compound Examples gave the IC5o values (Αβ40) recorded in Table 1.
Table 1
Figure imgf000126_0001
n = 1 [except Ex. 1 (n = 3) and Ex. 26, 27, 29 (n = 2)]. MDRl-MDCK Permeability Assay (Bi-directional; pH 7.4/pH 7.4)
A compounds potential for CNS penetration may be assessed in vitro by determining whether a compound can be subjected to Pgp efflux, i.e. by conducting an in vitro Pgp assay.
Protocol Summary
MDCK cells are an epithelial cell line of canine kidney origin. These cells can be transfected to stably express active P-glycoprotein (MDRl-MDCK) and are ideal for studying drug efflux. Test compound was added to either the apical or basolateral side of a confiuent monolayer of MDRl-MDCK cells and permeability was measured by monitoring the appearance of the test compound on the opposite side of the membrane using LC-MS/MS. From this an apparent permeability (Papp) coefficient and efflux ratio was measured/calculated.
Objective
To measure the permeability of test compound in the apical to basolateral (A-B) and basolateral to apical (B-A) direction across MDRl-MDCK cells. A ratio of B-A and A-B permeabilities was calculated (efflux ratio) to show whether the compound undergoes P-glycoprotein efflux.
Compounds were provided as a 200 μΙ_, solution of 10 mM test compound in
DMSO.
Experimental Procedure
MDRl-MDCK cells obtained from the NIH (Rockville, MD, USA) were used. Following culture to confluency, the monolayers were prepared by rinsing both basolateral and apical surfaces twice with pH 7.4 buffer at 37°C. Cells were then incubated with pH 7.4 buffer in both apical and basolateral compartments for 40 min to stabilise physiological parameters.
Buffer at pH 7.4 was then removed from the apical compartment and replaced with test compound dosing solutions. The solutions were prepared by diluting 10 mM test compound in DMSO with buffer to give a final test compound concentration of 10 μΜ (final DMSO concentration adjusted to 1%). The fluorescent integrity marker Lucifer yellow was also included in the dosing solution. The apical compartment inserts were then placed into 'companion' plates containing fresh buffer at pH 7.4. Analytical standards were made from dosing solutions.
For basolateral to apical (B-A) experiments the experiment was initiated by replacing buffer in the inserts then placing them in companion plates containing dosing solutions. Incubations were carried out in an atmosphere of 5% C02 with a relative humidity of 95% at 37°C for 60 minutes. After the incubation period, the companion plate was removed and apical and basolateral samples diluted for analysis by LC-MS/MS. Test compound permeability was assessed in duplicate. On each plate compounds of known permeability characteristics were run as controls.
Test and control compounds were quantified by LC-MS/MS cassette analysis using a 5-point calibration with appropriate dilution of the samples. General analytical conditions were used. The starting concentration (Co) was determined from the dosing solution and the experimental recovery calculated from Co and both apical and basolateral compartment concentrations.
The integrity of the monolayers throughout the experiment was checked by monitoring Lucifer yellow permeation using fluorimetric analysis. Lucifer yellow permeation is low if monolayers have not been damaged. If a Lucifer yellow Papp value was above QC limits in one individual test compound well, then an n=l result was reported. If Lucifer yellow Papp values were above QC limits in both replicate wells for a test compound, the compound was re -tested. If on repeat, high Lucifer yellow permeation was observed in both wells then toxicity or inherent fluorescence of the test compound was assumed. No further experiments were performed in this instance. Data Analysis
The permeability coefficient for each compound (Papp) was calculated from the following equation:
Papp = (dQ ÷ dt) ÷ (Co x A)
Where dQ/dt is the rate of permeation of the drug across the cells, Co is the donor compartment concentration at time zero and A is the area of the cell monolayer. Co was obtained from analysis of the dosing solution at the start of the experiment.
In addition, an efflux ratio (ER) was calculated from mean A-B and B-A data.
This is derived from:
ER = ((Papp (B - A)) ÷ ((Papp (A - B))
Two control compounds were screened alongside the test compounds, propranolol (highly permeable) and prazosin (a substrate for P-glycoprotein).
Data are shown in Table 2:
Table 2:
Figure imgf000128_0001
The data in Table 2 demonstrate that the example compounds tested have low Pgp efflux.
Biological Data - in vivo analysis
The in vitro data presented above demonstrate that compounds according to the present invention lower Αβ production in a cellular assay and display low Pgp efflux. The following in vivo assays and results demonstrate that they reduce Αβ40 in animal models and have desirable brain:blood (Br:Bl) and brain:plasma (Br:Pl) ratios.
Measurement of Compound Concentrations in Blood and Plasma
Compound concentrations in blood or plasma and brain may be measured to calculate a brain:blood (Br:Bl) or brain:plasma (Br:Pl) ratio. This method has been used historically and has been widely accepted as a method of determining CNS penetration (Summerfield et al., J Pharmacol. Expt. Ther. 2007, 322, 205). Literature has been published to suggest that it is important to consider the free concentrations in vivo and that when no efflux occurs from the brain the free plasma concentration should be the same or equivalent to the free brain concentration (Kalvass and Maurer,
Biopharmaceutics & Drug Disposition 2002, 23, 327; Mauer et al, Drug Metab.
Disposition 2005, 33, 175; Trainor Expert Opin. Drug Discov. 2007, 2, 51). Thus, a compound that can freely penetrate the CNS and is not subjected to active efflux, for example by Pgp or another transporter, should demonstrate a free brain:free plasma
(B¾ : Plfr) or an unbound brain:unbound plasma (Bru : Plu) of approximately 1 : 1. Free or unbound concentrations can be calculated by multiplying the total brain or total plasma concentration by the fraction unbound in brain tissue or plasma, which can be measured by the assay described herein below. It has also been proposed that drug concentrations in cerebrospinal fluid (CSF) are equivalent to free brain concentrations for compounds which are not actively effluxed from the brain (He et al., Xenobiotica 2009, 39, 687). Thus another method of determining CNS penetration would be to assess the CSF:free plasma (CSF : Plfr) or CSF :unbound plasma (CSF : Plu). If the free drug in plasma is able to permeate into the CNS and is not actively influxed or effluxed then the CSF:Plfr or CSF:P1U should be approximately 1 : 1.
Rat in vivo CNS penetration
Male Sprague Dawley rats were acquired from Charles River UK Ltd. (Margate, UK) and housed according to UK Home Office guidelines. Drugs were made up to the appropriate concentrations in 0.5% methyl cellulose. Animals were dosed orally (2mL/kg) by gavage at the doses outlined below.
At the specified time point post-dosing, the animals were administered an i.p. injection of sodium pentobarbitone (approximately 330mg/kg for terminal anaesthesia). Using a guillotine, the animals were decapitated and trunk blood collected into 15ml Falcon tubes containing 100 IU heparin. Blood was vortexed followed by centrifugation at 6000rpm, 4°C for 5 minutes. Plasma was collected for DMPK and ELISA assays and stored at -80°C until use. Brains were dissected out and divided along the midline, weighed and stored at -80°C until further use.
Method for Analysis of Plasma, Brain and CSF Samples
Preparation of Acetonitrile Working Solutions
Test compound was prepared as a 1 mg free base/mL solution in DMSO, vortexed and sonicated for 5 min. The 1 mg/mL DMSO solution was diluted to 30 and 100 μg/mL acetonitrile stocks, by adding 30 μΐ, to 970 μΐ, acetonitrile and 100 μΐ, to
900 μΐ^ acetonitrile, respectively. The 30 and 100 μg/mL acetonitrile stocks were then serially diluted 1 :9 (v/v) (100 μΐ, stock into 900 μΐ, acetonitrile) to give the following solutions: 0.003, 0.01, 0.03, 0.1, 0.3, 1, 3, 10, 30 and 100 μg/mL acetonitrile.
Preparation of Plasma Standards, Blanks and Samples
Control male Sprague Dawley rat plasma and the study plasma samples were stored at -80°C until the day of analysis when they were thawed at room temperature. Control plasma and study samples were centrifuged (2,000 x g, 10 min, 4°C) and the control plasma aliquoted (90 μί) into Micronics tubes for preparation of standards and blank samples. Study samples were aliquoted (100 μί) into Micronics tubes.
An aliquot (10 μί) of the appropriate acetonitrile stock was added to the control plasma (to give a final volume of 100 μί) to give the required calibration standards covering the range 1 - 10,000 ng/mL. Double blank and blank samples were prepared by adding 10 μΐ^ of acetonitrile to 90 μΐ^ of blank plasma.
Preparation of Brain Standards, Blanks and Samples
Control male Sprague Dawley rat brain and the study brain samples were weighed after collection and stored at -80 °C until the day of analysis when they were thawed at room temperature. Once thawed brains were diluted with water (4 mL per gram of tissue) and homogenised using a mechanical homogeniser. An aliquot (100 μ ) of each study sample was taken into Micronics tubes ready for analysis and sufficient aliquots (90 μί) of control brain homogenate prepared for preparation of standards and blanks.
An aliquot (10 μί) of the appropriate acetonitrile stocks was added to the control brain homogenate (to give a final volume of 100 μί) to give the required calibration standards covering the range 1.5 - 15,000 ng/g. Double blank and blank samples were prepared by adding 10 μΐ^ of acetonitrile to 90 μΐ^ of blank brain homogenate.
Extraction of Plasma and Brain Samples, Standards and Blanks
Each plasma and brain homogenate sample, standard and blank (100 μί) was extracted with an aliquot (300 μί) of acetonitrile (containing 0.1% formic acid and internal standard). Double blanks were extracted with an aliquot (300 μί) of acetonitrile containing 0.1% formic acid). All samples, standards and blanks were then vortex mixed and centrifuged (2000 x g, 15 min, 4°C). An aliquot (50 μί) of the resulting supernatant was then taken into a 2 mL 96-deep well plate and diluted with acetonitrile: water (50:50 v/v) (150 μί) ready for analysis by a specific LC/MS/MS method.
Preparation of CSF Samples, Standards and Blanks
Control male Sprague Dawley rat CSF and the study CSF samples were stored at -80°C until the day of analysis when they were thawed at room temperature. An aliquot (50 μί) of each study sample was taken into Micronics tubes ready for analysis and sufficient aliquots (45 μί) of control CSF prepared for preparation of standards and blanks.
An aliquot (5 μί) of the appropriate acetonitrile stocks was added to the control CSF (to give a final volume of 50 μί) to give the required calibration standards covering the range 1 - 3,000 ng/mL. Double blank and blank samples were prepared by adding 5 μί of acetonitrile to 45 μί of blank CSF.
Extraction of CSF Samples, Standards and Blanks
Each CSF sample, standard and blank (50 μί) was extracted with an aliquot (150 μΕ) of acetonitrile (containing 0.1% formic acid and internal standard). Double blanks were extracted with an aliquot (150 μί) of acetonitrile containing 0.1% formic acid. All samples were then vortex mixed and an aliquot (50 μί) of each was then further diluted in 150 μΐ^ of acetonitrile: water (50/50 v/v) in a 2 mL 96-deep well block ready for LC-MS/MS analysis.
All samples were then analysed using a Waters Acquity UPLC coupled to a Waters Xevo TQ mass spectrometer.
LC Conditions:
Column: Acquity UPLC BEH C 18, 1.7 urn, 2.1 x 50 mm, maintained at 40°C Mobile Phase: A = Water containing 0.1% formic acid
B = Acetonitrile containing 0.1% formic acid
Gradient:
Figure imgf000131_0001
Flow rate: 0.6 mL/min; injection volume 5 μί; autosampler temperature 6°C
LC flow was diverted to waste for the first 0.3 min of each injection
MS/MS transitions were optimised automatically by Waters QuanOptimise software.
Data Analysis
Compound to internal standard peak area ratios were calculated by TargetLynx v4.1 software and the data for calibration curves fitted appropriately. Concentrations of test compound were then quantified automatically in TargetLynx v4.1 and exported to Microsoft Excel 2003.
Amyloid detection
PEA/ NaCl Extraction of Αβ peptides from rat brain:
100ml of chilled 0.2% diethyl amine (DEA) in 50 mM NaCl (pH 10) was freshly prepared and lml/25mg brain tissue was added to each hemisphere (i.e. 40x brain volume). The brains were immediately homogenized using a Polytron PT 1200 for 1.5 minutes and samples left to incubate on ice for one hour after homogenisation. 3ml of the homogenate was transferred to a polyallomer tube (Beckman #362333) and spun at 133000 x g (55,000rpm) for 45 min at 4° C. The supernatant was then neutralised to pH 8-8.3 by adding 1/10 volume 0.5M Tris/HCl, pH 6.8. The samples can be used fresh or snap frozen on dry-ice and stored at -80°C until required for analysis.
Human/ Rat BAmyloid (40) ELISA (Wako Kit)
The Wako Αβ40 ELISA kit (Code No. 294-62501) uses the monoclonal antibody BNT77, raised against epitope Αβ(11-28) and the monoclonal antibody BA27, which specifically detects the C-terminal portion of Αβ40. This kit is used for the quantitative determination of human or rat Αβ(1-40) and also N-terminally truncated
Αβ40 species (Αβ(χ-40)) in biological matrices such as tissue culture medium, tissue homogenate, CSF and plasma.
For analysis, plasma and brain samples are diluted 1 : 1 with the standard diluent contained in the kit and CSF samples are diluted 1 :8 with the standard diluent contained in the kit. The assay is carried out according to the manufacturers instructions and samples are analysed in duplicate. Data is analysed using Microsoft Excel 2003 and statistical analysis is carried out using Genstat 9th Edition.
Results
Compounds were administered at a dose of 60mg/kg p.o. and plasma and brain samples were collected at 3 hours post-dose and the concentrations were measured. The results, including percentage Αβ40 reductions (%J,) as measured in Plasma (%J, PI), Brain (%J, Br) and CSF (%J, CSF) are shown in Table 3.
Table 3:
Figure imgf000133_0001
1. Calculated by multiplying the [PI] by PI Fu value recorded in Table 4.
2. Calculated by multiplying the [Br] by Br Fu value recorded in Table 4 below.
Recorded value greater than vehicle therefore no reduction reported.
The results of this assay demonstrate that compound examples 1 and 14 can reduce CSF Αβ after oral administration. The efficacy is achieved with low circulating plasma (total and free) concentrations. This is advantageous and indicates that the compound examples would be efficacious at low concentrations and thus less likely to cause unwanted peripherally mediated side effects than compounds requiring higher plasma concentrations to achieve comparable efficacy.
Whilst the compound examples displayed no statistically significant Αβ reduction in rat brain it is known in the art that a lack of Αβ reduction in rat brain may be attributable to a compound having low metabolic stability in rat, to a different rate of amyloid turnover in rat compared to higher species, or to a combination of both. Data presented below demonstrate that compound example 1 of the present invention has a lower metabolic stability in rat microsomes than human microsomes (Table 5) and a moderate-high clearance in vivo in rat (Table 6). Therefore, it is predicted that in a different species, for example human or monkey, the compound examples would reduce Αβ in the brain. Method For Determination of Plasma Protein Binding (PPB) and Brain Tissue
Binding (BTB)
Compounds were grouped into cassettes of up to n=4 compounds based on molecular weights differing by a minimum of 5 -Da for the purpose of cassetting compounds for incubation. Compounds were dissolved singly in DMSO to give 10 mM stock solutions before further dilution 100-fold in acetonitrile to give combined solutions containing 100 μΜ of each compound.
Naive male Sprague Dawley rat plasma and brains stored at -80 °C were thawed at room temperature. Plasma was centrifuged (2000 x g, 10 minutes, 4 °C) to remove any precipitate. Brains were weighed and diluted with 2 mL of Phosphate Buffered Saline (PBS) (pH 7.4) per gram of tissue and homogenised using a Polytron
homogeniser. An aliquot of each 100 μΜ combined compound solution was then added to plasma and brain homogenate and vortex mixed to give a final compound
concentration of 1 μΜ per compound in matrix.
A Rapid Equilibrium Dialysis (RED) base plate was filled with the appropriate number of 8-kDa molecular weight cut-off disposable inserts (n=3 per cassette)
(Thermo Scientific). Matrix containing compounds was then added into the matrix chamber of the inserts (200 μί) and an aliquot (350 μί) of PBS added to the buffer chambers. The plate was covered with a gas permeable seal (Thermo Scientific) and incubated at 37 °C (with 5% C02 and 95% humidity) for 6 hours with 200 rpm agitation. At the end of the incubation, the seal was removed and an equal aliquot taken from the matrix and PBS chambers and dispensed into Micronics tubes. Plasma and brain was then matrix matched with an equal volume of drug-free PBS and the PBS samples with an equal volume of the corresponding drug-free matrix, to give equal final compositions and volumes.
Samples are vortex mixed and extracted by protein precipitation with a 1 :3 aliquot of acetonitrile containing 0.1% formic acid and internal standard. Samples are then vortex mixed and centrifuged (2000 x g, 15 minutes, 4 °C) and an aliquot of the supernatant removed into a 96-deep well plate and diluted with an equal volume of water ready for analysis by LC/MS/MS.
LC/MS/MS analysis was conducted on a Waters Acquity UPLC and Xevo TQ MS (Massachusetts, US). Compound and internal standard were analyzed using specific MRM transitions. Peak area response ratios of parent compound to internal standard were determined using Waters TargetLynx v4.1 (Massachusetts, US).
Plasma protein binding was calculated using the following equations:
Plasma fu = PBS response ratio / Plasma response ratio
% Binding = (1 - Plasma fu) x 100
Brain tissue binding was calculated using the following equations:
Apparent fu = PBS response ratio / Brain response ratio Brain fu = (1/D) / [((1 / Apparent fu) - 1) + (1/D)]
% Binding = (1 - Brain fu) x 100 D = Brain homogenate dilution (i.e. '3' for a 2mL: lg dilution): (Kalvass JC. and Maurer TS. (2002) Influence of nonspecific brain and plasma binding on CNS exposure:
Implications for rational drug discovery. Biopharm. Drug Dispos. 23, 327). Table 4
Figure imgf000135_0001
Determination of rat and human in vitro microsomal stability
Pooled human liver microsomes (pooled male and female) and pooled rat liver microsomes (male Sprague-Dawley rats) are used. Supplies are stored frozen at -80°C prior to use.
Liver microsomes (final protein concentration 0.5 mg/ml), 0.1 M phosphate buffer pH7.4 (including 0.25% DMSO) and test compound (1 μΜ), are pre-incubated at 37°C prior to the addition of NADPH (ImM) to initiate the reaction. A control incubation is included for each compound tested where 0.1 M phosphate buffer pH 7.4 is added instead of NADPH. Two standard marker compounds are incubated with each experiment for each species.
Each compound is incubated for 0, 5, 15, 30 and 45 minutes. The control incubation (minus NADPH) is incubated for 45 minutes only The reactions are stopped by the addition of 2 volumes of methanol containing internal standard at the appropriate time points. The incubation plates are centrifuged at 2500 rpm for 20 minutes at 4 °C to precipitate the protein.
Following protein precipitation, the supernatants are combined into cassettes and analysed using LC-MS/MS.
The gradient of the line is determined from a plot of In peak area ratio
(compound peak area/internal standard peak area) against time. Subsequently, half-life (tl/2) and intrinsic clearance are calculated using the equations below:
k (Elimination rate constant) =- gradient
t½ (mins) = 0.693/k
V (μί) = incubation volume μΐ per mg microsomal protein.
Clint ^L/min/mg) = V*0.693/ 1½
The Clint values for the two standard marker compounds must be in the acceptable range to validate the experiment. Table 5
Figure imgf000136_0001
Determination of Rat Metabolic Stability
Compounds were formulated in 5:5:90% (v/v/v) DMSO: 1M HC1: MilliQ water at 1 mg/mL and dosed intravenous bolus into the tail vein at 1 mL/kg to n=3 male Sprague Dawley rats (1 mg/kg) which had been surgically prepared to cannulate the jugular vein (JV). Serial blood samples were collected from the JV cannula at intervals from 2 minutes to up 24 hours into tubes containing sodium heparin as anticoagulant and immediately stored at -20 °C or below.
Blood samples were then thawed and vortex mixed, and a calibration line prepared in control rat blood by spiking known amounts of each compound into blood to cover the range 2 - 4000 ng/mL. Samples, standards and blanks were then extracted by protein precipitation with acetonitrile containing internal standard, vortex mixed and centrifuged. The resulting supernatant was analysed by LC/MS/MS to quantify concentrations of compound in blood. Non-compartmental analysis of the concentration data was conducted in WinNonlin v5.3 to determine the intravenous pharmacokinetics of each compound.
Table 6
Figure imgf000136_0002

Claims

CLAIMS:
1. A compound of formula (I):
Figure imgf000137_0001
or a pharmaceutically acceptable salt thereof, wherein
R1 is a 5- to 10- membered carbocyclic group or a 5- to 10- membered heterocyclic group, either of which is optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, a carbamoyl group which is optionally substituted with one or two Ci_6 alkyl groups, a sulfonylamino group which is optionally substituted with one or two Ci_6 alkyl groups, an aminosulfonyl group which is optionally substituted with one or two Ci_6 alkyl groups, an amino group which is optionally substituted with one or two Ci_6 alkyl groups which are each optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C2-6 alkenyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a C2_6 alkynyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a Ci_6 alkoxy group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, a Ci_6 alkylthio group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, and a Ci_6 alkyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a;
R is a 5- to 6- membered heteroaryl group optionally substituted with at least one substituent independently selected from a halogen atom, a cyano group, a nitro group, a hydroxyl group, an amino group which is optionally substituted with one or two Ci_6 alkyl groups, a Ci_6 alkoxy group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a, and a Ci_6 alkyl group which is optionally substituted with 1 to 3 substituents selected from Substituent Group a;
R3 and R4 each independently represent a hydrogen atom, a C3-6 cycloalkyl group or a Ci_6 alkyl group optionally substituted with 1 to 3 substituents selected from Substituent Group a; wherein each substituent selected from Substituent Group a is independently a halogen atom, a cyano group, a hydroxyl group, a Ci_6 alkoxy group or an oxo group;
R5 is a hydrogen atom or a fluorine atom;
R6, R7, R8 and R9 are independently a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a trifluoromethyl group.
2. A compound as claimed in claim 1 , or a pharmaceutically acceptable salt thereof, wherein R is a group of formula (II),
Figure imgf000138_0001
11 12 13
wherein R , R and R are independently a hydrogen atom, a halogen atom, a Ci-6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 haloalkoxy group, a Ci_6 hydroxyalkyl group or a C 1-6 alkyl group optionally substituted with a Ci-6 alkoxy group.
3. A compound as claimed in claim 1 or claim 2, or a pharmaceutically acceptable salt thereof, wherein R1 is a group of formula (III),
Figure imgf000138_0002
wherein R a is a hydrogen atom or a fluorine atom; and R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a Ci_6 haloalkyl group, a Ci_6 alkoxy group, a Ci-6 alkyl group which is optionally substituted with a Ci_6 alkoxy group, or an amino group which is optionally substituted with one or two substituents independently selected from a Ci_6 alkyl group and a Ci_6 haloalkyl group.
4. A compound as claimed in claim 1 or claim 2, or a pharmaceutically acceptable salt thereof, wherein R1 is a group of formula (IV),
Figure imgf000138_0003
wherein R is a hydrogen atom, a fluorine atom, a chlorine atom, a cyano group, a C haloalkyl group or a Ci-6 alkyl group.
5. A compound as claimed in any one of claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein R3, R4, R5, R6, R7, R8 and R9 are each independently hydrogen atom.
6. A compound as claimed in claim 1 of formula (IBa), or a pharmaceutically acceptable salt thereof,
Figure imgf000139_0001
wherein
R is a hydrogen atom, a fluorine atom or a cyano group;
R11 is a methoxy group;
R 12 is a hydrogen atom or a fluorine atom; and
R 13 is a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a hydroxymethyl group.
7. A compound as claimed in claim 1 of formula (IEa), or a pharmaceutically acceptable salt thereof,
Figure imgf000139_0002
wherein
R is a hydrogen atom, a fluorine atom or a trifluoromethyl group;
R11 is a methoxy group;
R 12 is a hydrogen atom or a fluorine atom; and
R 13 is a hydrogen atom, a methyl group, a monofluoromethyl group, a difluoromethyl group or a hydroxymethyl group.
8. A compound as claimed in claim 1 which is selected from:-
(4aR,7aS)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(2-fluorophenyl)-
4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine;
(4aR,7aS)-7a-(2,5-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2- yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine; and
(4aR,7aR)-6-(5-fiuoro-4-methoxy-6-methylpyrimidin-2-yl)-7a-(pyridin-2-yl)-
4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][l,3]thiazin-2-amine,
or a pharmaceutically acceptable salt thereof.
9. A compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for use in therapy.
10. A compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for inhibiting beta-site amyloid-β precursor protein cleaving enzyme 1 (BACE1).
11. A compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for treating or preventing Alzheimer-type dementia (AD).
12. A compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for treating Down's syndrome.
13. Use of a compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment or prevention of Alzheimer-type dementia (AD).
14. Use of a compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the treatment of Down's syndrome.
15. A pharmaceutical composition comprising the compound as claimed in any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, as an active ingredient in association with a pharmaceutically acceptable carrier.
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